HEADER    TRANSCRIPTION REGULATOR                 19-MAY-08   2K3Y              
TITLE     SOLUTION STRUCTURE OF EAF3 CHROMO BARREL DOMAIN BOUND TO HISTONE H3   
TITLE    2 WITH A DIMETHYLLYSINE ANALOG H3K36ME2                                
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: CHROMATIN MODIFICATION-RELATED PROTEIN EAF3;               
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: UNP RESIDUES 1 TO 115;                                     
COMPND   5 SYNONYM: ESA1-ASSOCIATED FACTOR 3;                                   
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;                       
SOURCE   3 ORGANISM_COMMON: BAKER'S YEAST;                                      
SOURCE   4 ORGANISM_TAXID: 4932;                                                
SOURCE   5 GENE: EAF3, YPR023C, YP9367.03C;                                     
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_VECTOR: PTEV                                       
KEYWDS    EAF3, DIMETHYLATED HISTONE H3K36, EAF3-H3K36ME2 FUSION, CHROMO BARREL 
KEYWDS   2 DOMAIN, HISTONE DEACETYLASE, CHROMATIN REGULATOR, DNA DAMAGE, DNA    
KEYWDS   3 REPAIR, NUCLEUS, PHOSPHOPROTEIN, TRANSCRIPTION, TRANSCRIPTION        
KEYWDS   4 REGULATION, CHROMOSOMAL PROTEIN, DNA-BINDING, TRANSCRIPTION          
KEYWDS   5 REGULATOR                                                            
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    G.MER,C.XU                                                            
REVDAT   7   06-NOV-24 2K3Y    1       REMARK                                   
REVDAT   6   15-NOV-23 2K3Y    1       ATOM                                     
REVDAT   5   16-MAR-22 2K3Y    1       REMARK SEQADV LINK                       
REVDAT   4   09-JUN-09 2K3Y    1       REVDAT                                   
REVDAT   3   24-FEB-09 2K3Y    1       VERSN                                    
REVDAT   2   02-DEC-08 2K3Y    1       JRNL                                     
REVDAT   1   16-SEP-08 2K3Y    0                                                
JRNL        AUTH   C.XU,G.CUI,M.V.BOTUYAN,G.MER                                 
JRNL        TITL   STRUCTURAL BASIS FOR THE RECOGNITION OF METHYLATED HISTONE   
JRNL        TITL 2 H3K36 BY THE EAF3 SUBUNIT OF HISTONE DEACETYLASE COMPLEX     
JRNL        TITL 3 RPD3S.                                                       
JRNL        REF    STRUCTURE                     V.  16  1740 2008              
JRNL        REFN                   ISSN 0969-2126                               
JRNL        PMID   18818090                                                     
JRNL        DOI    10.1016/J.STR.2008.08.008                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : NMRPIPE, AMBER                                       
REMARK   3   AUTHORS     : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX    
REMARK   3                 (NMRPIPE), CASE, DARDEN, CHEATHAM, III, SIMMERLING,  
REMARK   3                 WANG, DUKE, LUO, ... AND KOLLM (AMBER)               
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2K3Y COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-08.                  
REMARK 100 THE DEPOSITION ID IS D_1000100645.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 300                                
REMARK 210  PH                             : 6.7                                
REMARK 210  IONIC STRENGTH                 : 50                                 
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 0.4-1.5 MM [U-100% 15N] ENTITY,    
REMARK 210                                   20 MM SODIUM PHOSPHATE, 50 MM      
REMARK 210                                   SODIUM CHLORIDE, 1 MM EDTA, 2 MM   
REMARK 210                                   DTT, 93% H2O/7% D2O; 0.4-1.5 MM    
REMARK 210                                   [U-100% 13C; U-100% 15N] ENTITY,   
REMARK 210                                   20 MM SODIUM PHOSPHATE, 50 MM      
REMARK 210                                   SODIUM CHLORIDE, 1 MM EDTA, 2 MM   
REMARK 210                                   DTT, 93% H2O/7% D2O                
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-15N HSQC; 3D 1H-15N TOCSY;   
REMARK 210                                   3D 1H-15N NOESY; 2D 1H-13C HSQC;   
REMARK 210                                   3D HNCACB; 3D CBCA(CO)NH; 3D       
REMARK 210                                   HBHA(CO)NH; 3D HCCH-TOCSY; 3D      
REMARK 210                                   HNCO; 3D HCACO; 3D CCH-COSY; 3D    
REMARK 210                                   CCH-TOCSY; 3D C(CO)NH; 3D H(CCO)   
REMARK 210                                   NH; 2D HBCGCDCEHE; 2D HBCGCDHD;    
REMARK 210                                   3D 1H-13C NOESY; 3D 1H-13C NOESY   
REMARK 210                                   AROMATIC                           
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ; 700 MHZ                   
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRVIEW, SANE, SPARKY, CYANA       
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 200                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                   
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                            
REMARK 465   MODELS 1-20                                                        
REMARK 465     RES C SSSEQI                                                     
REMARK 465     GLY A    -1                                                      
REMARK 465     HIS A     0                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   OD1  ASP A    32     HG   SER A    34              1.60            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500  1 ALA A   9   CB  -  CA  -  C   ANGL. DEV. =   9.1 DEGREES          
REMARK 500  5 TYR A  38   CB  -  CG  -  CD1 ANGL. DEV. =  -3.6 DEGREES          
REMARK 500  5 ARG A 132   NE  -  CZ  -  NH2 ANGL. DEV. =  -3.4 DEGREES          
REMARK 500  7 TYR A  38   CB  -  CG  -  CD2 ANGL. DEV. =  -3.9 DEGREES          
REMARK 500  9 TYR A  38   CB  -  CG  -  CD1 ANGL. DEV. =  -3.7 DEGREES          
REMARK 500 10 ARG A  13   NE  -  CZ  -  NH2 ANGL. DEV. =  -3.0 DEGREES          
REMARK 500 16 ALA A   9   CB  -  CA  -  C   ANGL. DEV. =   9.3 DEGREES          
REMARK 500 19 TYR A  38   CB  -  CG  -  CD2 ANGL. DEV. =  -3.7 DEGREES          
REMARK 500 20 ALA A   9   CB  -  CA  -  C   ANGL. DEV. =   9.4 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 LEU A  28      -30.05   -158.01                                   
REMARK 500  1 PRO A  42       46.20    -78.50                                   
REMARK 500  1 ASP A  44     -169.17   -164.65                                   
REMARK 500  1 GLU A  55       80.77      4.79                                   
REMARK 500  1 PRO A 122       10.42    -61.01                                   
REMARK 500  1 THR A 124      -30.97     73.17                                   
REMARK 500  1 LYS A 129       94.68     19.63                                   
REMARK 500  2 LEU A   4      -40.76     60.33                                   
REMARK 500  2 LEU A  10       -3.14    -59.73                                   
REMARK 500  2 LEU A  28      -25.21   -161.26                                   
REMARK 500  2 PRO A  42       44.84    -74.29                                   
REMARK 500  2 ASP A  44     -124.23   -160.89                                   
REMARK 500  2 LYS A  54     -163.53     50.80                                   
REMARK 500  2 SER A  66      118.47    -22.40                                   
REMARK 500  2 ALA A 115        3.63     55.64                                   
REMARK 500  2 SER A 120       77.13    -66.47                                   
REMARK 500  3 ASP A   3      -60.84   -152.37                                   
REMARK 500  3 PHE A   8       87.83    -59.26                                   
REMARK 500  3 LEU A  28      -24.43   -160.53                                   
REMARK 500  3 PRO A  42       41.73    -86.82                                   
REMARK 500  3 SER A  49       17.85     53.98                                   
REMARK 500  3 ALA A  52       75.54   -160.82                                   
REMARK 500  3 THR A  53      -80.14   -112.50                                   
REMARK 500  3 LYS A  54     -139.18   -148.14                                   
REMARK 500  3 GLU A  55      107.53    -58.69                                   
REMARK 500  3 ASP A  64      -29.88   -153.48                                   
REMARK 500  3 GLU A  65       35.81    -82.08                                   
REMARK 500  3 SER A  66      144.21    -32.73                                   
REMARK 500  3 LYS A 129       94.49     30.48                                   
REMARK 500  4 ASP A   3      -53.03   -150.03                                   
REMARK 500  4 PHE A   8       83.51    -60.06                                   
REMARK 500  4 LEU A  28      -28.37   -161.51                                   
REMARK 500  4 PRO A  42       46.15    -78.32                                   
REMARK 500  4 THR A  53      -82.09    -92.94                                   
REMARK 500  4 LYS A  54     -154.74   -151.50                                   
REMARK 500  4 ASP A  64        2.65   -160.32                                   
REMARK 500  4 SER A  66      142.06    -33.05                                   
REMARK 500  4 SER A 117       16.55     54.82                                   
REMARK 500  4 SER A 120       16.68    -68.43                                   
REMARK 500  4 ARG A 132      -38.35    126.75                                   
REMARK 500  5 LEU A   4       12.63     58.32                                   
REMARK 500  5 PHE A   8       82.60    -62.71                                   
REMARK 500  5 LEU A  28      -35.06   -154.96                                   
REMARK 500  5 LYS A  54     -153.41     49.66                                   
REMARK 500  5 ASP A  64      -31.69   -152.07                                   
REMARK 500  5 ALA A 115        0.62     54.80                                   
REMARK 500  5 THR A 118       49.75    -75.90                                   
REMARK 500  5 LYS A 129       97.56     28.03                                   
REMARK 500  6 ASP A   3      -54.63   -162.35                                   
REMARK 500  6 LEU A  10       -8.07    -58.77                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     193 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500  1 PHE A  77         0.08    SIDE CHAIN                              
REMARK 500 11 TYR A  23         0.09    SIDE CHAIN                              
REMARK 500 12 TYR A  23         0.07    SIDE CHAIN                              
REMARK 500 12 TYR A  94         0.08    SIDE CHAIN                              
REMARK 500 13 TYR A  23         0.13    SIDE CHAIN                              
REMARK 500 15 TYR A  23         0.18    SIDE CHAIN                              
REMARK 500 16 TYR A  23         0.12    SIDE CHAIN                              
REMARK 500 18 TYR A  94         0.10    SIDE CHAIN                              
REMARK 500 19 TYR A  23         0.09    SIDE CHAIN                              
REMARK 500 20 TYR A  94         0.08    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 600                                                                      
REMARK 600 HETEROGEN                                                            
REMARK 600                                                                      
REMARK 600 HIS RESIDUES HAVE HYDROGENS ONLY ON THE EPSILON NITROGEN             
DBREF  2K3Y A    1   115  UNP    Q12432   EAF3_YEAST       1    115             
DBREF  2K3Y A  116   132  PDB    2K3Y     2K3Y           116    132             
SEQADV 2K3Y GLY A   -1  UNP  Q12432              EXPRESSION TAG                 
SEQADV 2K3Y HIS A    0  UNP  Q12432              EXPRESSION TAG                 
SEQADV 2K3Y VAL A   14  UNP  Q12432    CYS    14 CONFLICT                       
SEQADV 2K3Y SER A   76  UNP  Q12432    CYS    76 CONFLICT                       
SEQRES   1 A  136  GLY HIS MET VAL ASP LEU GLU GLN GLU PHE ALA LEU GLY          
SEQRES   2 A  136  GLY ARG VAL LEU ALA PHE HIS GLY PRO LEU MET TYR GLU          
SEQRES   3 A  136  ALA LYS ILE LEU LYS ILE TRP ASP PRO SER SER LYS MET          
SEQRES   4 A  136  TYR THR SER ILE PRO ASN ASP LYS PRO GLY GLY SER SER          
SEQRES   5 A  136  GLN ALA THR LYS GLU ILE LYS PRO GLN LYS LEU GLY GLU          
SEQRES   6 A  136  ASP GLU SER ILE PRO GLU GLU ILE ILE ASN GLY LYS SER          
SEQRES   7 A  136  PHE PHE ILE HIS TYR GLN GLY TRP LYS SER SER TRP ASP          
SEQRES   8 A  136  GLU TRP VAL GLY TYR ASP ARG ILE ARG ALA TYR ASN GLU          
SEQRES   9 A  136  GLU ASN ILE ALA MET LYS LYS ARG LEU ALA ASN GLU ALA          
SEQRES  10 A  136  GLY SER THR GLY SER ALA PRO ALA THR GLY GLY VAL M2L          
SEQRES  11 A  136  LYS PRO HIS ARG TYR ARG                                      
MODRES 2K3Y M2L A  128  LYS                                                     
HET    M2L  A 128      26                                                       
HETNAM     M2L (2R)-2-AMINO-3-(2-DIMETHYLAMINOETHYLSULFANYL)PROPANOIC           
HETNAM   2 M2L  ACID                                                            
FORMUL   1  M2L    C7 H16 N2 O2 S                                               
HELIX    1   1 VAL A    2  GLU A    7  5                                   6    
HELIX    2   2 PRO A   68  ASN A   73  1                                   6    
HELIX    3   3 LYS A   85  ASP A   89  5                                   5    
HELIX    4   4 ASN A  101  ALA A  115  1                                  15    
SHEET    1   A 4 TYR A  38  SER A  40  0                                        
SHEET    2   A 4 MET A  22  TRP A  31 -1  N  ILE A  30   O  THR A  39           
SHEET    3   A 4 SER A  76  ILE A  79 -1  O  PHE A  78   N  LYS A  29           
SHEET    4   A 4 GLU A  90  GLY A  93 -1  O  GLU A  90   N  ILE A  79           
SHEET    1   B 4 TYR A  38  SER A  40  0                                        
SHEET    2   B 4 MET A  22  TRP A  31 -1  N  ILE A  30   O  THR A  39           
SHEET    3   B 4 ARG A  13  PHE A  17 -1  N  VAL A  14   O  ALA A  25           
SHEET    4   B 4 ILE A  97  ALA A  99 -1  O  ARG A  98   N  LEU A  15           
LINK         C   VAL A 127                 N   M2L A 128     1555   1555  1.33  
LINK         C   M2L A 128                 N   LYS A 129     1555   1555  1.33  
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1