HEADER STRUCTURAL PROTEIN 08-JUN-08 2K4H TITLE SOLUTION STRUCTURE OF THE HIV-2 MYRISTOYLATED MATRIX PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-2 MYRISTOYLATED MATRIX PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2 TO 135; COMPND 5 SYNONYM: MATRIX PROTEIN P17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 2; SOURCE 3 ORGANISM_COMMON: HIV-2; SOURCE 4 ORGANISM_TAXID: 11720; SOURCE 5 STRAIN: PROD10; SOURCE 6 GENE: GAG-POL; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET 11 AND 19 KEYWDS AIDS, CAPSID PROTEIN, MYRISTATE, MATRIX, GAG, HIV, VIRION, STRUCTURAL KEYWDS 2 PROTEIN, PLASMA MEMBRANE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.S.SAAD,S.D.ABLAN,R.H.GHANAM,A.KIM,K.ANDREWS,K.NAGASHIMA,E.O.FREED, AUTHOR 2 M.F.SUMMERS REVDAT 4 16-MAR-22 2K4H 1 REMARK LINK REVDAT 3 24-FEB-09 2K4H 1 VERSN REVDAT 2 16-SEP-08 2K4H 1 JRNL REVDAT 1 12-AUG-08 2K4H 0 JRNL AUTH J.S.SAAD,S.D.ABLAN,R.H.GHANAM,A.KIM,K.ANDREWS,K.NAGASHIMA, JRNL AUTH 2 F.SOHEILIAN,E.O.FREED,M.F.SUMMERS JRNL TITL STRUCTURE OF THE MYRISTYLATED HUMAN IMMUNODEFICIENCY VIRUS JRNL TITL 2 TYPE 2 MATRIX PROTEIN AND THE ROLE OF JRNL TITL 3 PHOSPHATIDYLINOSITOL-(4,5)-BISPHOSPHATE IN MEMBRANE JRNL TITL 4 TARGETING. JRNL REF J.MOL.BIOL. V. 382 434 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18657545 JRNL DOI 10.1016/J.JMB.2008.07.027 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K4H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000100664. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-15N] HIV-2 REMARK 210 MYRISTOYLATED MATRIX PROTEIN, 20 REMARK 210 MM POTASSIUM PHOSPHATE, 10 MM REMARK 210 DTT, 50 MM GLUTAMATE, 50 MM REMARK 210 ASPARTATE, 100 MM SODIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O; 0.8 REMARK 210 MM HIV-2 MYRISTOYLATED MATRIX REMARK 210 PROTEIN, 100% D2O; 0.8 MM [U-13C; REMARK 210 U-15N] HIV-2 MYRISTOYLATED REMARK 210 MATRIX PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 2D 1H-1H NOESY; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D 1H-15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 4 176.99 58.96 REMARK 500 1 PRO A 69 0.04 -69.77 REMARK 500 1 SER A 72 -169.88 -120.07 REMARK 500 1 LYS A 95 -51.64 -130.70 REMARK 500 1 GLU A 116 30.53 -99.43 REMARK 500 1 LYS A 117 -40.03 -168.44 REMARK 500 1 MET A 118 70.51 54.47 REMARK 500 1 PRO A 127 88.47 -69.74 REMARK 500 2 ARG A 4 -53.28 -147.79 REMARK 500 2 ASN A 5 -53.46 -161.19 REMARK 500 2 THR A 114 39.46 -150.50 REMARK 500 2 ALA A 115 -43.37 -146.99 REMARK 500 2 GLU A 116 30.31 -99.44 REMARK 500 2 PRO A 119 98.92 -69.84 REMARK 500 2 SER A 120 97.11 -176.00 REMARK 500 2 ALA A 126 80.63 -154.13 REMARK 500 3 ALA A 3 -49.45 -173.62 REMARK 500 3 ARG A 4 98.86 -173.22 REMARK 500 3 ASN A 5 -75.39 69.46 REMARK 500 3 ARG A 9 177.67 -56.89 REMARK 500 3 THR A 70 60.67 -157.35 REMARK 500 3 ALA A 115 45.97 -174.96 REMARK 500 3 GLU A 116 54.10 -142.69 REMARK 500 3 PRO A 119 -175.78 -69.67 REMARK 500 3 GLU A 130 111.69 -171.31 REMARK 500 4 ARG A 4 -175.56 61.47 REMARK 500 4 THR A 70 51.39 -141.49 REMARK 500 4 LYS A 95 -50.26 -124.16 REMARK 500 4 MET A 118 80.63 60.50 REMARK 500 4 PRO A 119 -178.83 -69.75 REMARK 500 4 PRO A 124 -178.78 -69.71 REMARK 500 4 SER A 129 100.95 -169.94 REMARK 500 5 ALA A 3 52.99 -162.20 REMARK 500 5 ARG A 4 -175.34 55.97 REMARK 500 5 ASN A 5 -171.73 54.31 REMARK 500 5 LEU A 8 -179.91 -65.03 REMARK 500 5 SER A 72 -169.56 -120.29 REMARK 500 5 MET A 118 72.84 53.10 REMARK 500 5 PRO A 119 94.71 -69.75 REMARK 500 5 SER A 120 -174.61 -177.10 REMARK 500 6 ARG A 4 -42.85 -170.65 REMARK 500 6 PRO A 69 0.72 -69.79 REMARK 500 6 THR A 70 56.76 -156.33 REMARK 500 6 ALA A 115 49.93 -169.89 REMARK 500 6 MET A 118 80.32 59.76 REMARK 500 6 PRO A 119 -171.45 -69.77 REMARK 500 6 LYS A 131 58.15 -108.92 REMARK 500 7 LEU A 8 -179.06 -60.93 REMARK 500 7 THR A 70 56.93 -142.54 REMARK 500 7 SER A 72 -169.35 -109.60 REMARK 500 REMARK 500 THIS ENTRY HAS 166 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYR A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2K4E RELATED DB: PDB REMARK 900 RELATED ID: 2K4I RELATED DB: PDB DBREF 2K4H A 2 135 UNP P04584 POL_HV2RO 2 135 SEQRES 1 A 134 GLY ALA ARG ASN SER VAL LEU ARG GLY LYS LYS ALA ASP SEQRES 2 A 134 GLU LEU GLU ARG ILE ARG LEU ARG PRO GLY GLY LYS LYS SEQRES 3 A 134 LYS TYR ARG LEU LYS HIS ILE VAL TRP ALA ALA ASN LYS SEQRES 4 A 134 LEU ASP ARG PHE GLY LEU ALA GLU SER LEU LEU GLU SER SEQRES 5 A 134 LYS GLU GLY CYS GLN LYS ILE LEU THR VAL LEU ASP PRO SEQRES 6 A 134 MET VAL PRO THR GLY SER GLU ASN LEU LYS SER LEU PHE SEQRES 7 A 134 ASN THR VAL CYS VAL ILE TRP CYS ILE HIS ALA GLU GLU SEQRES 8 A 134 LYS VAL LYS ASP THR GLU GLY ALA LYS GLN ILE VAL ARG SEQRES 9 A 134 ARG HIS LEU VAL ALA GLU THR GLY THR ALA GLU LYS MET SEQRES 10 A 134 PRO SER THR SER ARG PRO THR ALA PRO SER SER GLU LYS SEQRES 11 A 134 GLY GLY ASN TYR HET MYR A 1 42 HETNAM MYR MYRISTIC ACID FORMUL 2 MYR C14 H28 O2 HELIX 1 1 ARG A 9 GLU A 17 1 9 HELIX 2 2 ARG A 30 GLY A 45 1 16 HELIX 3 3 GLU A 48 GLU A 52 5 5 HELIX 4 4 SER A 53 ASP A 65 1 13 HELIX 5 5 MET A 67 GLY A 71 5 5 HELIX 6 6 SER A 72 GLU A 91 1 20 HELIX 7 7 ASP A 96 THR A 112 1 17 LINK C1 MYR A 1 N GLY A 2 1555 1555 1.33 SITE 1 AC1 8 GLY A 2 ALA A 3 LEU A 8 LEU A 16 SITE 2 AC1 8 ILE A 34 ALA A 38 GLU A 48 LEU A 51 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1