data_2K4I # _entry.id 2K4I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2K4I RCSB RCSB100665 WWPDB D_1000100665 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2K4E unspecified . PDB 2K4H unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2K4I _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-06-08 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Saad, J.S.' 1 'Ablan, S.D.' 2 'Ghanam, R.H.' 3 'Kim, A.' 4 'Andrews, K.' 5 'Nagashima, K.' 6 'Freed, E.O.' 7 'Summers, M.F.' 8 # _citation.id primary _citation.title ;Structure of the myristylated human immunodeficiency virus type 2 matrix protein and the role of phosphatidylinositol-(4,5)-bisphosphate in membrane targeting. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 382 _citation.page_first 434 _citation.page_last 447 _citation.year 2008 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18657545 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2008.07.027 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Saad, J.S.' 1 primary 'Ablan, S.D.' 2 primary 'Ghanam, R.H.' 3 primary 'Kim, A.' 4 primary 'Andrews, K.' 5 primary 'Nagashima, K.' 6 primary 'Soheilian, F.' 7 primary 'Freed, E.O.' 8 primary 'Summers, M.F.' 9 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HIV-2 myristoylated matrix protein' 14899.256 1 ? ? 'UNP residues 2 to 135' ? 2 non-polymer syn 'MYRISTIC ACID' 228.371 1 ? ? ? ? 3 non-polymer syn ;(2R)-3-{[(R)-HYDROXY{[(1R,2R,3S,4R,5R,6S)-2,3,6-TRIHYDROXY-4,5-BIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}PROPANE-1,2-DIYL DIBUTANOATE ; 634.354 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Matrix protein p17' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GARNSVLRGKKADELERIRLRPGGKKKYRLKHIVWAANKLDRFGLAESLLESKEGCQKILTVLDPMVPTGSENLKSLFNT VCVIWCIHAEEKVKDTEGAKQIVRRHLVAETGTAEKMPSTSRPTAPSSEKGGNY ; _entity_poly.pdbx_seq_one_letter_code_can ;GARNSVLRGKKADELERIRLRPGGKKKYRLKHIVWAANKLDRFGLAESLLESKEGCQKILTVLDPMVPTGSENLKSLFNT VCVIWCIHAEEKVKDTEGAKQIVRRHLVAETGTAEKMPSTSRPTAPSSEKGGNY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 ARG n 1 4 ASN n 1 5 SER n 1 6 VAL n 1 7 LEU n 1 8 ARG n 1 9 GLY n 1 10 LYS n 1 11 LYS n 1 12 ALA n 1 13 ASP n 1 14 GLU n 1 15 LEU n 1 16 GLU n 1 17 ARG n 1 18 ILE n 1 19 ARG n 1 20 LEU n 1 21 ARG n 1 22 PRO n 1 23 GLY n 1 24 GLY n 1 25 LYS n 1 26 LYS n 1 27 LYS n 1 28 TYR n 1 29 ARG n 1 30 LEU n 1 31 LYS n 1 32 HIS n 1 33 ILE n 1 34 VAL n 1 35 TRP n 1 36 ALA n 1 37 ALA n 1 38 ASN n 1 39 LYS n 1 40 LEU n 1 41 ASP n 1 42 ARG n 1 43 PHE n 1 44 GLY n 1 45 LEU n 1 46 ALA n 1 47 GLU n 1 48 SER n 1 49 LEU n 1 50 LEU n 1 51 GLU n 1 52 SER n 1 53 LYS n 1 54 GLU n 1 55 GLY n 1 56 CYS n 1 57 GLN n 1 58 LYS n 1 59 ILE n 1 60 LEU n 1 61 THR n 1 62 VAL n 1 63 LEU n 1 64 ASP n 1 65 PRO n 1 66 MET n 1 67 VAL n 1 68 PRO n 1 69 THR n 1 70 GLY n 1 71 SER n 1 72 GLU n 1 73 ASN n 1 74 LEU n 1 75 LYS n 1 76 SER n 1 77 LEU n 1 78 PHE n 1 79 ASN n 1 80 THR n 1 81 VAL n 1 82 CYS n 1 83 VAL n 1 84 ILE n 1 85 TRP n 1 86 CYS n 1 87 ILE n 1 88 HIS n 1 89 ALA n 1 90 GLU n 1 91 GLU n 1 92 LYS n 1 93 VAL n 1 94 LYS n 1 95 ASP n 1 96 THR n 1 97 GLU n 1 98 GLY n 1 99 ALA n 1 100 LYS n 1 101 GLN n 1 102 ILE n 1 103 VAL n 1 104 ARG n 1 105 ARG n 1 106 HIS n 1 107 LEU n 1 108 VAL n 1 109 ALA n 1 110 GLU n 1 111 THR n 1 112 GLY n 1 113 THR n 1 114 ALA n 1 115 GLU n 1 116 LYS n 1 117 MET n 1 118 PRO n 1 119 SER n 1 120 THR n 1 121 SER n 1 122 ARG n 1 123 PRO n 1 124 THR n 1 125 ALA n 1 126 PRO n 1 127 SER n 1 128 SER n 1 129 GLU n 1 130 LYS n 1 131 GLY n 1 132 GLY n 1 133 ASN n 1 134 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HIV-2 _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene gag-pol _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain pROD10 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus type 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11720 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector 'pET 11 and 19' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_HV2RO _struct_ref.pdbx_db_accession P04584 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GARNSVLRGKKADELERIRLRPGGKKKYRLKHIVWAANKLDRFGLAESLLESKEGCQKILTVLDPMVPTGSENLKSLFNT VCVIWCIHAEEKVKDTEGAKQIVRRHLVAETGTAEKMPSTSRPTAPSSEKGGNY ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2K4I _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 134 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P04584 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 135 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 135 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MYR non-polymer . 'MYRISTIC ACID' ? 'C14 H28 O2' 228.371 PBU non-polymer . ;(2R)-3-{[(R)-HYDROXY{[(1R,2R,3S,4R,5R,6S)-2,3,6-TRIHYDROXY-4,5-BIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}PROPANE-1,2-DIYL DIBUTANOATE ; 'di-butanoyl L-alpha-phosphatidyl-D-myo-inositol 4,5-bisphosphate; di-C4-PIP2' 'C17 H33 O19 P3' 634.354 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '3D 1H-15N NOESY' 1 3 2 '2D 1H-1H NOESY' 1 4 3 '3D HNCA' 1 5 3 '3D HN(CO)CA' 1 6 1 '3D 1H-15N TOCSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.1 _pdbx_nmr_exptl_sample_conditions.pH 6.3 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 308 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;0.8 mM [U-15N] HIV-2 myristoylated matrix protein, 20 mM potassium phosphate, 10 mM DTT, 50 mM Glutamate, 50 mM Aspartate, 100 mM sodium chloride, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' '0.8 mM HIV-2 myristoylated matrix protein, 100% D2O' 2 '100% D2O' '0.8 mM [U-13C; U-15N] HIV-2 myristoylated matrix protein, 90% H2O/10% D2O' 3 '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker DRX 1 'Bruker DRX' 600 Bruker DMX 2 'Bruker DMX' # _pdbx_nmr_refine.entry_id 2K4I _pdbx_nmr_refine.method 'distance geometry' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2K4I _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2K4I _pdbx_nmr_representative.selection_criteria 'fewest violations' # _pdbx_nmr_software.authors 'Guntert, Mumenthaler and Wuthrich' _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name CYANA _pdbx_nmr_software.version ? _pdbx_nmr_software.ordinal 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2K4I _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2K4I _struct.title 'Solution structure of HIV-2 myrMA bound to di-C4-PI(4,5)P2' _struct.pdbx_descriptor 'HIV-2 myristoylated matrix protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2K4I _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text 'AIDS, CAPSID PROTEIN, MYRISTATE, MATRIX, GAG, HIV, VIRION, STRUCTURAL PROTEIN, PLASMA MEMBRANE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 8 ? ILE A 18 ? ARG A 9 ILE A 19 1 ? 11 HELX_P HELX_P2 2 ARG A 29 ? GLY A 44 ? ARG A 30 GLY A 45 1 ? 16 HELX_P HELX_P3 3 GLU A 47 ? GLU A 51 ? GLU A 48 GLU A 52 5 ? 5 HELX_P HELX_P4 4 SER A 52 ? ASP A 64 ? SER A 53 ASP A 65 1 ? 13 HELX_P HELX_P5 5 SER A 71 ? ALA A 89 ? SER A 72 ALA A 90 1 ? 19 HELX_P HELX_P6 6 ASP A 95 ? ALA A 109 ? ASP A 96 ALA A 110 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_label_atom_id N _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id MYR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C1 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 2 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MYR _struct_conn.ptnr2_auth_seq_id 1 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.330 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MYR A 1' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE PBU A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLY A 1 ? GLY A 2 . ? 1_555 ? 2 AC1 6 LEU A 7 ? LEU A 8 . ? 1_555 ? 3 AC1 6 LEU A 15 ? LEU A 16 . ? 1_555 ? 4 AC1 6 ALA A 37 ? ALA A 38 . ? 1_555 ? 5 AC1 6 GLU A 47 ? GLU A 48 . ? 1_555 ? 6 AC1 6 LEU A 50 ? LEU A 51 . ? 1_555 ? 7 AC2 8 LEU A 20 ? LEU A 21 . ? 1_555 ? 8 AC2 8 ARG A 21 ? ARG A 22 . ? 1_555 ? 9 AC2 8 LYS A 26 ? LYS A 27 . ? 1_555 ? 10 AC2 8 TYR A 28 ? TYR A 29 . ? 1_555 ? 11 AC2 8 HIS A 32 ? HIS A 33 . ? 1_555 ? 12 AC2 8 TRP A 35 ? TRP A 36 . ? 1_555 ? 13 AC2 8 GLU A 72 ? GLU A 73 . ? 1_555 ? 14 AC2 8 ASN A 79 ? ASN A 80 . ? 1_555 ? # _atom_sites.entry_id 2K4I _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 2 2 GLY GLY A . n A 1 2 ALA 2 3 3 ALA ALA A . n A 1 3 ARG 3 4 4 ARG ARG A . n A 1 4 ASN 4 5 5 ASN ASN A . n A 1 5 SER 5 6 6 SER SER A . n A 1 6 VAL 6 7 7 VAL VAL A . n A 1 7 LEU 7 8 8 LEU LEU A . n A 1 8 ARG 8 9 9 ARG ARG A . n A 1 9 GLY 9 10 10 GLY GLY A . n A 1 10 LYS 10 11 11 LYS LYS A . n A 1 11 LYS 11 12 12 LYS LYS A . n A 1 12 ALA 12 13 13 ALA ALA A . n A 1 13 ASP 13 14 14 ASP ASP A . n A 1 14 GLU 14 15 15 GLU GLU A . n A 1 15 LEU 15 16 16 LEU LEU A . n A 1 16 GLU 16 17 17 GLU GLU A . n A 1 17 ARG 17 18 18 ARG ARG A . n A 1 18 ILE 18 19 19 ILE ILE A . n A 1 19 ARG 19 20 20 ARG ARG A . n A 1 20 LEU 20 21 21 LEU LEU A . n A 1 21 ARG 21 22 22 ARG ARG A . n A 1 22 PRO 22 23 23 PRO PRO A . n A 1 23 GLY 23 24 24 GLY GLY A . n A 1 24 GLY 24 25 25 GLY GLY A . n A 1 25 LYS 25 26 26 LYS LYS A . n A 1 26 LYS 26 27 27 LYS LYS A . n A 1 27 LYS 27 28 28 LYS LYS A . n A 1 28 TYR 28 29 29 TYR TYR A . n A 1 29 ARG 29 30 30 ARG ARG A . n A 1 30 LEU 30 31 31 LEU LEU A . n A 1 31 LYS 31 32 32 LYS LYS A . n A 1 32 HIS 32 33 33 HIS HIS A . n A 1 33 ILE 33 34 34 ILE ILE A . n A 1 34 VAL 34 35 35 VAL VAL A . n A 1 35 TRP 35 36 36 TRP TRP A . n A 1 36 ALA 36 37 37 ALA ALA A . n A 1 37 ALA 37 38 38 ALA ALA A . n A 1 38 ASN 38 39 39 ASN ASN A . n A 1 39 LYS 39 40 40 LYS LYS A . n A 1 40 LEU 40 41 41 LEU LEU A . n A 1 41 ASP 41 42 42 ASP ASP A . n A 1 42 ARG 42 43 43 ARG ARG A . n A 1 43 PHE 43 44 44 PHE PHE A . n A 1 44 GLY 44 45 45 GLY GLY A . n A 1 45 LEU 45 46 46 LEU LEU A . n A 1 46 ALA 46 47 47 ALA ALA A . n A 1 47 GLU 47 48 48 GLU GLU A . n A 1 48 SER 48 49 49 SER SER A . n A 1 49 LEU 49 50 50 LEU LEU A . n A 1 50 LEU 50 51 51 LEU LEU A . n A 1 51 GLU 51 52 52 GLU GLU A . n A 1 52 SER 52 53 53 SER SER A . n A 1 53 LYS 53 54 54 LYS LYS A . n A 1 54 GLU 54 55 55 GLU GLU A . n A 1 55 GLY 55 56 56 GLY GLY A . n A 1 56 CYS 56 57 57 CYS CYS A . n A 1 57 GLN 57 58 58 GLN GLN A . n A 1 58 LYS 58 59 59 LYS LYS A . n A 1 59 ILE 59 60 60 ILE ILE A . n A 1 60 LEU 60 61 61 LEU LEU A . n A 1 61 THR 61 62 62 THR THR A . n A 1 62 VAL 62 63 63 VAL VAL A . n A 1 63 LEU 63 64 64 LEU LEU A . n A 1 64 ASP 64 65 65 ASP ASP A . n A 1 65 PRO 65 66 66 PRO PRO A . n A 1 66 MET 66 67 67 MET MET A . n A 1 67 VAL 67 68 68 VAL VAL A . n A 1 68 PRO 68 69 69 PRO PRO A . n A 1 69 THR 69 70 70 THR THR A . n A 1 70 GLY 70 71 71 GLY GLY A . n A 1 71 SER 71 72 72 SER SER A . n A 1 72 GLU 72 73 73 GLU GLU A . n A 1 73 ASN 73 74 74 ASN ASN A . n A 1 74 LEU 74 75 75 LEU LEU A . n A 1 75 LYS 75 76 76 LYS LYS A . n A 1 76 SER 76 77 77 SER SER A . n A 1 77 LEU 77 78 78 LEU LEU A . n A 1 78 PHE 78 79 79 PHE PHE A . n A 1 79 ASN 79 80 80 ASN ASN A . n A 1 80 THR 80 81 81 THR THR A . n A 1 81 VAL 81 82 82 VAL VAL A . n A 1 82 CYS 82 83 83 CYS CYS A . n A 1 83 VAL 83 84 84 VAL VAL A . n A 1 84 ILE 84 85 85 ILE ILE A . n A 1 85 TRP 85 86 86 TRP TRP A . n A 1 86 CYS 86 87 87 CYS CYS A . n A 1 87 ILE 87 88 88 ILE ILE A . n A 1 88 HIS 88 89 89 HIS HIS A . n A 1 89 ALA 89 90 90 ALA ALA A . n A 1 90 GLU 90 91 91 GLU GLU A . n A 1 91 GLU 91 92 92 GLU GLU A . n A 1 92 LYS 92 93 93 LYS LYS A . n A 1 93 VAL 93 94 94 VAL VAL A . n A 1 94 LYS 94 95 95 LYS LYS A . n A 1 95 ASP 95 96 96 ASP ASP A . n A 1 96 THR 96 97 97 THR THR A . n A 1 97 GLU 97 98 98 GLU GLU A . n A 1 98 GLY 98 99 99 GLY GLY A . n A 1 99 ALA 99 100 100 ALA ALA A . n A 1 100 LYS 100 101 101 LYS LYS A . n A 1 101 GLN 101 102 102 GLN GLN A . n A 1 102 ILE 102 103 103 ILE ILE A . n A 1 103 VAL 103 104 104 VAL VAL A . n A 1 104 ARG 104 105 105 ARG ARG A . n A 1 105 ARG 105 106 106 ARG ARG A . n A 1 106 HIS 106 107 107 HIS HIS A . n A 1 107 LEU 107 108 108 LEU LEU A . n A 1 108 VAL 108 109 109 VAL VAL A . n A 1 109 ALA 109 110 110 ALA ALA A . n A 1 110 GLU 110 111 111 GLU GLU A . n A 1 111 THR 111 112 112 THR THR A . n A 1 112 GLY 112 113 113 GLY GLY A . n A 1 113 THR 113 114 114 THR THR A . n A 1 114 ALA 114 115 115 ALA ALA A . n A 1 115 GLU 115 116 116 GLU GLU A . n A 1 116 LYS 116 117 117 LYS LYS A . n A 1 117 MET 117 118 118 MET MET A . n A 1 118 PRO 118 119 119 PRO PRO A . n A 1 119 SER 119 120 120 SER SER A . n A 1 120 THR 120 121 121 THR THR A . n A 1 121 SER 121 122 122 SER SER A . n A 1 122 ARG 122 123 123 ARG ARG A . n A 1 123 PRO 123 124 124 PRO PRO A . n A 1 124 THR 124 125 125 THR THR A . n A 1 125 ALA 125 126 126 ALA ALA A . n A 1 126 PRO 126 127 127 PRO PRO A . n A 1 127 SER 127 128 128 SER SER A . n A 1 128 SER 128 129 129 SER SER A . n A 1 129 GLU 129 130 130 GLU GLU A . n A 1 130 LYS 130 131 131 LYS LYS A . n A 1 131 GLY 131 132 132 GLY GLY A . n A 1 132 GLY 132 133 133 GLY GLY A . n A 1 133 ASN 133 134 134 ASN ASN A . n A 1 134 TYR 134 135 135 TYR TYR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYR 1 1 1 MYR MYR A . C 3 PBU 1 300 300 PBU PBU A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-01-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'HIV-2 myristoylated matrix protein' 0.8 mM '[U-15N]' 1 'potassium phosphate' 20 mM ? 1 DTT 10 mM ? 1 Glutamate 50 mM ? 1 Aspartate 50 mM ? 1 'sodium chloride' 100 mM ? 1 'HIV-2 myristoylated matrix protein' 0.8 mM ? 2 'HIV-2 myristoylated matrix protein' 0.8 mM '[U-13C; U-15N]' 3 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 3 ? ? -173.19 -44.72 2 1 ARG A 4 ? ? -57.02 102.98 3 1 SER A 6 ? ? 56.23 -174.87 4 1 THR A 70 ? ? -149.83 51.53 5 1 ALA A 115 ? ? -126.45 -61.21 6 1 GLU A 116 ? ? -171.18 43.74 7 1 SER A 128 ? ? -57.97 -176.72 8 2 ALA A 3 ? ? -178.12 -35.11 9 2 ASN A 5 ? ? 60.19 172.78 10 2 LEU A 8 ? ? -59.02 171.47 11 2 THR A 114 ? ? -153.31 32.21 12 2 MET A 118 ? ? 55.26 79.34 13 2 ALA A 126 ? ? -164.63 76.76 14 3 ALA A 3 ? ? -63.78 -170.63 15 3 ARG A 4 ? ? -119.67 -73.49 16 3 SER A 6 ? ? -177.42 73.29 17 3 THR A 70 ? ? -154.56 57.44 18 3 ALA A 115 ? ? -178.17 37.06 19 3 GLU A 116 ? ? -140.28 -47.95 20 3 LYS A 117 ? ? -165.50 59.74 21 3 SER A 122 ? ? -164.85 37.69 22 3 LYS A 131 ? ? 59.85 87.78 23 4 SER A 6 ? ? 63.16 -179.38 24 4 THR A 70 ? ? -158.33 62.28 25 4 THR A 114 ? ? -170.84 33.50 26 4 ALA A 115 ? ? -173.47 56.17 27 4 LYS A 117 ? ? -155.82 61.37 28 4 SER A 128 ? ? -174.28 -179.20 29 4 SER A 129 ? ? 60.22 176.12 30 5 ARG A 4 ? ? 63.03 103.70 31 5 ASN A 5 ? ? -92.61 47.92 32 5 THR A 114 ? ? -165.16 29.93 33 5 GLU A 116 ? ? -130.41 -41.49 34 5 LYS A 117 ? ? -144.40 50.46 35 5 PRO A 119 ? ? -69.83 -175.87 36 5 SER A 128 ? ? -55.67 104.09 37 5 LYS A 131 ? ? 55.94 78.97 38 6 ASN A 5 ? ? -103.31 -65.76 39 6 ARG A 9 ? ? -58.28 178.96 40 6 SER A 72 ? ? -118.17 -169.94 41 6 ALA A 115 ? ? -157.53 59.90 42 6 MET A 118 ? ? 61.65 78.53 43 6 SER A 120 ? ? 58.82 70.10 44 6 THR A 121 ? ? -152.17 -42.54 45 6 PRO A 127 ? ? -69.83 -178.21 46 6 GLU A 130 ? ? -156.82 86.71 47 6 ASN A 134 ? ? -106.54 72.04 48 7 LYS A 26 ? ? -141.83 53.19 49 7 GLU A 116 ? ? -141.91 -61.31 50 7 MET A 118 ? ? 64.81 152.57 51 8 ARG A 4 ? ? -176.13 -57.76 52 8 ASN A 5 ? ? -175.28 108.57 53 8 SER A 6 ? ? 60.45 -171.13 54 8 ARG A 9 ? ? -67.32 -177.57 55 8 LEU A 46 ? ? -38.57 138.14 56 8 ALA A 115 ? ? -162.56 41.10 57 8 GLU A 116 ? ? -144.82 -53.87 58 8 PRO A 124 ? ? -69.79 -175.92 59 9 ALA A 3 ? ? 60.50 179.10 60 9 ASN A 5 ? ? -173.72 92.94 61 9 SER A 6 ? ? 58.28 -169.98 62 9 ARG A 9 ? ? -66.23 -177.32 63 9 LEU A 50 ? ? -99.48 31.56 64 9 PRO A 69 ? ? -69.74 2.45 65 9 THR A 70 ? ? -155.77 50.47 66 9 THR A 112 ? ? -99.97 33.45 67 9 LYS A 117 ? ? -169.11 41.25 68 9 SER A 120 ? ? 56.99 -176.36 69 9 PRO A 124 ? ? -69.73 93.38 70 9 THR A 125 ? ? -145.57 39.79 71 9 ALA A 126 ? ? -175.43 77.34 72 9 GLU A 130 ? ? 55.03 91.25 73 10 ARG A 4 ? ? -152.18 65.27 74 10 ASN A 5 ? ? -154.64 28.85 75 10 SER A 6 ? ? 62.33 172.53 76 10 ARG A 9 ? ? -56.29 173.43 77 10 LYS A 26 ? ? 173.12 -30.20 78 10 THR A 70 ? ? -89.11 37.01 79 10 ALA A 115 ? ? -163.26 42.00 80 10 MET A 118 ? ? 58.56 76.16 81 10 PRO A 119 ? ? -69.83 90.98 82 10 PRO A 124 ? ? -69.80 -179.60 83 10 GLU A 130 ? ? -64.00 -175.09 84 11 ALA A 3 ? ? -118.88 56.17 85 11 ARG A 9 ? ? -56.26 -179.82 86 11 LEU A 31 ? ? 82.75 -35.38 87 11 SER A 53 ? ? -171.42 129.95 88 11 PRO A 69 ? ? -69.81 0.80 89 11 THR A 70 ? ? -141.20 44.46 90 11 ALA A 115 ? ? -134.79 -45.23 91 11 MET A 118 ? ? 63.41 159.52 92 11 SER A 122 ? ? -99.00 36.14 93 11 SER A 129 ? ? -165.58 45.39 94 12 LEU A 8 ? ? 60.49 179.79 95 12 ARG A 9 ? ? 179.95 83.50 96 12 LYS A 117 ? ? -143.64 29.26 97 12 PRO A 127 ? ? -69.72 -171.60 98 12 SER A 129 ? ? -54.16 172.77 99 12 LYS A 131 ? ? 62.59 93.66 100 13 ARG A 4 ? ? -125.87 -62.80 101 13 ASN A 5 ? ? -173.87 -37.24 102 13 PRO A 69 ? ? -69.74 3.35 103 13 THR A 70 ? ? -160.92 60.81 104 13 SER A 72 ? ? -65.41 -169.65 105 13 ALA A 115 ? ? -99.35 32.01 106 13 LYS A 117 ? ? -166.01 31.60 107 13 PRO A 124 ? ? -69.72 -171.52 108 14 ALA A 3 ? ? -163.50 -56.32 109 14 ARG A 4 ? ? -164.29 48.46 110 14 ASN A 5 ? ? -173.12 -169.69 111 14 GLU A 48 ? ? 56.87 4.41 112 14 GLU A 52 ? ? -92.84 32.98 113 14 LYS A 54 ? ? -68.78 -70.63 114 14 PRO A 69 ? ? -69.77 1.10 115 14 THR A 70 ? ? -148.47 42.47 116 14 LYS A 117 ? ? -143.34 -66.54 117 14 ASN A 134 ? ? 52.53 -170.22 118 15 ASN A 5 ? ? -147.02 -60.05 119 15 PRO A 69 ? ? -69.81 2.01 120 15 THR A 70 ? ? -158.63 57.11 121 15 ALA A 115 ? ? -173.42 45.25 122 15 MET A 118 ? ? 53.75 70.06 123 15 PRO A 119 ? ? -69.74 94.89 124 15 PRO A 127 ? ? -69.81 87.50 125 16 ALA A 3 ? ? -91.33 -66.76 126 16 ARG A 4 ? ? -143.74 -60.13 127 16 ASN A 5 ? ? -154.72 -51.32 128 16 LYS A 26 ? ? -142.07 25.11 129 16 ARG A 30 ? ? -107.67 -152.07 130 16 THR A 70 ? ? -89.85 31.66 131 16 THR A 114 ? ? -145.93 31.14 132 16 ALA A 115 ? ? -133.11 -42.85 133 16 MET A 118 ? ? 63.26 159.82 134 16 SER A 120 ? ? -160.24 115.68 135 16 SER A 129 ? ? -96.52 35.18 136 17 LYS A 26 ? ? -141.96 12.91 137 17 THR A 70 ? ? -105.48 45.28 138 17 THR A 114 ? ? -140.11 35.17 139 17 LYS A 117 ? ? -173.28 31.82 140 17 PRO A 119 ? ? -69.82 -175.97 141 17 SER A 129 ? ? -65.40 92.25 142 17 LYS A 131 ? ? 61.96 170.55 143 18 ALA A 3 ? ? -147.90 -45.71 144 18 ASN A 5 ? ? -176.94 -179.92 145 18 PRO A 69 ? ? -69.71 1.69 146 18 THR A 70 ? ? -162.31 66.49 147 18 LYS A 117 ? ? 60.31 60.19 148 18 SER A 120 ? ? -155.23 -66.33 149 18 THR A 121 ? ? 60.49 95.93 150 18 SER A 122 ? ? -141.04 56.39 151 19 ALA A 3 ? ? -163.92 78.99 152 19 ARG A 4 ? ? -152.74 -65.03 153 19 SER A 6 ? ? 62.56 163.79 154 19 VAL A 7 ? ? -126.73 -76.03 155 19 ARG A 9 ? ? 171.32 109.09 156 19 LEU A 46 ? ? -38.89 127.65 157 19 THR A 70 ? ? -151.86 56.46 158 19 LYS A 95 ? ? -139.85 -41.56 159 19 PRO A 119 ? ? -69.77 -171.77 160 19 SER A 120 ? ? -65.92 -177.66 161 19 PRO A 127 ? ? -69.76 -171.38 162 19 ASN A 134 ? ? 57.68 -170.10 163 20 ASN A 5 ? ? 53.03 79.61 164 20 SER A 6 ? ? 57.40 -169.60 165 20 ARG A 9 ? ? -174.17 38.60 166 20 PRO A 69 ? ? -69.79 1.10 167 20 GLU A 111 ? ? -118.78 -76.99 168 20 THR A 112 ? ? 73.05 -5.67 169 20 ALA A 115 ? ? -178.41 62.30 170 20 THR A 121 ? ? -177.61 116.46 171 20 ARG A 123 ? ? -151.01 66.46 172 20 PRO A 124 ? ? -69.72 -173.91 173 20 SER A 129 ? ? -146.18 -47.73 174 20 GLU A 130 ? ? 61.91 98.74 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MYRISTIC ACID' MYR 3 ;(2R)-3-{[(R)-HYDROXY{[(1R,2R,3S,4R,5R,6S)-2,3,6-TRIHYDROXY-4,5-BIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}PROPANE-1,2-DIYL DIBUTANOATE ; PBU #