HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 13-JUN-08 2K4M TITLE SOLUTION NMR STRUCTURE OF M. THERMOAUTOTROPHICUM PROTEIN MTH_1000, TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TR8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0146 PROTEIN MTH_1000; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TR8_PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS STR. SOURCE 3 DELTA H; SOURCE 4 ORGANISM_TAXID: 187420; SOURCE 5 GENE: MTH_1000; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 GOLD MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ALPHA+BETA, ROSSMANN FOLD, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.ELETSKY,D.SUKUMARAN,A.SEMESI,V.GUIDO,A.YEE,C.ARROWSMITH, AUTHOR 2 T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 16-MAR-22 2K4M 1 REMARK REVDAT 3 12-NOV-14 2K4M 1 KEYWDS REVDAT 2 24-FEB-09 2K4M 1 VERSN REVDAT 1 12-AUG-08 2K4M 0 JRNL AUTH A.ELETSKY,D.SUKUMARAN,A.SEMESI,V.GUIDO,A.YEE,C.ARROWSMITH, JRNL AUTH 2 T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF M. THERMOAUTOTROPHICUM PROTEIN JRNL TITL 2 MTH_1000, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET JRNL TITL 3 TR8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1.3, CNS 1.2 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K4M COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000100669. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 300; 450 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 TR8 PROTEIN, 10 MM SODIUM REMARK 210 PHOSPHATE, 300 MM SODIUM REMARK 210 CHLORIDE, 1 MM BENZAMIDINE, 10 REMARK 210 MM DTT, 90% H2O/10% D2O; 0.8 MM REMARK 210 [U-5% 13C; U-100% 15N] TR8 REMARK 210 PROTEIN, 10 MM SODIUM PHOSPHATE, REMARK 210 450 MM SODIUM CHLORIDE, 1 MM REMARK 210 BENZAMIDINE, 10 MM DTT, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HBHA(CO)NH; 3D 1H-15N, REMARK 210 13CALI,13CARO NOESY; 3D HCCH- REMARK 210 COSY ALIPHATIC; 3D HCCH-TOCSY REMARK 210 ALIPHATIC; 3D HCCH-COSY AROMATIC; REMARK 210 2D 1H-13C HSQC METHYL; 2D LR 1H- REMARK 210 15N HSQC (HIS) REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 1.3, VNMR 6.1C, VNMRJ REMARK 210 2.1B, PROSA 6.0.2, XEASY 1.3.13, REMARK 210 CARA 1.8.4, CSI 2.0, TALOS REMARK 210 2003.027.13.05, CYANA 2.1, REMARK 210 AUTOSTRUCTURE 2.2.1, AUTOASSIGN REMARK 210 1.15.1, PSVS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 52 HZ3 LYS A 56 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 9 46.01 -141.35 REMARK 500 1 HIS A 10 98.44 -67.76 REMARK 500 1 SER A 19 45.03 -85.30 REMARK 500 1 SER A 33 -97.40 -112.67 REMARK 500 1 LYS A 68 71.73 42.31 REMARK 500 1 ALA A 100 43.01 -76.97 REMARK 500 1 GLU A 101 -34.45 -140.27 REMARK 500 1 VAL A 128 65.22 60.21 REMARK 500 2 SER A 3 41.88 -85.11 REMARK 500 2 SER A 4 -169.66 -101.34 REMARK 500 2 SER A 11 44.11 -154.96 REMARK 500 2 HIS A 20 -83.85 -95.60 REMARK 500 2 SER A 33 -71.73 -122.01 REMARK 500 2 ALA A 44 -76.58 -55.79 REMARK 500 2 LYS A 68 88.86 65.20 REMARK 500 2 ARG A 76 25.24 -79.92 REMARK 500 2 SER A 81 70.53 -158.68 REMARK 500 2 ARG A 97 80.86 49.44 REMARK 500 2 PRO A 121 -153.59 -81.93 REMARK 500 2 ARG A 140 -5.55 -153.73 REMARK 500 3 SER A 33 -83.73 -128.11 REMARK 500 3 ASP A 77 -84.74 -69.94 REMARK 500 3 ASP A 78 -169.64 -163.24 REMARK 500 3 ILE A 79 -28.04 -144.19 REMARK 500 3 SER A 81 75.17 -150.13 REMARK 500 3 ARG A 97 77.25 53.77 REMARK 500 3 PRO A 121 -159.70 -89.98 REMARK 500 3 VAL A 128 47.70 -83.08 REMARK 500 3 LYS A 132 147.79 71.77 REMARK 500 4 SER A 33 -76.63 -97.03 REMARK 500 4 LEU A 48 60.87 -104.64 REMARK 500 4 LYS A 68 69.72 39.72 REMARK 500 4 ARG A 76 48.61 -85.90 REMARK 500 4 ASP A 77 -154.56 -89.17 REMARK 500 4 ALA A 100 31.15 -78.54 REMARK 500 4 PRO A 121 -158.95 -82.78 REMARK 500 4 VAL A 128 79.53 68.71 REMARK 500 4 THR A 129 -168.95 -165.65 REMARK 500 5 SER A 3 98.00 -66.63 REMARK 500 5 SER A 4 53.00 -94.32 REMARK 500 5 SER A 11 98.60 -66.64 REMARK 500 5 HIS A 20 -152.26 -164.35 REMARK 500 5 SER A 33 -79.17 -94.68 REMARK 500 5 PHE A 47 58.29 -96.85 REMARK 500 5 LYS A 68 70.29 50.36 REMARK 500 5 ARG A 97 76.91 52.66 REMARK 500 5 ALA A 100 33.55 -78.13 REMARK 500 5 LYS A 132 -32.80 -144.13 REMARK 500 6 HIS A 10 101.98 64.35 REMARK 500 6 ARG A 17 59.95 -141.74 REMARK 500 REMARK 500 THIS ENTRY HAS 199 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TR8 RELATED DB: TARGETDB DBREF 2K4M A 21 153 UNP O27081 YA00_METTH 1 133 SEQADV 2K4M MET A 1 UNP O27081 EXPRESSION TAG SEQADV 2K4M GLY A 2 UNP O27081 EXPRESSION TAG SEQADV 2K4M SER A 3 UNP O27081 EXPRESSION TAG SEQADV 2K4M SER A 4 UNP O27081 EXPRESSION TAG SEQADV 2K4M HIS A 5 UNP O27081 EXPRESSION TAG SEQADV 2K4M HIS A 6 UNP O27081 EXPRESSION TAG SEQADV 2K4M HIS A 7 UNP O27081 EXPRESSION TAG SEQADV 2K4M HIS A 8 UNP O27081 EXPRESSION TAG SEQADV 2K4M HIS A 9 UNP O27081 EXPRESSION TAG SEQADV 2K4M HIS A 10 UNP O27081 EXPRESSION TAG SEQADV 2K4M SER A 11 UNP O27081 EXPRESSION TAG SEQADV 2K4M SER A 12 UNP O27081 EXPRESSION TAG SEQADV 2K4M GLY A 13 UNP O27081 EXPRESSION TAG SEQADV 2K4M LEU A 14 UNP O27081 EXPRESSION TAG SEQADV 2K4M VAL A 15 UNP O27081 EXPRESSION TAG SEQADV 2K4M PRO A 16 UNP O27081 EXPRESSION TAG SEQADV 2K4M ARG A 17 UNP O27081 EXPRESSION TAG SEQADV 2K4M GLY A 18 UNP O27081 EXPRESSION TAG SEQADV 2K4M SER A 19 UNP O27081 EXPRESSION TAG SEQADV 2K4M HIS A 20 UNP O27081 EXPRESSION TAG SEQRES 1 A 153 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 153 LEU VAL PRO ARG GLY SER HIS MET TRP ASN ASP LEU ALA SEQRES 3 A 153 VAL TYR ILE ILE ARG CYS SER GLY PRO GLY THR ARG VAL SEQRES 4 A 153 VAL GLU VAL GLY ALA GLY ARG PHE LEU TYR VAL SER ASP SEQRES 5 A 153 TYR ILE ARG LYS HIS SER LYS VAL ASP LEU VAL LEU THR SEQRES 6 A 153 ASP ILE LYS PRO SER HIS GLY GLY ILE VAL ARG ASP ASP SEQRES 7 A 153 ILE THR SER PRO ARG MET GLU ILE TYR ARG GLY ALA ALA SEQRES 8 A 153 LEU ILE TYR SER ILE ARG PRO PRO ALA GLU ILE HIS SER SEQRES 9 A 153 SER LEU MET ARG VAL ALA ASP ALA VAL GLY ALA ARG LEU SEQRES 10 A 153 ILE ILE LYS PRO LEU THR GLY GLU ASP ILE VAL THR GLU SEQRES 11 A 153 ARG LYS MET LYS LEU VAL ASN TYR GLY ARG THR TYR PHE SEQRES 12 A 153 TYR GLU TYR ILE ALA GLU VAL ARG SER ARG HELIX 1 1 SER A 19 SER A 33 1 15 HELIX 2 2 LEU A 48 SER A 58 1 11 HELIX 3 3 ARG A 83 ARG A 88 1 6 HELIX 4 4 ILE A 102 GLY A 114 1 13 SHEET 1 A 7 ILE A 74 VAL A 75 0 SHEET 2 A 7 ASP A 61 THR A 65 1 N LEU A 64 O VAL A 75 SHEET 3 A 7 ARG A 38 VAL A 42 1 N VAL A 39 O VAL A 63 SHEET 4 A 7 ALA A 90 ILE A 96 1 O TYR A 94 N VAL A 42 SHEET 5 A 7 ARG A 116 LYS A 120 1 O ARG A 116 N ILE A 93 SHEET 6 A 7 THR A 141 ILE A 147 -1 O TYR A 144 N ILE A 119 SHEET 7 A 7 LYS A 134 TYR A 138 -1 N VAL A 136 O PHE A 143 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1