HEADER VIRAL PROTEIN 16-JUN-08 2K4Q TITLE THE SOLUTION STRUCTURE OF GPV, THE MAJOR TAIL PROTEIN FROM TITLE 2 BACTERIOPHAGE LAMBDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR TAIL PROTEIN V; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE LAMBDA; SOURCE 3 ORGANISM_TAXID: 10710; SOURCE 4 GENE: V; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET32B KEYWDS GPV, BACTERIOPHAGE LAMBDA, MAJOR TAIL PROTEIN, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.G.PELL,V.KANELIS,P.HOWELL,A.R.DAVIDSON REVDAT 4 14-JUN-23 2K4Q 1 REMARK REVDAT 3 19-FEB-20 2K4Q 1 REMARK SEQADV REVDAT 2 28-APR-09 2K4Q 1 JRNL REVDAT 1 17-FEB-09 2K4Q 0 JRNL AUTH L.G.PELL,V.KANELIS,L.W.DONALDSON,P.L.HOWELL,A.R.DAVIDSON JRNL TITL THE PHAGE LAMBDA MAJOR TAIL PROTEIN STRUCTURE REVEALS A JRNL TITL 2 COMMON EVOLUTION FOR LONG-TAILED PHAGES AND THE TYPE VI JRNL TITL 3 BACTERIAL SECRETION SYSTEM. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 4160 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19251647 JRNL DOI 10.1073/PNAS.0900044106 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K4Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000100673. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM PHOSPHATE, 0.6 MM REMARK 210 DSS, 200 MM SODIUM CHLORIDE, 8- REMARK 210 10 % D2O, 0.1% % SODIUM AZIDE, 1 REMARK 210 MM [U-100% 13C; U-100% 15N] GPV REMARK 210 PROTEIN, 90% H2O/10% D2O; 1 MM REMARK 210 [U-100% 13C; U-100% 15N] GPV REMARK 210 PROTEIN, 90-99 % D2O, 0.6 MM DSS, REMARK 210 50 MM SODIUM PHOSPHATE, 200 MM REMARK 210 SODIUM CHLORIDE, 0.1 % SODIUM REMARK 210 AZIDE, 90% D2O, 10% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCACB; 3D 1H-15N NOESY; 3D REMARK 210 CBCA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HCCH-COSY; 3D 1H-13C NOESY; 3D REMARK 210 C(CO)NH; 3D H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.2.2, NMRPIPE REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 32 71.80 -157.68 REMARK 500 1 PRO A 50 78.89 -69.83 REMARK 500 1 ASP A 59 -175.15 -60.70 REMARK 500 1 LEU A 63 121.51 -179.45 REMARK 500 1 ASP A 65 113.55 -176.62 REMARK 500 1 PRO A 91 97.29 -69.75 REMARK 500 1 PRO A 152 -171.06 -69.70 REMARK 500 2 MET A 3 77.80 -115.14 REMARK 500 2 PRO A 7 -173.93 -69.74 REMARK 500 2 SER A 26 107.81 -51.97 REMARK 500 2 PRO A 29 -170.66 -69.74 REMARK 500 2 ASN A 32 74.25 -151.20 REMARK 500 2 TRP A 39 -177.37 -63.36 REMARK 500 2 LEU A 42 -60.15 -107.76 REMARK 500 2 ALA A 43 -177.46 -178.59 REMARK 500 2 PRO A 50 87.27 -69.83 REMARK 500 2 ASP A 60 126.11 -170.41 REMARK 500 2 LEU A 63 116.50 -170.89 REMARK 500 2 ASP A 64 142.10 -172.61 REMARK 500 2 ASP A 67 104.89 -176.63 REMARK 500 2 SER A 79 65.12 -111.96 REMARK 500 2 SER A 128 22.49 -155.48 REMARK 500 2 SER A 153 146.69 -170.99 REMARK 500 3 PRO A 12 79.52 -69.78 REMARK 500 3 ASP A 28 68.35 -118.83 REMARK 500 3 ASN A 32 71.85 -162.55 REMARK 500 3 TRP A 39 -175.20 -58.67 REMARK 500 3 ALA A 43 -179.24 -179.67 REMARK 500 3 PRO A 50 96.00 -69.83 REMARK 500 3 GLU A 56 41.62 -100.13 REMARK 500 3 SER A 61 -70.37 -146.07 REMARK 500 3 TYR A 62 118.03 64.46 REMARK 500 3 LEU A 63 19.61 -150.43 REMARK 500 3 ASP A 65 67.31 -115.93 REMARK 500 3 SER A 79 69.88 -117.01 REMARK 500 3 SER A 128 16.16 -141.32 REMARK 500 3 PRO A 152 -175.09 -69.69 REMARK 500 4 LYS A 24 -175.87 -179.76 REMARK 500 4 PRO A 29 -171.38 -69.75 REMARK 500 4 ASN A 32 76.82 -150.21 REMARK 500 4 ALA A 43 -174.76 -178.74 REMARK 500 4 PRO A 50 89.16 -69.81 REMARK 500 4 THR A 54 43.78 37.30 REMARK 500 4 ASP A 64 117.95 -176.58 REMARK 500 4 ASP A 65 110.61 -169.88 REMARK 500 4 SER A 79 72.67 -109.49 REMARK 500 4 PRO A 91 96.52 -69.69 REMARK 500 4 ASP A 107 -172.90 -59.23 REMARK 500 4 SER A 128 15.68 -145.06 REMARK 500 4 PRO A 152 -175.39 -69.73 REMARK 500 REMARK 500 THIS ENTRY HAS 278 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15807 RELATED DB: BMRB DBREF 2K4Q A 4 156 UNP P03733 VMTV_LAMBD 1 153 SEQADV 2K4Q GLY A 1 UNP P03733 EXPRESSION TAG SEQADV 2K4Q ALA A 2 UNP P03733 EXPRESSION TAG SEQADV 2K4Q MET A 3 UNP P03733 EXPRESSION TAG SEQRES 1 A 156 GLY ALA MET MET PRO VAL PRO ASN PRO THR MET PRO VAL SEQRES 2 A 156 LYS GLY ALA GLY THR THR LEU TRP VAL TYR LYS GLY SER SEQRES 3 A 156 GLY ASP PRO TYR ALA ASN PRO LEU SER ASP VAL ASP TRP SEQRES 4 A 156 SER ARG LEU ALA LYS VAL LYS ASP LEU THR PRO GLY GLU SEQRES 5 A 156 LEU THR ALA GLU SER TYR ASP ASP SER TYR LEU ASP ASP SEQRES 6 A 156 GLU ASP ALA ASP TRP THR ALA THR GLY GLN GLY GLN LYS SEQRES 7 A 156 SER ALA GLY ASP THR SER PHE THR LEU ALA TRP MET PRO SEQRES 8 A 156 GLY GLU GLN GLY GLN GLN ALA LEU LEU ALA TRP PHE ASN SEQRES 9 A 156 GLU GLY ASP THR ARG ALA TYR LYS ILE ARG PHE PRO ASN SEQRES 10 A 156 GLY THR VAL ASP VAL PHE ARG GLY TRP VAL SER SER ILE SEQRES 11 A 156 GLY LYS ALA VAL THR ALA LYS GLU VAL ILE THR ARG THR SEQRES 12 A 156 VAL LYS VAL THR ASN VAL GLY ARG PRO SER MET ALA GLU HELIX 1 1 GLY A 95 GLY A 106 1 12 SHEET 1 A 7 VAL A 120 GLY A 125 0 SHEET 2 A 7 ARG A 109 ARG A 114 -1 N TYR A 111 O PHE A 123 SHEET 3 A 7 THR A 19 VAL A 22 -1 N TRP A 21 O LYS A 112 SHEET 4 A 7 SER A 40 THR A 49 -1 O SER A 40 N VAL A 22 SHEET 5 A 7 THR A 83 TRP A 89 -1 O SER A 84 N THR A 49 SHEET 6 A 7 VAL A 139 VAL A 146 -1 O VAL A 144 N PHE A 85 SHEET 7 A 7 VAL A 134 ALA A 136 -1 N ALA A 136 O VAL A 139 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1