HEADER UNKNOWN FUNCTION 26-JUN-08 2K56 TITLE BANK VOLE PRION PROTEIN (121-231) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 121-231; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYODES GLAREOLUS; SOURCE 3 ORGANISM_COMMON: BANK VOLE; SOURCE 4 ORGANISM_TAXID: 447135; SOURCE 5 GENE: PRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PRSETA KEYWDS PRION PROTEIN, MEMBRANE, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.CHRISTEN,S.HORNEMANN,K.WUTHRICH REVDAT 4 16-MAR-22 2K56 1 REMARK SEQADV REVDAT 3 24-FEB-09 2K56 1 VERSN REVDAT 2 07-OCT-08 2K56 1 JRNL REVDAT 1 23-SEP-08 2K56 0 JRNL AUTH B.CHRISTEN,D.R.PEREZ,S.HORNEMANN,K.WUTHRICH JRNL TITL NMR STRUCTURE OF THE BANK VOLE PRION PROTEIN AT 20 DEGREES C JRNL TITL 2 CONTAINS A STRUCTURED LOOP OF RESIDUES 165-171. JRNL REF J.MOL.BIOL. V. 383 306 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18773909 JRNL DOI 10.1016/J.JMB.2008.08.045 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPAL 1.2 REMARK 3 AUTHORS : LUGINBUHL, GUNTERT, BILLETER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K56 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000100689. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293.2 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0.01 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 15N] PRION PROTEIN, REMARK 210 10 % D2O, 90 % H2O, 10 MM [U-2H] REMARK 210 SODIUM ACETATE, 90% H2O/10% D2O; REMARK 210 1 MM [U-99% 13C; U-99% 15N] REMARK 210 PRION PROTEIN, 10 % D2O, 90 % REMARK 210 H2O, 10 MM [U-2H] SODIUM ACETATE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.5.5, ATNOS/CANDID 1.2, REMARK 210 DYANA 1.0.3, MOLMOL 2K.2, XWINNMR REMARK 210 METHOD USED : OPAL (WATER SHELL), TORSION REMARK 210 ANGLE DYNAMICS, REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 149 OD1 ASP A 202 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 1 TYR A 226 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 3 VAL A 203 CA - CB - CG2 ANGL. DEV. = 11.0 DEGREES REMARK 500 6 PHE A 175 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 7 ARG A 151 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 7 ARG A 164 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 10 TYR A 157 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 11 VAL A 209 CA - CB - CG1 ANGL. DEV. = 11.5 DEGREES REMARK 500 12 ARG A 208 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 12 ARG A 229 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 13 TYR A 150 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 15 TYR A 157 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 16 VAL A 209 CA - CB - CG1 ANGL. DEV. = 13.3 DEGREES REMARK 500 17 ARG A 151 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 17 PHE A 175 CB - CG - CD1 ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 170 -0.25 -151.93 REMARK 500 1 THR A 190 -48.30 -142.37 REMARK 500 2 MET A 134 -165.03 -112.33 REMARK 500 2 ASN A 171 151.53 148.45 REMARK 500 2 HIS A 187 -57.31 -137.15 REMARK 500 2 THR A 190 -48.40 -149.63 REMARK 500 2 PHE A 198 -164.47 -125.29 REMARK 500 3 ASN A 170 -59.64 -128.09 REMARK 500 3 HIS A 187 -71.67 -123.63 REMARK 500 3 THR A 190 -41.09 -143.70 REMARK 500 3 SER A 230 -165.11 95.44 REMARK 500 4 ARG A 136 117.47 -25.08 REMARK 500 4 GLU A 152 -66.03 -122.26 REMARK 500 4 GLN A 168 20.25 -141.41 REMARK 500 4 ASN A 170 -81.49 -67.23 REMARK 500 4 THR A 193 1.12 -67.08 REMARK 500 4 PHE A 198 -169.29 -109.43 REMARK 500 4 GLU A 211 -72.26 -51.51 REMARK 500 4 TYR A 226 49.66 -74.02 REMARK 500 4 SER A 230 164.08 81.81 REMARK 500 5 MET A 138 36.53 -79.01 REMARK 500 5 HIS A 187 -65.62 -123.66 REMARK 500 5 THR A 188 -72.34 -62.73 REMARK 500 5 GLU A 227 69.20 -157.45 REMARK 500 6 PHE A 141 -83.09 -131.76 REMARK 500 6 GLU A 152 -48.87 -131.20 REMARK 500 6 VAL A 166 -33.00 -39.28 REMARK 500 6 ASN A 170 -67.87 -102.65 REMARK 500 6 VAL A 176 -66.57 -98.70 REMARK 500 6 HIS A 187 -65.44 -127.30 REMARK 500 6 THR A 190 -55.93 -149.44 REMARK 500 6 TYR A 226 83.21 -58.10 REMARK 500 6 SER A 230 118.33 76.09 REMARK 500 7 SER A 132 141.74 88.74 REMARK 500 7 MET A 138 22.50 -71.42 REMARK 500 7 HIS A 140 73.11 -115.76 REMARK 500 7 VAL A 189 49.12 -83.74 REMARK 500 7 THR A 190 -47.54 -140.70 REMARK 500 7 TYR A 226 -159.39 43.78 REMARK 500 7 GLU A 227 64.01 93.37 REMARK 500 8 SER A 120 136.10 75.23 REMARK 500 8 VAL A 121 175.24 53.67 REMARK 500 8 ARG A 136 116.60 -32.19 REMARK 500 8 GLN A 168 65.85 -119.78 REMARK 500 8 THR A 188 -76.54 -97.10 REMARK 500 8 ARG A 229 -69.67 -27.59 REMARK 500 9 LEU A 125 -179.55 57.66 REMARK 500 9 ASN A 170 -6.32 -148.58 REMARK 500 9 VAL A 176 -57.45 -122.30 REMARK 500 9 HIS A 187 -79.95 -130.36 REMARK 500 REMARK 500 THIS ENTRY HAS 132 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 119 SER A 120 8 -148.19 REMARK 500 GLY A 126 GLY A 127 18 -148.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 148 0.09 SIDE CHAIN REMARK 500 1 TYR A 169 0.08 SIDE CHAIN REMARK 500 1 TYR A 226 0.08 SIDE CHAIN REMARK 500 2 TYR A 128 0.07 SIDE CHAIN REMARK 500 2 TYR A 225 0.09 SIDE CHAIN REMARK 500 3 ARG A 156 0.08 SIDE CHAIN REMARK 500 3 TYR A 218 0.07 SIDE CHAIN REMARK 500 3 TYR A 226 0.15 SIDE CHAIN REMARK 500 3 ARG A 229 0.10 SIDE CHAIN REMARK 500 4 TYR A 157 0.09 SIDE CHAIN REMARK 500 4 TYR A 169 0.07 SIDE CHAIN REMARK 500 4 TYR A 218 0.09 SIDE CHAIN REMARK 500 5 ARG A 136 0.12 SIDE CHAIN REMARK 500 5 ARG A 148 0.12 SIDE CHAIN REMARK 500 5 TYR A 149 0.12 SIDE CHAIN REMARK 500 5 TYR A 150 0.10 SIDE CHAIN REMARK 500 5 TYR A 169 0.08 SIDE CHAIN REMARK 500 6 ARG A 136 0.09 SIDE CHAIN REMARK 500 6 TYR A 163 0.10 SIDE CHAIN REMARK 500 6 TYR A 169 0.08 SIDE CHAIN REMARK 500 7 ARG A 136 0.16 SIDE CHAIN REMARK 500 7 ARG A 229 0.08 SIDE CHAIN REMARK 500 8 ARG A 164 0.11 SIDE CHAIN REMARK 500 8 TYR A 226 0.07 SIDE CHAIN REMARK 500 9 ARG A 148 0.10 SIDE CHAIN REMARK 500 9 TYR A 149 0.11 SIDE CHAIN REMARK 500 9 ARG A 208 0.09 SIDE CHAIN REMARK 500 10 TYR A 128 0.07 SIDE CHAIN REMARK 500 10 TYR A 225 0.08 SIDE CHAIN REMARK 500 12 TYR A 169 0.11 SIDE CHAIN REMARK 500 12 ARG A 208 0.09 SIDE CHAIN REMARK 500 13 ARG A 136 0.10 SIDE CHAIN REMARK 500 13 ARG A 208 0.08 SIDE CHAIN REMARK 500 13 ARG A 229 0.08 SIDE CHAIN REMARK 500 14 TYR A 150 0.11 SIDE CHAIN REMARK 500 17 TYR A 150 0.08 SIDE CHAIN REMARK 500 17 TYR A 163 0.08 SIDE CHAIN REMARK 500 19 ARG A 148 0.12 SIDE CHAIN REMARK 500 19 ARG A 156 0.09 SIDE CHAIN REMARK 500 19 TYR A 157 0.08 SIDE CHAIN REMARK 500 19 TYR A 226 0.10 SIDE CHAIN REMARK 500 20 TYR A 150 0.14 SIDE CHAIN REMARK 500 20 ARG A 164 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15824 RELATED DB: BMRB DBREF 2K56 A 121 231 UNP Q8VHV5 Q8VHV5_MYOGA 121 231 SEQADV 2K56 GLY A 119 UNP Q8VHV5 EXPRESSION TAG SEQADV 2K56 SER A 120 UNP Q8VHV5 EXPRESSION TAG SEQRES 1 A 113 GLY SER VAL VAL GLY GLY LEU GLY GLY TYR MET LEU GLY SEQRES 2 A 113 SER ALA MET SER ARG PRO MET ILE HIS PHE GLY ASN ASP SEQRES 3 A 113 TRP GLU ASP ARG TYR TYR ARG GLU ASN MET ASN ARG TYR SEQRES 4 A 113 PRO ASN GLN VAL TYR TYR ARG PRO VAL ASP GLN TYR ASN SEQRES 5 A 113 ASN GLN ASN ASN PHE VAL HIS ASP CYS VAL ASN ILE THR SEQRES 6 A 113 ILE LYS GLN HIS THR VAL THR THR THR THR LYS GLY GLU SEQRES 7 A 113 ASN PHE THR GLU THR ASP VAL LYS MET MET GLU ARG VAL SEQRES 8 A 113 VAL GLU GLN MET CYS VAL THR GLN TYR GLN LYS GLU SER SEQRES 9 A 113 GLN ALA TYR TYR GLU GLY ARG SER SER HELIX 1 1 ASN A 143 MET A 154 1 12 HELIX 2 2 PRO A 165 TYR A 169 5 5 HELIX 3 3 ASN A 171 GLU A 196 1 26 HELIX 4 4 THR A 199 TYR A 226 1 28 SHEET 1 A 2 MET A 129 LEU A 130 0 SHEET 2 A 2 TYR A 162 TYR A 163 -1 O TYR A 163 N MET A 129 SSBOND 1 CYS A 179 CYS A 214 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1