HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-JUN-08 2K57 TITLE SOLUTION NMR STRUCTURE OF PUTATIVE LIPOPROTEIN FROM PSEUDOMONAS TITLE 2 SYRINGAE GENE LOCUS PSPTO2350. NORTHEAST STRUCTURAL GENOMICS TARGET TITLE 3 PSR76A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE LIPOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE PV. PHASEOLICOLA 1448A; SOURCE 3 ORGANISM_TAXID: 264730; SOURCE 4 GENE: PSPPH_2109; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET 21-23C KEYWDS PUTATIVE LIPOPROTEIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 3 LIPOPROTEIN, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.HANG,J.A.ARAMINI,P.ROSSI,D.WANG,M.JIANG,M.MAGLAQUI,R.XIAO,J.LIU, AUTHOR 2 M.C.BARAN,T.B.ACTON,B.ROST,G.T.MONTELIONE,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG) REVDAT 3 19-FEB-20 2K57 1 REMARK REVDAT 2 24-FEB-09 2K57 1 VERSN REVDAT 1 30-SEP-08 2K57 0 JRNL AUTH P.ROSSI,J.A.ARAMINI,D.HANG,R.XIAO,T.B.ACTON,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF PUTATIVE LIPOPROTEIN FROM JRNL TITL 2 PSEUDOMONAS SYRINGAE GENE LOCUS PSPTO2350. NORTHEAST JRNL TITL 3 STRUCTURAL GENOMICS TARGET PSR76A. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K57 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000100690. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.07 MM [U-100% 13C 15N] PSR76A, REMARK 210 50 UM DSS, 10 MM DTT, 100 MM REMARK 210 SODIUM CHLORIDE, 0.02 % SODIUM REMARK 210 AZIDE, 20 MM MES, 5 MM CALCIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O; 1.07 REMARK 210 MM [5% 13C; U-100% 15N] PSR76A, REMARK 210 50 UM DSS, 10 MM DTT, 100 MM REMARK 210 SODIUM CHLORIDE, 0.02 % SODIUM REMARK 210 AZIDE, 20 MM MES, 5 MM CALCIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC CT ARO; 3D HNCO; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HN(CA)CO; 3D 1H-13C -15N SIM REMARK 210 NOESY; N15-T1; N15- T2(CPMG); 3J REMARK 210 NHHA; 3D HCCH-COSY; 3D HCCH- REMARK 210 TOCSY; 3D CCH- TOCSY; 3D CC(CO) REMARK 210 NH-TOCSY; 15N HETNOE; 2D 1H-13C REMARK 210 HSQC STEREO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, AUTOASSIGN 2.4.0, REMARK 210 NMRPIPE, TOPSPIN 2.1, SPARKY REMARK 210 3.113, TALOS, RPF(AUTOSTRUCTURE) REMARK 210 2.2.1, MOLMOL, PSVS, PDBSTAT 5.0, REMARK 210 MOLPROBITY, PROCHECK REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: MONOMER BY GEL FILTRATION CHROMATOGRAPHY/LIGHT SCATTERING. REMARK 210 STRUCTURE DETERMINED BY TRIPLE RESONANCE NMR SPECTROSCOPY. NOESY REMARK 210 ASSIGNMENTS BY CYANA2.1. 20 OF 100 STRUCTURES LOWEST TARGET REMARK 210 FUNCTION SELECTED WITH CYANA2.1. SELECTED MODELS ARE FURTHER REMARK 210 REFINED USING CNS IN EXPLICIT WATER SHELL (NILGES PROTOCOL REMARK 210 BACKBONE 98.2%, SIDECHAIN 91.0%, AROMATIC (SC) 55.6%, VL METHYL REMARK 210 STEREOSPECIFIC 100%, UNAMBIGUOS SIDECHAIN NH2 100%. STRUCTURE REMARK 210 BASED ON 1027 NOE, 133 DIHE. MAX NOE VIOLATION: 0.14 A (1MODEL); REMARK 210 MAX DIHE VIOLATION: 3.1 DEG. 2 TOTAL CLOSE ORDERED RESIDUES REMARK 210 RANGES: 1-71 FOR [S(PHI)+S(PSI)] > 1.8. SECONDARY STRUCTURE - REMARK 210 BETA STRANDS: (8-17, 20-26, 29-33, 51- 60, 65-70). RMSD 0.4 REMARK 210 BACKBONE, 0.7 ALL HEAVY ATOMS. RAMA. CLASH: 11.98/-0.53 (RAW/Z). REMARK 210 RPF SCORES ALL ASSIGNED RESIDUES PRECISION: 0.92, F-MEASURE: REMARK 210 0.95, DP-SCORE: 0.799. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 56 REMARK 465 HIS A 57 REMARK 465 HIS A 58 REMARK 465 HIS A 59 REMARK 465 HIS A 60 REMARK 465 HIS A 61 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 ALA A 2 -176.86 -172.46 REMARK 500 3 ALA A 2 61.57 60.61 REMARK 500 4 ALA A 2 106.86 -55.10 REMARK 500 5 ALA A 2 86.77 -66.03 REMARK 500 6 ALA A 2 86.83 -161.59 REMARK 500 16 SER A 3 118.27 -161.79 REMARK 500 16 LEU A 54 42.06 -106.50 REMARK 500 20 LEU A 54 35.49 -95.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PSR76A RELATED DB: TARGETDB REMARK 900 RELATED ID: 15825 RELATED DB: BMRB DBREF 2K57 A 2 53 UNP Q48JU9 Q48JU9_PSE14 23 74 SEQADV 2K57 MET A 1 UNP Q48JU9 EXPRESSION TAG SEQADV 2K57 LEU A 54 UNP Q48JU9 EXPRESSION TAG SEQADV 2K57 GLU A 55 UNP Q48JU9 EXPRESSION TAG SEQADV 2K57 HIS A 56 UNP Q48JU9 EXPRESSION TAG SEQADV 2K57 HIS A 57 UNP Q48JU9 EXPRESSION TAG SEQADV 2K57 HIS A 58 UNP Q48JU9 EXPRESSION TAG SEQADV 2K57 HIS A 59 UNP Q48JU9 EXPRESSION TAG SEQADV 2K57 HIS A 60 UNP Q48JU9 EXPRESSION TAG SEQADV 2K57 HIS A 61 UNP Q48JU9 EXPRESSION TAG SEQRES 1 A 61 MET ALA SER PRO THR VAL ILE THR LEU ASN ASP GLY ARG SEQRES 2 A 61 GLU ILE GLN ALA VAL ASP THR PRO LYS TYR ASP GLU GLU SEQRES 3 A 61 SER GLY PHE TYR GLU PHE LYS GLN LEU ASP GLY LYS GLN SEQRES 4 A 61 THR ARG ILE ASN LYS ASP GLN VAL ARG THR VAL LYS ASP SEQRES 5 A 61 LEU LEU GLU HIS HIS HIS HIS HIS HIS SHEET 1 A 3 GLU A 14 ALA A 17 0 SHEET 2 A 3 THR A 5 LEU A 9 -1 N THR A 5 O ALA A 17 SHEET 3 A 3 VAL A 47 ASP A 52 -1 O THR A 49 N THR A 8 SHEET 1 B 3 LYS A 22 TYR A 23 0 SHEET 2 B 3 PHE A 29 LYS A 33 -1 O GLU A 31 N LYS A 22 SHEET 3 B 3 GLN A 39 ASN A 43 -1 O ILE A 42 N TYR A 30 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1