HEADER UNKNOWN FUNCTION 30-JUN-08 2K5O TITLE MOUSE PRION PROTEIN (121-231) WITH MUTATION S170N COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PRP, PRP27-30, PRP33-35C, CD230 ANTIGEN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRNP, PRN-P, PRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PRSETA KEYWDS MOUSE PRION PROTEIN, MUTATION, S170N, BANK VOLE, MEMBRANE, PRION, KEYWDS 2 GLYCOPROTEIN, GOLGI APPARATUS, GPI-ANCHOR, HYDROXYLATION, KEYWDS 3 LIPOPROTEIN, POLYMORPHISM, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.R.PEREZ,K.WUTHRICH REVDAT 4 14-JUN-23 2K5O 1 REMARK REVDAT 3 10-NOV-21 2K5O 1 SEQADV REVDAT 2 26-FEB-20 2K5O 1 REMARK SEQADV REVDAT 1 09-DEC-08 2K5O 0 JRNL AUTH B.CHRISTEN,D.R.PEREZ,S.HORNEMANN,K.WUTHRICH JRNL TITL NMR STRUCTURE OF THE BANK VOLE PRION PROTEIN AT 20 DEGREES C JRNL TITL 2 CONTAINS A STRUCTURED LOOP OF RESIDUES 165-171 JRNL REF J.MOL.BIOL. V. 383 306 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18773909 JRNL DOI 10.1016/J.JMB.2008.08.045 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, OPAL 1.2 REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), LUGINBUHL, GUNTERT, REMARK 3 BILLETER AND WUTHRICH (OPAL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K5O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000100707. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.2 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0.01 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4MM [U-99% 13C; U-99% 15N] REMARK 210 PRION PROTEIN, 10% D2O, 90% H2O, REMARK 210 10MM [U-2H] SODIUM ACETATE, 0.02% REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, ATNOS/CANDID 1.2, DYANA REMARK 210 1.0.3, MOLMOL 2K.2 REMARK 210 METHOD USED : OPAL (WATER SHELL) REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 119 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 TYR A 157 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 6 TYR A 157 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 7 TYR A 150 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 7 CYS A 179 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 9 ARG A 136 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 9 CYS A 179 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 10 TYR A 157 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 11 ARG A 156 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 13 VAL A 215 CG1 - CB - CG2 ANGL. DEV. = -10.1 DEGREES REMARK 500 14 TYR A 157 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 16 ARG A 156 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 16 ARG A 156 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 17 VAL A 166 CA - CB - CG2 ANGL. DEV. = 9.3 DEGREES REMARK 500 18 VAL A 161 CA - CB - CG1 ANGL. DEV. = 9.8 DEGREES REMARK 500 18 VAL A 209 CA - CB - CG2 ANGL. DEV. = 11.0 DEGREES REMARK 500 19 TYR A 128 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 170 -62.75 -135.02 REMARK 500 1 THR A 192 -155.25 -74.33 REMARK 500 1 LYS A 194 19.49 -164.95 REMARK 500 1 ARG A 229 11.11 24.28 REMARK 500 1 ARG A 230 116.37 69.08 REMARK 500 2 SER A 132 103.88 45.54 REMARK 500 2 ASN A 170 -69.18 -134.18 REMARK 500 2 THR A 192 -140.75 -94.41 REMARK 500 2 LYS A 194 -47.01 -149.72 REMARK 500 2 ASP A 227 24.03 49.24 REMARK 500 2 ARG A 230 23.95 -64.26 REMARK 500 3 VAL A 122 -69.87 -125.83 REMARK 500 3 LEU A 125 83.20 80.28 REMARK 500 3 SER A 135 98.86 -67.96 REMARK 500 3 ARG A 136 110.48 -39.89 REMARK 500 3 THR A 192 -150.47 -91.76 REMARK 500 3 THR A 193 3.06 82.43 REMARK 500 3 LYS A 194 -97.76 -142.35 REMARK 500 3 ARG A 230 103.35 62.34 REMARK 500 4 VAL A 122 -85.13 -130.13 REMARK 500 4 LEU A 125 118.13 -164.31 REMARK 500 4 SER A 132 146.83 58.68 REMARK 500 4 ASN A 170 -66.00 -131.29 REMARK 500 4 THR A 193 -25.62 179.86 REMARK 500 4 LYS A 194 -8.58 -162.48 REMARK 500 4 ASP A 227 -27.06 59.09 REMARK 500 4 ARG A 229 80.49 24.04 REMARK 500 4 SER A 231 73.40 45.07 REMARK 500 5 VAL A 122 -87.33 -99.72 REMARK 500 5 LEU A 125 45.94 -152.45 REMARK 500 5 THR A 188 5.97 -69.82 REMARK 500 5 THR A 193 -26.71 169.79 REMARK 500 5 LYS A 194 43.51 170.00 REMARK 500 5 ASP A 227 27.77 38.76 REMARK 500 5 ARG A 229 7.64 -65.03 REMARK 500 6 LEU A 125 13.04 -145.73 REMARK 500 6 MET A 138 76.72 -103.71 REMARK 500 6 THR A 192 -159.58 -76.21 REMARK 500 6 LYS A 194 -81.42 -170.75 REMARK 500 6 ASP A 227 15.08 41.24 REMARK 500 7 LEU A 125 45.67 -153.70 REMARK 500 7 SER A 135 109.83 -55.31 REMARK 500 7 PRO A 137 -168.72 -73.15 REMARK 500 7 ASP A 167 -51.24 -29.14 REMARK 500 7 ASN A 170 -71.93 -135.65 REMARK 500 7 THR A 193 -16.25 -151.33 REMARK 500 7 LYS A 194 -57.34 -160.49 REMARK 500 7 ASP A 227 -25.54 45.33 REMARK 500 7 ARG A 229 55.73 23.72 REMARK 500 7 SER A 231 109.25 -46.96 REMARK 500 REMARK 500 THIS ENTRY HAS 125 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 229 ARG A 230 1 -133.02 REMARK 500 ASP A 227 GLY A 228 4 -147.38 REMARK 500 TYR A 226 ASP A 227 7 -144.11 REMARK 500 SER A 231 SER A 232 8 145.53 REMARK 500 GLY A 127 TYR A 128 9 141.53 REMARK 500 SER A 231 SER A 232 9 147.84 REMARK 500 LEU A 125 GLY A 126 10 141.56 REMARK 500 ARG A 230 SER A 231 13 148.25 REMARK 500 LEU A 125 GLY A 126 16 149.97 REMARK 500 ASN A 143 ASP A 144 16 -149.76 REMARK 500 THR A 192 THR A 193 17 -139.30 REMARK 500 GLY A 131 SER A 132 19 148.75 REMARK 500 SER A 231 SER A 232 20 -147.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 128 0.11 SIDE CHAIN REMARK 500 1 ARG A 148 0.10 SIDE CHAIN REMARK 500 1 TYR A 226 0.09 SIDE CHAIN REMARK 500 2 TYR A 128 0.09 SIDE CHAIN REMARK 500 2 TYR A 162 0.09 SIDE CHAIN REMARK 500 2 TYR A 169 0.07 SIDE CHAIN REMARK 500 2 ARG A 208 0.10 SIDE CHAIN REMARK 500 3 TYR A 150 0.10 SIDE CHAIN REMARK 500 3 ARG A 156 0.15 SIDE CHAIN REMARK 500 4 TYR A 128 0.09 SIDE CHAIN REMARK 500 4 ARG A 148 0.15 SIDE CHAIN REMARK 500 4 TYR A 218 0.08 SIDE CHAIN REMARK 500 4 ARG A 229 0.10 SIDE CHAIN REMARK 500 5 TYR A 128 0.08 SIDE CHAIN REMARK 500 5 TYR A 155 0.07 SIDE CHAIN REMARK 500 6 TYR A 128 0.07 SIDE CHAIN REMARK 500 6 ARG A 151 0.19 SIDE CHAIN REMARK 500 6 TYR A 157 0.12 SIDE CHAIN REMARK 500 6 TYR A 163 0.07 SIDE CHAIN REMARK 500 7 ARG A 208 0.12 SIDE CHAIN REMARK 500 7 TYR A 226 0.07 SIDE CHAIN REMARK 500 8 TYR A 157 0.08 SIDE CHAIN REMARK 500 9 TYR A 128 0.09 SIDE CHAIN REMARK 500 9 TYR A 157 0.07 SIDE CHAIN REMARK 500 9 ARG A 164 0.13 SIDE CHAIN REMARK 500 9 TYR A 169 0.08 SIDE CHAIN REMARK 500 11 ARG A 164 0.08 SIDE CHAIN REMARK 500 11 ARG A 230 0.08 SIDE CHAIN REMARK 500 13 TYR A 128 0.07 SIDE CHAIN REMARK 500 13 TYR A 157 0.07 SIDE CHAIN REMARK 500 13 TYR A 162 0.07 SIDE CHAIN REMARK 500 14 HIS A 187 0.09 SIDE CHAIN REMARK 500 15 TYR A 157 0.10 SIDE CHAIN REMARK 500 16 TYR A 150 0.07 SIDE CHAIN REMARK 500 16 TYR A 157 0.10 SIDE CHAIN REMARK 500 17 TYR A 128 0.10 SIDE CHAIN REMARK 500 17 ARG A 164 0.14 SIDE CHAIN REMARK 500 17 TYR A 169 0.07 SIDE CHAIN REMARK 500 17 HIS A 187 0.12 SIDE CHAIN REMARK 500 17 PHE A 198 0.10 SIDE CHAIN REMARK 500 18 ARG A 151 0.09 SIDE CHAIN REMARK 500 19 TYR A 128 0.10 SIDE CHAIN REMARK 500 19 ARG A 230 0.12 SIDE CHAIN REMARK 500 20 TYR A 128 0.11 SIDE CHAIN REMARK 500 20 ARG A 151 0.14 SIDE CHAIN REMARK 500 20 TYR A 163 0.07 SIDE CHAIN REMARK 500 20 TYR A 225 0.07 SIDE CHAIN REMARK 500 20 ARG A 229 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15845 RELATED DB: BMRB DBREF 2K5O A 121 232 UNP P04925 PRIO_MOUSE 120 231 SEQADV 2K5O GLY A 119 UNP P04925 EXPRESSION TAG SEQADV 2K5O SER A 120 UNP P04925 EXPRESSION TAG SEQADV 2K5O ASN A 170 UNP P04925 SER 169 ENGINEERED MUTATION SEQRES 1 A 114 GLY SER VAL VAL GLY GLY LEU GLY GLY TYR MET LEU GLY SEQRES 2 A 114 SER ALA MET SER ARG PRO MET ILE HIS PHE GLY ASN ASP SEQRES 3 A 114 TRP GLU ASP ARG TYR TYR ARG GLU ASN MET TYR ARG TYR SEQRES 4 A 114 PRO ASN GLN VAL TYR TYR ARG PRO VAL ASP GLN TYR ASN SEQRES 5 A 114 ASN GLN ASN ASN PHE VAL HIS ASP CYS VAL ASN ILE THR SEQRES 6 A 114 ILE LYS GLN HIS THR VAL THR THR THR THR LYS GLY GLU SEQRES 7 A 114 ASN PHE THR GLU THR ASP VAL LYS MET MET GLU ARG VAL SEQRES 8 A 114 VAL GLU GLN MET CYS VAL THR GLN TYR GLN LYS GLU SER SEQRES 9 A 114 GLN ALA TYR TYR ASP GLY ARG ARG SER SER HELIX 1 1 ASN A 143 MET A 154 1 12 HELIX 2 2 TYR A 155 TYR A 157 5 3 HELIX 3 3 PRO A 165 TYR A 169 5 5 HELIX 4 4 ASN A 171 THR A 190 1 20 HELIX 5 5 THR A 199 ASP A 227 1 29 SHEET 1 A 2 MET A 129 LEU A 130 0 SHEET 2 A 2 TYR A 162 TYR A 163 -1 O TYR A 163 N MET A 129 SSBOND 1 CYS A 179 CYS A 214 1555 1555 2.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1