HEADER MEMBRANE PROTEIN 30-JUN-08 2K5Q TITLE NMR SOLUTION STRUCTURE OF MEMBRANE ASSOCIATED PROTEIN FROM BACILLUS TITLE 2 CEREUS: NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET: BCR97A COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL MEMBRANE ASSOCIATED PROTEIN BCR97A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS ATCC 14579; SOURCE 3 ORGANISM_TAXID: 226900; SOURCE 4 GENE: BC_4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET 21-23C KEYWDS NESG, BCR97A, BACILLUS CEREUS, Q812L6 PROTEIN, GFT NMR, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.SWAPNA,D.WANG,L.OWENS,R.XIAO,J.LIU,M.C.BARAN,J.EVERETT,T.B.ACTON, AUTHOR 2 B.ROST,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (NESG) REVDAT 3 16-MAR-22 2K5Q 1 REMARK SEQADV REVDAT 2 24-FEB-09 2K5Q 1 VERSN REVDAT 1 26-AUG-08 2K5Q 0 JRNL AUTH G.SWAPNA,D.C.WANG,L.OWENS,R.XIAO,J.LIU,M.C.BARAN,J.EVERETT, JRNL AUTH 2 T.B.ACTON,B.ROST,G.T.MONTELIONE JRNL TITL NMR SOLUTION STRUCTURE OF MEMBRANE ASSOCIATED PROTEIN FROM JRNL TITL 2 BACILLUS CEREUS: NORTHEAST STRUCTURAL GENOMICS CONSORTIUM JRNL TITL 3 TARGET: BCR97A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOASSIGN 2.2.1, CNS 2.0.6 REMARK 3 AUTHORS : ZIMMERMAN, MOSELEY, KULIKOWSKI AND MONTELIONE REMARK 3 (AUTOASSIGN), BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS DETERMINED USING REMARK 3 TRIPLE RESONANCE NMR SPECTROSCOPY. AUTOMATED BACKBONE RESONANCE REMARK 3 ASSIGNMENTS WERE MADE USING AUTOASSIGN AND PATTERN PICKER REMARK 3 ALGORITHMS DEVELOPED FOR AUTOMATED ASSIGNMENTS OF GFT NMR DATA. REMARK 3 SIDE CHAIN ASSIGNMENTS WERE COMPLETED MANUALLY. AUTOMATED NOESY REMARK 3 ASSIGNMENTS WERE MADE USING AUTOSTRUCTURE AND STRUCTURE SOLUTION REMARK 3 WAS DETERMINED USING AUTOSTRUCTURE AND CYANA-2.1. 176 STRUCTURES REMARK 3 WERE CALCULATED AND 20 BEST CONFORMERS WERE THEN REFINED IN A REMARK 3 SHELL OF WATER USING CNS. INITIAL DIHEDRAL CONSTRIANTS WERE REMARK 3 OBTAINED FROM TALOS. THE STRUCTURE CALCULATIONS WERE DONE REMARK 3 INCLUDING THE C-TERMINAL TAG LEHHHHHH. COMPLETENESS OF REMARK 3 ASSIGNMENTS EXCLUDING THE 8-RESIDUE TAG ARE: BACKBONE ~98.5%, REMARK 3 SIDECHAIN ~ 95%, STEREOSPECIFIC METHYL ASSIGNMENTS 100%. THE REMARK 3 ASSIGNMENTS WERE VALIDATED USING THE AVS SOFTWARE. FINAL REMARK 3 STRUCTURE QUALITY FACTORS DETERMINED USING PSVS SOFTWARE: REMARK 3 ORDERED RESIDUES ARE DEFINED AS: 10-22,32-42,47-58,63-69,76-93. REMARK 3 (A) RMSD(ORDERED RESIDUES) ALL BACKBONE ATOMS 0.9A; ALL HEAVY REMARK 3 ATOMS 1.4A. (B) RAMACHANDRAN STATISTICS FOR ALL ORDERED RESIDUES: REMARK 3 MOST FAVOURED REGIONS:85.9%, ADDITIONALLY ALLOWED REGIONS 14.0%, REMARK 3 GENEROUSLY ALLOWED REGION:0.2%. (C) PROCHECK SCORES FOR ORDERED REMARK 3 RESIDUES (RAW/Z)PHI-PSI -0.73/-2.56, ALL:-0.49/-2.90 (D) REMARK 3 MOLPROBITY CLASH SCORE (RAW/Z): 17.11/-1.41. (E) RPFSCORES FOR REMARK 3 GOODNESS OF FIT TO NOESY DATA : RECALL:0.963 PRECISION: 0.805F- REMARK 3 MEASURE:0.877 DP-SCORE: 0.848 REMARK 4 REMARK 4 2K5Q COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000100709. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 293 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 5MM CACL2, 100MM NACL; 5MM REMARK 210 CACL2, 100MM NACL REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 1.25 MM [U-100% 13C; U-100% 15N] REMARK 210 BCR97A PROTEIN, 90% H2O/10% D2O; REMARK 210 0.77 MM [U-10% 13C; U-100% 15N] REMARK 210 BCR97A PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D C(CO) REMARK 210 NH; 3D HCCH-TOCSY; 3D HCCH-COSY; REMARK 210 3D 13C-EDITED_NOESY; 3D 1H-15N REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOSTRUCTURE 2.2.1, CYANA 2.1, REMARK 210 CNS 2.0.6 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 176 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: GFT (4,3)D DATA WAS ACQUIRED FOR BACKBONE ASSIGNMENTS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 4 -86.38 46.90 REMARK 500 1 MET A 6 -93.25 52.69 REMARK 500 1 ILE A 15 93.31 -65.09 REMARK 500 1 ASP A 27 -80.26 44.79 REMARK 500 1 LYS A 73 2.82 -151.20 REMARK 500 1 SER A 76 -60.45 -151.43 REMARK 500 1 LYS A 93 -60.79 -90.70 REMARK 500 1 HIS A 102 102.96 -57.77 REMARK 500 2 ASP A 2 85.54 -66.69 REMARK 500 2 LYS A 8 -125.26 -81.00 REMARK 500 2 ILE A 15 92.96 -69.72 REMARK 500 2 SER A 24 69.05 -67.91 REMARK 500 2 LYS A 25 -29.52 165.37 REMARK 500 2 GLN A 30 86.89 -63.54 REMARK 500 2 LYS A 31 -1.20 -142.05 REMARK 500 2 LEU A 59 -165.24 -105.15 REMARK 500 2 LYS A 73 -72.87 67.28 REMARK 500 2 VAL A 75 102.71 68.22 REMARK 500 2 LEU A 94 106.20 67.39 REMARK 500 3 MET A 6 -169.48 59.00 REMARK 500 3 LYS A 8 148.64 65.39 REMARK 500 3 LYS A 25 14.35 -170.01 REMARK 500 3 ASP A 27 94.90 61.43 REMARK 500 3 ARG A 60 109.68 -57.15 REMARK 500 3 LYS A 73 28.28 -150.77 REMARK 500 3 SER A 76 -35.94 -135.88 REMARK 500 3 LYS A 93 -60.53 -93.75 REMARK 500 3 LEU A 94 -42.42 175.44 REMARK 500 3 GLU A 99 -26.41 -149.76 REMARK 500 3 HIS A 102 102.94 -177.81 REMARK 500 4 LYS A 8 -141.38 -83.94 REMARK 500 4 HIS A 23 34.10 -72.06 REMARK 500 4 SER A 24 30.85 -87.90 REMARK 500 4 LYS A 44 -61.86 82.22 REMARK 500 4 ASP A 45 35.04 -162.63 REMARK 500 4 ARG A 60 178.16 -57.70 REMARK 500 4 LYS A 61 -72.03 -120.16 REMARK 500 4 TYR A 68 99.21 -69.92 REMARK 500 4 LYS A 73 178.62 67.35 REMARK 500 4 VAL A 75 125.56 66.40 REMARK 500 4 LEU A 94 123.10 71.97 REMARK 500 4 GLU A 99 -86.11 -105.70 REMARK 500 4 HIS A 100 87.71 50.61 REMARK 500 4 HIS A 102 85.54 62.64 REMARK 500 4 HIS A 104 94.90 -66.01 REMARK 500 5 THR A 16 -71.18 -84.52 REMARK 500 5 HIS A 23 38.34 -79.21 REMARK 500 5 LYS A 25 93.90 -164.84 REMARK 500 5 ASP A 27 85.83 -55.92 REMARK 500 5 ASN A 28 -47.45 178.46 REMARK 500 REMARK 500 THIS ENTRY HAS 217 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BCR97A RELATED DB: TARGETDB REMARK 900 RELATED ID: 15846 RELATED DB: BMRB DBREF 2K5Q A 2 97 UNP Q812L6 Q812L6_BACCR 22 117 SEQADV 2K5Q MET A 1 UNP Q812L6 EXPRESSION TAG SEQADV 2K5Q LEU A 98 UNP Q812L6 EXPRESSION TAG SEQADV 2K5Q GLU A 99 UNP Q812L6 EXPRESSION TAG SEQADV 2K5Q HIS A 100 UNP Q812L6 EXPRESSION TAG SEQADV 2K5Q HIS A 101 UNP Q812L6 EXPRESSION TAG SEQADV 2K5Q HIS A 102 UNP Q812L6 EXPRESSION TAG SEQADV 2K5Q HIS A 103 UNP Q812L6 EXPRESSION TAG SEQADV 2K5Q HIS A 104 UNP Q812L6 EXPRESSION TAG SEQADV 2K5Q HIS A 105 UNP Q812L6 EXPRESSION TAG SEQRES 1 A 105 MET ASP LEU ASN ARG MET GLY LYS ASP GLU TYR TYR VAL SEQRES 2 A 105 GLN ILE THR VAL ASP GLY LYS GLU VAL HIS SER LYS ALA SEQRES 3 A 105 ASP ASN GLY GLN LYS TYR LYS ASP TYR GLU TYR LYS LEU SEQRES 4 A 105 THR GLY PHE ASP LYS ASP GLY LYS GLU LYS GLU LEU GLU SEQRES 5 A 105 PHE THR ALA GLN LYS ASN LEU ARG LYS GLU ALA PHE LEU SEQRES 6 A 105 ARG VAL TYR HIS SER ASP LYS LYS GLY VAL SER ALA TRP SEQRES 7 A 105 GLU GLU VAL LYS LYS ASP GLU LEU PRO ALA LYS VAL LYS SEQRES 8 A 105 GLU LYS LEU GLY VAL LYS LEU GLU HIS HIS HIS HIS HIS SEQRES 9 A 105 HIS HELIX 1 1 HIS A 23 ASP A 27 5 5 HELIX 2 2 ALA A 88 LEU A 94 1 7 SHEET 1 A 3 ASP A 9 GLN A 14 0 SHEET 2 A 3 PHE A 64 HIS A 69 -1 O VAL A 67 N TYR A 11 SHEET 3 A 3 TRP A 78 VAL A 81 -1 O GLU A 79 N ARG A 66 SHEET 1 B 3 GLU A 21 VAL A 22 0 SHEET 2 B 3 ASP A 34 PHE A 42 -1 O ASP A 34 N VAL A 22 SHEET 3 B 3 GLU A 48 ALA A 55 -1 O LYS A 49 N GLY A 41 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1