HEADER TRANSCRIPTION REGULATOR 30-JUN-08 2K5S TITLE YMOA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MODULATING PROTEIN YMOA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HISTONE-LIKE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: YMOA, HHA, YPO3138, Y1046, YP_0793; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: DERIVATIVE OF PMAL-C2 KEYWDS PROTEIN, DNA-BINDING, TRANSCRIPTION REGULATOR EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR R.L.MCFEETERS,R.BYRD REVDAT 2 16-MAR-22 2K5S 1 REMARK SEQADV REVDAT 1 09-DEC-08 2K5S 0 SPRSDE 09-DEC-08 2K5S 2JVP JRNL AUTH R.L.MCFEETERS,A.S.ALTIERI,S.CHERRY,J.E.TROPEA,D.S.WAUGH, JRNL AUTH 2 R.BYRD JRNL TITL THE HIGH-PRECISION SOLUTION STRUCTURE OF YERSINIA MODULATING JRNL TITL 2 PROTEIN YMOA PROVIDES INSIGHT INTO INTERACTION WITH H-NS JRNL REF BIOCHEMISTRY V. 46 13975 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 18001134 JRNL DOI 10.1021/BI701210J REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY, X-PLOR NIH REMARK 3 AUTHORS : GODDARD (SPARKY), SCHWIETERS, KUSZEWSKI, TJANDRA REMARK 3 AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000100711. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] REMARK 210 YMOA, 50 MM SODIUM PHOSPHATE, REMARK 210 150 MM NACL, 5 MM DTT, 95 % H2O, REMARK 210 5 % D2O, 90% H2O/10% D2O; 1 MM REMARK 210 [U-99% 13C; U-99% 15N] YMOA, 50 REMARK 210 MM SODIUM PHOSPHATE, 150 MM NACL, REMARK 210 5 MM DTT, 95 % H2O, 5 % D2O, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HNCO; 3D HCACO; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HCCH-TOCSY; JMOD-NH; JMOD- REMARK 210 HACA; 3D H(CCO)NH; 3D C(CO)NH; REMARK 210 15N T1; 15N T2 REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, X-PLOR NIH, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 14 -13.93 85.53 REMARK 500 1 LEU A 30 -131.61 -115.87 REMARK 500 1 MET A 51 -99.09 -101.70 REMARK 500 1 ASN A 52 19.80 178.53 REMARK 500 1 LYS A 53 -139.36 -110.09 REMARK 500 1 TYR A 55 -148.29 -83.33 REMARK 500 1 ASP A 56 68.44 149.94 REMARK 500 1 LYS A 57 98.11 111.73 REMARK 500 1 LYS A 67 -49.70 -152.94 REMARK 500 1 HIS A 69 -176.70 -174.31 REMARK 500 2 THR A 14 -5.91 76.42 REMARK 500 2 TYR A 28 9.73 -64.16 REMARK 500 2 GLU A 29 2.76 -153.76 REMARK 500 2 LEU A 30 -139.56 -120.62 REMARK 500 2 MET A 51 -98.99 -101.06 REMARK 500 2 ASN A 52 31.93 174.94 REMARK 500 2 LYS A 53 -139.65 -120.25 REMARK 500 2 TYR A 55 -146.44 -77.21 REMARK 500 2 ASP A 56 67.17 149.50 REMARK 500 2 LYS A 57 111.66 123.38 REMARK 500 2 HIS A 65 -61.58 -105.27 REMARK 500 2 LYS A 67 -32.14 -156.70 REMARK 500 2 HIS A 69 -174.02 -173.24 REMARK 500 3 THR A 14 -11.07 86.52 REMARK 500 3 SER A 31 177.25 140.40 REMARK 500 3 LEU A 35 -19.18 -42.64 REMARK 500 3 MET A 51 -103.91 -104.68 REMARK 500 3 ASN A 52 29.07 -179.77 REMARK 500 3 LYS A 53 -140.56 -117.65 REMARK 500 3 TYR A 55 -147.54 -82.97 REMARK 500 3 ASP A 56 65.21 148.60 REMARK 500 3 LYS A 57 109.09 125.63 REMARK 500 3 LYS A 67 -35.04 -156.36 REMARK 500 3 HIS A 69 -175.33 -172.72 REMARK 500 4 THR A 14 -8.14 81.73 REMARK 500 4 LEU A 30 -79.75 -118.51 REMARK 500 4 SER A 31 153.94 105.97 REMARK 500 4 LEU A 35 -18.39 -41.86 REMARK 500 4 MET A 51 -101.36 -102.92 REMARK 500 4 ASN A 52 29.39 177.95 REMARK 500 4 LYS A 53 -139.97 -118.17 REMARK 500 4 TYR A 55 -146.36 -85.04 REMARK 500 4 ASP A 56 63.00 148.32 REMARK 500 4 LYS A 57 108.58 129.19 REMARK 500 4 LYS A 67 -48.83 -151.89 REMARK 500 4 HIS A 69 -173.03 -174.51 REMARK 500 5 THR A 14 -13.34 72.17 REMARK 500 5 SER A 31 171.19 110.94 REMARK 500 5 MET A 51 -98.44 -101.19 REMARK 500 5 ASN A 52 18.31 176.93 REMARK 500 REMARK 500 THIS ENTRY HAS 114 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2K5S A 2 67 UNP P0A3X0 YMOA_YERPE 2 67 SEQADV 2K5S GLY A 1 UNP P0A3X0 EXPRESSION TAG SEQADV 2K5S HIS A 68 UNP P0A3X0 EXPRESSION TAG SEQADV 2K5S HIS A 69 UNP P0A3X0 EXPRESSION TAG SEQADV 2K5S HIS A 70 UNP P0A3X0 EXPRESSION TAG SEQADV 2K5S HIS A 71 UNP P0A3X0 EXPRESSION TAG SEQADV 2K5S HIS A 72 UNP P0A3X0 EXPRESSION TAG SEQADV 2K5S HIS A 73 UNP P0A3X0 EXPRESSION TAG SEQRES 1 A 73 GLY THR LYS THR ASP TYR LEU MET ARG LEU ARG LYS CYS SEQRES 2 A 73 THR THR ILE ASP THR LEU GLU ARG VAL ILE GLU LYS ASN SEQRES 3 A 73 LYS TYR GLU LEU SER ASP ASP GLU LEU GLU LEU PHE TYR SEQRES 4 A 73 SER ALA ALA ASP HIS ARG LEU ALA GLU LEU THR MET ASN SEQRES 5 A 73 LYS LEU TYR ASP LYS ILE PRO PRO THR VAL TRP GLN HIS SEQRES 6 A 73 VAL LYS HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 2 LYS A 12 1 11 HELIX 2 2 THR A 15 LEU A 30 1 16 HELIX 3 3 SER A 31 ASP A 43 1 13 HELIX 4 4 ASP A 43 MET A 51 1 9 HELIX 5 5 PRO A 60 VAL A 66 1 7 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1