HEADER TRANSFERASE 30-JUN-08 2K5T TITLE SOLUTION NMR STRUCTURE OF PUTATIVE N-ACETYL TRANSFERASE YHHK FROM E. TITLE 2 COLI BOUND TO COENZYME A: NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET ET106 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YHHK; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: YHHK, B3459, JW3424; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS N-ACETYL TRANSFERASE, COA, BOUND LIGAND, COENZYME A, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, NESG, UNKNOWN FUNCTION, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.R.CORT,A.YEE,G.T.MONTELIONE,C.H.ARROWSMITH,M.A.KENNEDY,NORTHEAST AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 20-OCT-21 2K5T 1 REMARK SEQADV REVDAT 2 24-FEB-09 2K5T 1 VERSN REVDAT 1 22-JUL-08 2K5T 0 JRNL AUTH J.R.CORT,A.YEE,C.H.ARROWSMITH,M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF PUTATIVE N-ACETYL TRANSFERASE YHHK JRNL TITL 2 FROM E. COLI BOUND TO COENZYME A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX, AUTOSTRUCTURE, CNS, X-PLOR NIH REMARK 3 AUTHORS : ACCELRYS SOFTWARE INC. (FELIX), HUANG, TEJERO, REMARK 3 POWERS AND MONTELIONE (AUTOSTRUCTURE), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K5T COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000100712. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-100% 13C; U-100% 15N] REMARK 210 YHHK, 5 MM COENZYME A, 7 % D2O, REMARK 210 300 MM SODIUM CHLORIDE, 25 MM REMARK 210 TRIS, 5 MM DTT, 93% H2O/7% D2O; REMARK 210 0.6 MM [U-100% 13C; U-100% 15N] REMARK 210 YHHK, 5 MM COENZYME A, 100 % D2O, REMARK 210 300 MM SODIUM CHLORIDE, 25 MM REMARK 210 TRIS, 5 MM DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HCCH-TOCSY; 3D HCCH- REMARK 210 COSY; 3D HBHA(CO)NH; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 4D 13C REMARK 210 HMQC-NOESY-HMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX, SPARKY, AUTOSTRUCTURE, REMARK 210 CNS, X-PLOR NIH REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : FEWEST RESTRAINTS VIOLATIONS AND REMARK 210 ENERGIES, FAVORABLE BACKBONE REMARK 210 GEOMETRY, MINIMAL CLASHES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 28 104.63 -53.12 REMARK 500 1 LEU A 31 78.70 58.13 REMARK 500 1 ASN A 45 65.32 60.53 REMARK 500 1 GLU A 46 -29.85 72.58 REMARK 500 1 SER A 57 99.06 -67.31 REMARK 500 1 ASP A 64 -75.32 -99.25 REMARK 500 1 ARG A 74 90.64 173.85 REMARK 500 1 ARG A 75 17.57 -156.46 REMARK 500 1 VAL A 92 99.14 -61.86 REMARK 500 1 ALA A 100 14.38 59.09 REMARK 500 2 PRO A 28 97.62 -64.51 REMARK 500 2 LEU A 31 105.63 74.12 REMARK 500 2 ASP A 34 -30.11 74.40 REMARK 500 2 ASN A 36 -40.02 83.22 REMARK 500 2 SER A 57 50.15 -98.59 REMARK 500 2 ARG A 73 38.84 -78.25 REMARK 500 2 ARG A 74 19.95 174.37 REMARK 500 3 SER A 29 -78.31 -164.68 REMARK 500 3 SER A 30 -75.21 -74.04 REMARK 500 3 ASN A 36 -34.99 75.85 REMARK 500 3 ASN A 45 74.26 60.94 REMARK 500 3 GLU A 46 -43.55 71.42 REMARK 500 3 ASP A 64 -75.06 -102.85 REMARK 500 3 ARG A 74 -81.07 -157.67 REMARK 500 3 ARG A 75 95.71 164.86 REMARK 500 3 ASN A 89 79.79 -119.59 REMARK 500 4 ASN A 45 -76.41 69.59 REMARK 500 4 GLU A 46 71.93 -151.31 REMARK 500 4 ASP A 64 -79.85 -95.35 REMARK 500 4 GLN A 121 50.72 -91.05 REMARK 500 5 PRO A 28 84.26 -63.30 REMARK 500 5 SER A 65 127.87 69.93 REMARK 500 6 PRO A 28 109.04 -54.77 REMARK 500 6 LEU A 31 90.30 -59.10 REMARK 500 6 ASN A 45 -69.93 69.02 REMARK 500 6 GLU A 46 -66.74 -94.20 REMARK 500 6 ARG A 47 -150.79 -147.61 REMARK 500 6 SER A 65 100.83 64.98 REMARK 500 6 ARG A 75 88.37 69.16 REMARK 500 6 ASN A 89 76.96 -118.14 REMARK 500 6 ASP A 99 73.61 -108.71 REMARK 500 6 ASP A 104 41.19 -86.74 REMARK 500 7 PRO A 28 100.20 -55.58 REMARK 500 7 SER A 29 -53.29 -131.38 REMARK 500 7 ASN A 36 -68.19 -96.18 REMARK 500 7 ASN A 45 -46.98 72.25 REMARK 500 7 GLU A 46 -67.83 -128.21 REMARK 500 7 ARG A 74 91.38 61.58 REMARK 500 7 ARG A 75 -42.81 -164.42 REMARK 500 7 ASP A 104 44.45 -85.75 REMARK 500 REMARK 500 THIS ENTRY HAS 140 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ET106 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15848 RELATED DB: BMRB DBREF 2K5T A 1 127 UNP P37613 YHHK_ECOLI 1 127 SEQADV 2K5T THR A 119 UNP P37613 ALA 119 ENGINEERED MUTATION SEQADV 2K5T GLY A 128 UNP P37613 EXPRESSION TAG SEQRES 1 A 128 MET LYS LEU THR ILE ILE ARG LEU GLU LYS PHE SER ASP SEQRES 2 A 128 GLN ASP ARG ILE ASP LEU GLN LYS ILE TRP PRO GLU TYR SEQRES 3 A 128 SER PRO SER SER LEU GLN VAL ASP ASP ASN HIS ARG ILE SEQRES 4 A 128 TYR ALA ALA ARG PHE ASN GLU ARG LEU LEU ALA ALA VAL SEQRES 5 A 128 ARG VAL THR LEU SER GLY THR GLU GLY ALA LEU ASP SER SEQRES 6 A 128 LEU ARG VAL ARG GLU VAL THR ARG ARG ARG GLY VAL GLY SEQRES 7 A 128 GLN TYR LEU LEU GLU GLU VAL LEU ARG ASN ASN PRO GLY SEQRES 8 A 128 VAL SER CYS TRP TRP MET ALA ASP ALA GLY VAL GLU ASP SEQRES 9 A 128 ARG GLY VAL MET THR ALA PHE MET GLN ALA LEU GLY PHE SEQRES 10 A 128 THR THR GLN GLN GLY GLY TRP GLU LYS CYS GLY HET COA A 999 80 HETNAM COA COENZYME A FORMUL 2 COA C21 H36 N7 O16 P3 S HELIX 1 1 SER A 12 TRP A 23 1 12 HELIX 2 2 GLY A 76 ASN A 89 1 14 HELIX 3 3 ASP A 104 GLY A 116 1 13 SHEET 1 A 7 THR A 4 ARG A 7 0 SHEET 2 A 7 HIS A 37 PHE A 44 -1 O ALA A 41 N ILE A 6 SHEET 3 A 7 ARG A 47 SER A 57 -1 O LEU A 49 N ALA A 42 SHEET 4 A 7 GLU A 60 VAL A 68 -1 O ALA A 62 N THR A 55 SHEET 5 A 7 CYS A 94 MET A 97 1 O TRP A 96 N LEU A 63 SHEET 6 A 7 TRP A 124 CYS A 127 -1 O TRP A 124 N MET A 97 SHEET 7 A 7 THR A 118 THR A 119 -1 N THR A 118 O GLU A 125 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1