HEADER STRUCTURAL PROTEIN 11-JUL-08 2K6M TITLE SOLUTION STRUCTURE OF HUMAN SUPERVILLIN HEADPIECE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPERVILLIN; COMPND 3 CHAIN: S; COMPND 4 FRAGMENT: UNP RESIDUES 2149-2214, HP; COMPND 5 SYNONYM: ARCHVILLIN, P205/P250; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SVIL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PSVHP(PET24A) KEYWDS SUPERVILLIN, SVHP, HP, HEADPIECE, VILLIN, ARCHVILLIN, ACTIN CAPPING, KEYWDS 2 ACTIN-BINDING, ALTERNATIVE SPLICING, CALCIUM, CYTOPLASM, KEYWDS 3 CYTOSKELETON, MEMBRANE, PHOSPHOPROTEIN, POLYMORPHISM, STRUCTURAL KEYWDS 4 PROTEIN EXPDTA SOLUTION NMR NUMMDL 22 AUTHOR J.W.BROWN,V.DIDEM,C.MCKNIGHT REVDAT 3 16-MAR-22 2K6M 1 REMARK SEQADV REVDAT 2 27-OCT-09 2K6M 1 JRNL REVDAT 1 14-JUL-09 2K6M 0 JRNL AUTH J.W.BROWN,D.VARDAR-ULU,C.J.MCKNIGHT JRNL TITL HOW TO ARM A SUPERVILLIN: DESIGNING F-ACTIN BINDING ACTIVITY JRNL TITL 2 INTO SUPERVILLIN HEADPIECE. JRNL REF J.MOL.BIOL. V. 393 608 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19683541 JRNL DOI 10.1016/J.JMB.2009.08.018 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K6M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000100741. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3-2.5 MM [U-13C SUPERVILLIN REMARK 210 HEADPIECE, 4 MM DTT, 100 MM REMARK 210 SODIUM CHLORIDE, 500 UM TMSP, 20 REMARK 210 MM SODIUM PHOSPHATE, 95% H2O/5% REMARK 210 D2O; 1.3-2.5 MM [U-15N] REMARK 210 SUPERVILLIN HEADPIECE, 20 MM REMARK 210 SODIUM PHOSPHATE, 500 UM TMSP, 4 REMARK 210 MM DTT, 100 MM SODIUM CHLORIDE, REMARK 210 95% H2O/5% D2O; 1.3-2.5 MM [U- REMARK 210 10% 13C] SUPERVILLIN HEADPIECE, REMARK 210 4 MM DTT, 500 UM TMSP, 100 MM REMARK 210 SODIUM CHLORIDE, 20 MM SODIUM REMARK 210 PHOSPHATE, 95% H2O/5% D2O; 1.3- REMARK 210 2.5 MM SUPERVILLIN HEADPIECE, 4 REMARK 210 MM DTT, 500 UM TMSP, 100 MM REMARK 210 SODIUM CHLORIDE, 20 MM SODIUM REMARK 210 PHOSPHATE, 95% H2O/5% D2O; 1.3- REMARK 210 2.5 MM [U-13C] SUPERVILLIN REMARK 210 HEADPIECE, 4 MM DTT, 100 MM REMARK 210 SODIUM CHLORIDE, 20 MM SODIUM REMARK 210 PHOSPHATE, 500 UM TMSP, 95% H2O/ REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H COSY; REMARK 210 3D HNCA; 3D HNCO; 3D HN(C 3D REMARK 210 HCCH-TOCSY; 3D HCCH-COSY; 3D REMARK 210 HNHA; 3D HNHB; 3D HN(CA)CO; 2D REMARK 210 1H-1H NOESY; 3D 1H-15N NOESY 3D REMARK 210 1H-13C NOESY; 3D HMQC-J REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1, NMRPIPE, MOLMOL 2K.2 REMARK 210 2K.2, XWINNMR 3.1, TALOS, REMARK 210 PREDITOR, NMRVIEW 7.0.16 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 22 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: DISTANCE RESTRAINTS WERE DETERMINED FROM A NOESY BUILDUP REMARK 210 SERIES. MIXING TIMES OF 50, 75, 100, 125 AND 150 US. EXTRA REMARK 210 RESTRAINTS FROM 13C AND 15N-EDITTED NOESY BINED AS WEAK REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR S 43 H PHE S 47 1.52 REMARK 500 O TRP S 64 H ASN S 68 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA S 26 49.22 96.77 REMARK 500 1 PRO S 28 80.90 -30.68 REMARK 500 1 PRO S 30 -159.53 -80.24 REMARK 500 1 ASP S 44 -34.11 -34.67 REMARK 500 1 LEU S 75 -82.05 -62.85 REMARK 500 2 PRO S 20 98.16 -49.89 REMARK 500 2 LEU S 21 -37.48 -35.99 REMARK 500 2 ALA S 26 40.14 165.87 REMARK 500 2 PRO S 28 67.26 -34.15 REMARK 500 2 PRO S 30 -164.78 -60.67 REMARK 500 2 THR S 43 -169.73 -72.22 REMARK 500 2 MET S 53 -159.15 -123.67 REMARK 500 2 LEU S 75 -83.36 -57.58 REMARK 500 3 ALA S 26 43.05 176.83 REMARK 500 3 PRO S 28 82.78 -48.88 REMARK 500 3 PRO S 30 -162.05 -65.33 REMARK 500 3 LYS S 37 84.79 -158.39 REMARK 500 3 THR S 43 -174.03 -59.88 REMARK 500 3 MET S 53 -167.01 -128.29 REMARK 500 3 LEU S 75 -84.25 -65.45 REMARK 500 4 ALA S 26 37.72 173.25 REMARK 500 4 PRO S 28 75.58 -49.77 REMARK 500 4 PRO S 30 -162.94 -66.28 REMARK 500 4 LYS S 37 96.07 -160.48 REMARK 500 4 GLU S 39 -29.12 -37.12 REMARK 500 4 THR S 43 -170.18 -59.76 REMARK 500 4 MET S 53 -162.67 -122.25 REMARK 500 4 PRO S 62 158.18 -49.48 REMARK 500 4 LEU S 75 -85.53 -51.61 REMARK 500 5 PRO S 20 105.81 -51.21 REMARK 500 5 ALA S 26 19.93 176.42 REMARK 500 5 PRO S 28 76.20 -50.86 REMARK 500 5 PRO S 30 -161.12 -63.44 REMARK 500 5 GLU S 39 -19.90 -49.73 REMARK 500 5 THR S 43 -176.96 -67.10 REMARK 500 5 MET S 53 -159.05 -124.56 REMARK 500 5 LEU S 75 -79.43 -108.40 REMARK 500 6 PRO S 20 100.72 -49.19 REMARK 500 6 LEU S 21 -33.93 -39.02 REMARK 500 6 ALA S 26 48.81 163.38 REMARK 500 6 PRO S 28 71.30 -43.56 REMARK 500 6 PRO S 30 -164.25 -54.97 REMARK 500 6 LYS S 37 93.49 -172.55 REMARK 500 6 GLU S 39 -27.85 -39.22 REMARK 500 6 THR S 43 -166.99 -60.04 REMARK 500 6 ALA S 50 -61.42 -100.32 REMARK 500 6 MET S 53 -160.35 -120.65 REMARK 500 6 LEU S 75 -86.75 -58.27 REMARK 500 7 PRO S 20 107.24 -53.47 REMARK 500 7 ALA S 26 40.76 172.01 REMARK 500 REMARK 500 THIS ENTRY HAS 190 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2K6N RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF HUMAN SUPERVILLIN HEADPIECE, MINIMIZED AVERAGE REMARK 900 RELATED ID: 1YU5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HEADPIECE DOMAIN OF CHICKEN VILLIN REMARK 900 RELATED ID: 1QZP RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE HUMAN DEMATIN HEADPIECE DOMAIN REMARK 900 RELATED ID: 1ZV6 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE HUMAN DEMATIN HEADPIECE S74E MUTANT REMARK 900 RELATED ID: 1QQV RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE HEADPIECE DOMAIN OF CHICKEN VILLIN REMARK 900 RELATED ID: 1YU7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE W64A MUTANT OF VILLIN HEADPIECE REMARK 900 RELATED ID: 1UNC RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE HUMAN VILLIN C-TERMINAL HEADPIECE REMARK 900 SUBDOMAIN REMARK 900 RELATED ID: 1UND RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE HUMAN ADVILLIN C-TERMINAL SUBDOMAIN REMARK 900 RELATED ID: 1YU8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE R37A MUTANT OF VILLIN HEADPIECE REMARK 900 RELATED ID: 1VII RELATED DB: PDB REMARK 900 THERMOSTABLE SUBDOMAIN FROM CHICKEN VILLIN HEADPIECE, NMR, REMARK 900 MINIMIZED AVERAGE STRUCTURE REMARK 900 RELATED ID: 2PPZ RELATED DB: PDB REMARK 900 NMR SOLUTION STRUCTURE OF THE VILLIN HEADPIECE MUTANT G34L REMARK 900 RELATED ID: 1UJS RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE VILLIN HEADPIECE DOMAIN OF HUMAN ACTIN- REMARK 900 BINDING LIM PROTEIN HOMOLOG REMARK 900 RELATED ID: 1YRF RELATED DB: PDB REMARK 900 CHICKEN VILLIN SUBDOMAIN HP-35, N68H, PH 6.7 REMARK 900 RELATED ID: 1YRI RELATED DB: PDB REMARK 900 CHICKEN VILLIN SUBDOMAIN HP-35, N68H, PH 6.4 REMARK 900 RELATED ID: 2JM0 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF CHICKEN VILLIN HEADPIECE SUBDOMAIN CONTAINING REMARK 900 A FLUORINATED SIDECHAIN IN THE CORE REMARK 900 RELATED ID: 1WY3 RELATED DB: PDB REMARK 900 CHICKEN VILLIN SUBDOMAIN HP-35, K65(NLE), N68H, PH 7.0 REMARK 900 RELATED ID: 1WY4 RELATED DB: PDB REMARK 900 CHICKEN VILLIN SUBDOMAIN HP-35, K65(NLE), N68H, PH 5.1 DBREF 2K6M S 11 76 UNP O95425 SVIL_HUMAN 2149 2214 SEQADV 2K6M MET S 10 UNP O95425 EXPRESSION TAG SEQRES 1 S 67 MET LEU ALA LYS LEU CYS LYS THR ILE TYR PRO LEU ALA SEQRES 2 S 67 ASP LEU LEU ALA ARG PRO LEU PRO GLU GLY VAL ASP PRO SEQRES 3 S 67 LEU LYS LEU GLU ILE TYR LEU THR ASP GLU ASP PHE GLU SEQRES 4 S 67 PHE ALA LEU ASP MET THR ARG ASP GLU TYR ASN ALA LEU SEQRES 5 S 67 PRO ALA TRP LYS GLN VAL ASN LEU LYS LYS ALA LYS GLY SEQRES 6 S 67 LEU PHE HELIX 1 1 PRO S 20 LEU S 25 1 6 HELIX 2 2 LEU S 38 LEU S 42 5 5 HELIX 3 3 THR S 43 LEU S 51 1 9 HELIX 4 4 THR S 54 ASN S 59 1 6 HELIX 5 5 PRO S 62 GLY S 74 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1