HEADER DNA BINDING PROTEIN 01-AUG-08 2K75 TITLE SOLUTION NMR STRUCTURE OF THE OB DOMAIN OF TA0387 FROM THERMOPLASMA TITLE 2 ACIDOPHILUM. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TAR80B. COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN TA0387; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 105-202; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM; SOURCE 3 ORGANISM_TAXID: 2303; SOURCE 4 GENE: TA0387; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PMGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21-23C KEYWDS CLOSED BETA BARREL, OB FOLD, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 NESG, UNKNOWN FUNCTION, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,K.DING,D.LEE,M.JIANG,C.CICCOSANTI,R.XIAO,R.NAIR, AUTHOR 2 J.K.EVERETT,G.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE,M.A.KENNEDY, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 22-MAY-24 2K75 1 REMARK REVDAT 3 16-MAR-22 2K75 1 REMARK REVDAT 2 24-FEB-09 2K75 1 VERSN REVDAT 1 19-AUG-08 2K75 0 JRNL AUTH T.A.RAMELOT,K.DING,D.LEE,M.JIANG,C.CICCOSANTI,R.XIAO,R.NAIR, JRNL AUTH 2 J.K.EVERETT,G.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE, JRNL AUTH 3 M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF THE OB DOMAIN OF TA0387 FROM JRNL TITL 2 THERMOPLASMA ACIDOPHILUM. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOASSIGN 2.3.0, X-PLOR NIH 2.20.0 REMARK 3 AUTHORS : ZIMMERMAN, MOSELEY, KULIKOWSKI AND MONTELIONE REMARK 3 (AUTOASSIGN), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR-NIH REMARK 4 REMARK 4 2K75 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000100760. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM AMMONIUM ACETATE, 100 MM REMARK 210 SODIUM CHLORIDE, 10 MM DTT, 5 MM REMARK 210 CALCIUM CHLORIDE, 0.02 % SODIUM REMARK 210 AZIDE, 1.0 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN, 95% H2O/5% D2O; REMARK 210 20 MM AMMONIUM ACETATE, 100 MM REMARK 210 SODIUM CHLORIDE, 10 MM DTT, 5 MM REMARK 210 CALCIUM CHLORIDE, 0.02 % SODIUM REMARK 210 AZIDE, 1.3 MM [U-5% 13C; U-100% REMARK 210 15N] PROTEIN, 95% H2O/5% D2O; 20 REMARK 210 MM AMMONIUM ACETATE, 100 MM REMARK 210 SODIUM CHLORIDE, 10 MM DTT, 5 MM REMARK 210 CALCIUM CHLORIDE, 0.02 % SODIUM REMARK 210 AZIDE, 1.0 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D HCCH-COSY; 3D REMARK 210 H(CCO)NH; 3D C(CO)NH; 4D CC NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE LINUX9, VNMR 6.1C, REMARK 210 TOPSPIN 2.1, AUTOSTRUCTURE 2.2.1, REMARK 210 X-PLOR NIH 2.20.0, SPARKY 3.113, REMARK 210 PSVS 1.3 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 46 -148.77 -145.08 REMARK 500 1 THR A 48 -91.11 -105.67 REMARK 500 1 ALA A 49 -145.14 -133.51 REMARK 500 1 PRO A 98 -78.72 -75.12 REMARK 500 1 LEU A 99 160.03 61.20 REMARK 500 1 GLU A 100 168.11 51.68 REMARK 500 2 ASP A 46 95.32 -168.09 REMARK 500 2 ASP A 47 -77.61 52.40 REMARK 500 2 THR A 48 -80.90 -38.62 REMARK 500 2 ALA A 49 -143.67 -158.21 REMARK 500 2 ASN A 94 -69.15 -132.46 REMARK 500 2 LEU A 99 93.99 55.98 REMARK 500 2 GLU A 100 84.36 -157.25 REMARK 500 2 HIS A 101 129.03 58.60 REMARK 500 2 HIS A 104 6.02 54.11 REMARK 500 3 ASP A 46 95.55 -167.36 REMARK 500 3 ASP A 47 -79.64 48.37 REMARK 500 3 THR A 48 -77.31 -36.29 REMARK 500 3 ALA A 49 -153.99 -161.12 REMARK 500 3 ASN A 94 101.66 48.94 REMARK 500 3 LEU A 99 108.24 56.69 REMARK 500 3 HIS A 105 -112.56 55.84 REMARK 500 4 ASP A 2 158.85 146.42 REMARK 500 4 ASP A 46 -153.16 -141.78 REMARK 500 4 THR A 48 -85.80 -108.75 REMARK 500 4 ALA A 49 -148.86 -135.00 REMARK 500 4 SER A 63 78.85 61.56 REMARK 500 4 ASN A 96 51.39 -101.24 REMARK 500 4 GLU A 100 -123.76 58.53 REMARK 500 4 HIS A 101 -93.88 44.48 REMARK 500 5 SER A 32 -149.50 -144.97 REMARK 500 5 ASP A 33 84.28 -50.95 REMARK 500 5 THR A 48 -62.11 -107.06 REMARK 500 5 ALA A 49 -151.46 -160.71 REMARK 500 5 SER A 63 78.85 45.82 REMARK 500 5 ASN A 94 -118.65 49.28 REMARK 500 5 VAL A 95 -0.56 55.52 REMARK 500 5 LEU A 99 -84.59 -46.33 REMARK 500 5 GLU A 100 93.97 42.20 REMARK 500 5 HIS A 104 79.31 -153.43 REMARK 500 5 HIS A 105 37.57 -174.63 REMARK 500 6 THR A 13 79.57 -113.77 REMARK 500 6 SER A 32 -151.18 -82.83 REMARK 500 6 ASP A 33 77.34 -55.69 REMARK 500 6 ASP A 46 -157.18 -147.86 REMARK 500 6 THR A 48 -68.64 -100.91 REMARK 500 6 ALA A 49 -148.55 -159.78 REMARK 500 6 SER A 63 36.79 39.02 REMARK 500 6 ILE A 97 71.64 56.52 REMARK 500 7 ILE A 25 128.37 59.11 REMARK 500 REMARK 500 THIS ENTRY HAS 170 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TAR80B RELATED DB: TARGETDB DBREF 2K75 A 1 98 UNP Q9HL44 Q9HL44_THEAC 105 202 SEQADV 2K75 LEU A 99 UNP Q9HL44 EXPRESSION TAG SEQADV 2K75 GLU A 100 UNP Q9HL44 EXPRESSION TAG SEQADV 2K75 HIS A 101 UNP Q9HL44 EXPRESSION TAG SEQADV 2K75 HIS A 102 UNP Q9HL44 EXPRESSION TAG SEQADV 2K75 HIS A 103 UNP Q9HL44 EXPRESSION TAG SEQADV 2K75 HIS A 104 UNP Q9HL44 EXPRESSION TAG SEQADV 2K75 HIS A 105 UNP Q9HL44 EXPRESSION TAG SEQADV 2K75 HIS A 106 UNP Q9HL44 EXPRESSION TAG SEQRES 1 A 106 SER ASP LEU VAL LYS ILE ARG ASP VAL SER LEU SER THR SEQRES 2 A 106 PRO TYR VAL SER VAL ILE GLY LYS ILE THR GLY ILE HIS SEQRES 3 A 106 LYS LYS GLU TYR GLU SER ASP GLY THR THR LYS SER VAL SEQRES 4 A 106 TYR GLN GLY TYR ILE GLU ASP ASP THR ALA ARG ILE ARG SEQRES 5 A 106 ILE SER SER PHE GLY LYS GLN LEU GLN ASP SER ASP VAL SEQRES 6 A 106 VAL ARG ILE ASP ASN ALA ARG VAL ALA GLN PHE ASN GLY SEQRES 7 A 106 TYR LEU SER LEU SER VAL GLY ASP SER SER ARG ILE GLU SEQRES 8 A 106 SER VAL ASN VAL ASN ILE PRO LEU GLU HIS HIS HIS HIS SEQRES 9 A 106 HIS HIS SHEET 1 A 7 ARG A 89 SER A 92 0 SHEET 2 A 7 ASP A 64 PHE A 76 -1 N ARG A 67 O GLU A 91 SHEET 3 A 7 TYR A 79 VAL A 84 -1 O TYR A 79 N PHE A 76 SHEET 4 A 7 ARG A 50 PHE A 56 1 N SER A 54 O VAL A 84 SHEET 5 A 7 THR A 35 GLU A 45 -1 N TYR A 40 O SER A 55 SHEET 6 A 7 TYR A 15 SER A 32 -1 N THR A 23 O TYR A 43 SHEET 7 A 7 ASP A 64 PHE A 76 -1 O ALA A 71 N VAL A 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1