HEADER TRANSFERASE 08-AUG-08 2K7A TITLE ENSEMBLE STRUCTURES OF THE BINARY COMPLEX BETWEEN THE SH3 AND SH2 TITLE 2 DOMAIN OF INTERLEUKIN-2 TYROSINE KINASE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SH3 DOMAIN OF TYROSINE-PROTEIN KINASE ITK/TSK; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: T-CELL-SPECIFIC KINASE, IL-2-INDUCIBLE T-CELL KINASE, KINASE COMPND 5 EMT, KINASE TLK; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SH2 DOMAIN OF TYROSINE-PROTEIN KINASE ITK/TSK; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: T-CELL-SPECIFIC KINASE, IL-2-INDUCIBLE T-CELL KINASE, KINASE COMPND 12 EMT, KINASE TLK; COMPND 13 EC: 2.7.10.2; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ITK, EMT, TLK, TSK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX2T; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: ITK, EMT, TLK, TSK; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PGEX2T KEYWDS SH3, SH2, NOVEL, CIS, ATP-BINDING, CELL MEMBRANE, KINASE, MEMBRANE, KEYWDS 2 METAL-BINDING, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, SH2 DOMAIN, SH3 KEYWDS 3 DOMAIN, TRANSFERASE, TYROSINE-PROTEIN KINASE, ZINC, ZINC-FINGER EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.H.ANDREOTTI,A.J.SEVERIN,D.B.FULTON REVDAT 3 01-MAY-24 2K7A 1 REMARK REVDAT 2 01-JAN-20 2K7A 1 JRNL REMARK SEQADV REVDAT 1 10-MAR-09 2K7A 0 JRNL AUTH A.SEVERIN,R.E.JOSEPH,S.BOYKEN,D.B.FULTON,A.H.ANDREOTTI JRNL TITL PROLINE ISOMERIZATION PREORGANIZES THE ITK SH2 DOMAIN FOR JRNL TITL 2 BINDING TO THE ITK SH3 DOMAIN. JRNL REF J.MOL.BIOL. V. 387 726 2009 JRNL REFN ESSN 1089-8638 JRNL PMID 19361414 JRNL DOI 10.1016/J.JMB.2009.02.012 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.19 REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINE.PY SCRIPT FROM XPLOR-NIH 2.19 REMARK 4 REMARK 4 2K7A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000100765. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 75 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3.4 MM [U-100% 13C; U-100% 15N] REMARK 210 ITK SH3 DOMAIN, 1.5 MM ITK SH2 REMARK 210 DOMAIN, 95% H2O/5% D2O; 3.4 MM REMARK 210 [U-100% 13C; U-100% 15N] ITK SH2 REMARK 210 DOMAIN, 1.5 MM ITK SH3 DOMAIN, REMARK 210 95% H2O/5% D2O; 1.5 MM [U-100% REMARK 210 13C; U-100% 15N] ITK SH2 DOMAIN, REMARK 210 3.4 MM ITK SH3 DOMAIN, 95% H2O/5% REMARK 210 D2O; 1.5 MM [U-100% 13C; U-100% REMARK 210 15N] ITK SH3 DOMAIN, 3.4 MM ITK REMARK 210 SH2 DOMAIN, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 15N TOCSY; 3D 1H-13C NOESY; 2D REMARK 210 1H-15N IPAP; 3D HNCA COSY; (HB) REMARK 210 CB(CGCDCE)HE; (HB)CB(CGCD)HD; 3D REMARK 210 HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVII REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.8.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY B 230 REMARK 465 SER B 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG3 MET B 263 H VAL B 264 1.31 REMARK 500 O LEU A 175 H LYS A 229 1.47 REMARK 500 O LEU B 317 H TYR B 321 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 180 -152.46 -94.86 REMARK 500 1 ASP A 181 60.25 -116.08 REMARK 500 1 CYS A 194 93.09 -18.35 REMARK 500 1 ASP A 195 -20.25 129.12 REMARK 500 1 GLU A 196 -162.64 -56.01 REMARK 500 1 GLU A 197 153.29 176.81 REMARK 500 1 TYR A 198 -155.49 -152.69 REMARK 500 1 HIS A 207 -85.07 -94.29 REMARK 500 1 ARG A 210 100.55 -35.38 REMARK 500 1 TYR A 225 -4.72 -56.13 REMARK 500 1 SER A 230 164.00 56.96 REMARK 500 1 SER B 243 11.60 -69.08 REMARK 500 1 ALA B 261 108.40 -38.22 REMARK 500 1 THR B 269 156.17 -43.15 REMARK 500 1 THR B 272 68.68 -167.70 REMARK 500 1 TYR B 273 -168.02 -62.76 REMARK 500 1 LYS B 280 87.15 -53.78 REMARK 500 1 ILE B 282 147.33 61.59 REMARK 500 1 ASN B 298 71.90 -54.92 REMARK 500 1 PRO B 301 -83.64 -70.27 REMARK 500 1 LYS B 302 99.97 25.84 REMARK 500 1 ARG B 303 -82.95 -136.75 REMARK 500 1 VAL B 306 77.69 -152.19 REMARK 500 1 ALA B 307 -5.75 170.83 REMARK 500 1 GLU B 308 -1.58 58.03 REMARK 500 1 TYR B 324 -126.75 -130.61 REMARK 500 1 ASN B 325 -117.70 22.10 REMARK 500 1 ARG B 332 119.77 -23.64 REMARK 500 1 ARG B 334 15.39 -159.83 REMARK 500 1 TYR B 335 96.03 -160.33 REMARK 500 2 SER A 170 52.87 -167.61 REMARK 500 2 GLU A 172 -30.31 -137.70 REMARK 500 2 CYS A 194 134.21 -20.48 REMARK 500 2 ASP A 195 -13.14 75.61 REMARK 500 2 GLU A 196 -176.01 -50.18 REMARK 500 2 TYR A 198 -157.36 -152.86 REMARK 500 2 HIS A 207 -72.45 -79.68 REMARK 500 2 TRP A 209 -164.43 -75.96 REMARK 500 2 SER A 230 66.25 61.90 REMARK 500 2 ALA B 261 104.49 -40.64 REMARK 500 2 THR B 272 65.66 -161.99 REMARK 500 2 TYR B 273 -164.67 -62.93 REMARK 500 2 LYS B 280 84.81 -60.03 REMARK 500 2 ILE B 282 137.16 60.10 REMARK 500 2 ASN B 298 87.58 25.24 REMARK 500 2 ASP B 299 104.19 -34.91 REMARK 500 2 SER B 300 30.64 -147.32 REMARK 500 2 PRO B 301 -149.60 -88.05 REMARK 500 2 LYS B 302 108.80 75.53 REMARK 500 2 ARG B 303 -70.38 -116.43 REMARK 500 REMARK 500 THIS ENTRY HAS 660 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LUK RELATED DB: PDB REMARK 900 CIS SH2 DOMAIN REMARK 900 RELATED ID: 1LUN RELATED DB: PDB REMARK 900 TRANS SH2 DOMAIN REMARK 900 RELATED ID: 2RNA RELATED DB: PDB REMARK 900 SH3 DOMAIN REMARK 900 RELATED ID: 1AWJ RELATED DB: PDB REMARK 900 SH3 PEPTIDE COMPLEX REMARK 900 RELATED ID: 2ETZ RELATED DB: PDB REMARK 900 SH2 PEPTIDE COMPLEX REMARK 900 RELATED ID: 2K79 RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE DBREF 2K7A A 171 231 UNP Q03526 ITK_MOUSE 177 237 DBREF 2K7A B 232 338 UNP Q03526 ITK_MOUSE 238 344 SEQADV 2K7A GLY A 169 UNP Q03526 EXPRESSION TAG SEQADV 2K7A SER A 170 UNP Q03526 EXPRESSION TAG SEQADV 2K7A GLY B 230 UNP Q03526 EXPRESSION TAG SEQADV 2K7A SER B 231 UNP Q03526 EXPRESSION TAG SEQADV 2K7A GLY B 339 UNP Q03526 EXPRESSION TAG SEQRES 1 A 63 GLY SER PRO GLU GLU THR LEU VAL ILE ALA LEU TYR ASP SEQRES 2 A 63 TYR GLN THR ASN ASP PRO GLN GLU LEU ALA LEU ARG CYS SEQRES 3 A 63 ASP GLU GLU TYR TYR LEU LEU ASP SER SER GLU ILE HIS SEQRES 4 A 63 TRP TRP ARG VAL GLN ASP LYS ASN GLY HIS GLU GLY TYR SEQRES 5 A 63 ALA PRO SER SER TYR LEU VAL GLU LYS SER PRO SEQRES 1 B 110 GLY SER ASN ASN LEU GLU THR TYR GLU TRP TYR ASN LYS SEQRES 2 B 110 SER ILE SER ARG ASP LYS ALA GLU LYS LEU LEU LEU ASP SEQRES 3 B 110 THR GLY LYS GLU GLY ALA PHE MET VAL ARG ASP SER ARG SEQRES 4 B 110 THR PRO GLY THR TYR THR VAL SER VAL PHE THR LYS ALA SEQRES 5 B 110 ILE ILE SER GLU ASN PRO CYS ILE LYS HIS TYR HIS ILE SEQRES 6 B 110 LYS GLU THR ASN ASP SER PRO LYS ARG TYR TYR VAL ALA SEQRES 7 B 110 GLU LYS TYR VAL PHE ASP SER ILE PRO LEU LEU ILE GLN SEQRES 8 B 110 TYR HIS GLN TYR ASN GLY GLY GLY LEU VAL THR ARG LEU SEQRES 9 B 110 ARG TYR PRO VAL CYS GLY HELIX 1 1 ASN B 233 TYR B 237 5 5 HELIX 2 2 SER B 245 GLY B 257 1 13 HELIX 3 3 SER B 314 HIS B 322 1 9 SHEET 1 A 2 VAL A 211 GLN A 212 0 SHEET 2 A 2 GLU A 218 GLY A 219 -1 O GLY A 219 N VAL A 211 SHEET 1 B 4 ILE B 289 TYR B 292 0 SHEET 2 B 4 THR B 274 PHE B 278 -1 N VAL B 277 O LYS B 290 SHEET 3 B 4 ALA B 261 ARG B 265 -1 N ALA B 261 O PHE B 278 SHEET 4 B 4 TYR B 335 PRO B 336 1 O TYR B 335 N PHE B 262 CISPEP 1 ASN B 286 PRO B 287 1 -0.50 CISPEP 2 SER B 300 PRO B 301 1 0.57 CISPEP 3 ASN B 286 PRO B 287 2 -0.56 CISPEP 4 SER B 300 PRO B 301 2 -1.88 CISPEP 5 ASN B 286 PRO B 287 3 -0.50 CISPEP 6 SER B 300 PRO B 301 3 -0.23 CISPEP 7 ASN B 286 PRO B 287 4 -0.85 CISPEP 8 SER B 300 PRO B 301 4 -1.23 CISPEP 9 ASN B 286 PRO B 287 5 -0.31 CISPEP 10 SER B 300 PRO B 301 5 0.86 CISPEP 11 ASN B 286 PRO B 287 6 -0.82 CISPEP 12 SER B 300 PRO B 301 6 -1.14 CISPEP 13 ASN B 286 PRO B 287 7 -0.59 CISPEP 14 SER B 300 PRO B 301 7 -2.36 CISPEP 15 ASN B 286 PRO B 287 8 -0.37 CISPEP 16 SER B 300 PRO B 301 8 -1.84 CISPEP 17 ASN B 286 PRO B 287 9 -0.23 CISPEP 18 SER B 300 PRO B 301 9 -1.40 CISPEP 19 ASN B 286 PRO B 287 10 -0.24 CISPEP 20 SER B 300 PRO B 301 10 -0.16 CISPEP 21 ASN B 286 PRO B 287 11 -0.52 CISPEP 22 SER B 300 PRO B 301 11 -1.61 CISPEP 23 ASN B 286 PRO B 287 12 -0.65 CISPEP 24 SER B 300 PRO B 301 12 -1.61 CISPEP 25 ASN B 286 PRO B 287 13 -0.76 CISPEP 26 SER B 300 PRO B 301 13 -2.20 CISPEP 27 ASN B 286 PRO B 287 14 -0.18 CISPEP 28 SER B 300 PRO B 301 14 -1.69 CISPEP 29 ASN B 286 PRO B 287 15 -0.33 CISPEP 30 SER B 300 PRO B 301 15 -1.46 CISPEP 31 ASN B 286 PRO B 287 16 -0.56 CISPEP 32 SER B 300 PRO B 301 16 0.11 CISPEP 33 ASN B 286 PRO B 287 17 -0.40 CISPEP 34 SER B 300 PRO B 301 17 -0.14 CISPEP 35 ASN B 286 PRO B 287 18 -0.52 CISPEP 36 SER B 300 PRO B 301 18 -0.02 CISPEP 37 ASN B 286 PRO B 287 19 -0.12 CISPEP 38 SER B 300 PRO B 301 19 0.57 CISPEP 39 ASN B 286 PRO B 287 20 -0.70 CISPEP 40 SER B 300 PRO B 301 20 -1.85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1