HEADER    REPLICATION/DNA                         10-AUG-08   2K7F              
TITLE     HADDOCK CALCULATED MODEL OF THE COMPLEX BETWEEN THE BRCT REGION OF RFC
TITLE    2 P140 AND DSDNA                                                       
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: REPLICATION FACTOR C SUBUNIT 1;                            
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: BRCT DOMAIN (UNP RESIDUES 375-480);                        
COMPND   5 SYNONYM: ACTIVATOR 1 SUBUNIT 1, REPLICATION FACTOR C LARGE SUBUNIT,  
COMPND   6 RF-C 140 KDA SUBUNIT, ACTIVATOR 1 140 KDA SUBUNIT, A1 140 KDA        
COMPND   7 SUBUNIT, ACTIVATOR 1 LARGE SUBUNIT, DNA-BINDING PROTEIN PO-GA;       
COMPND   8 ENGINEERED: YES;                                                     
COMPND   9 MOL_ID: 2;                                                           
COMPND  10 MOLECULE: 5'-D(P*DCP*DGP*DAP*DCP*DCP*DTP*DCP*DGP*DAP*DGP*DAP*DTP*DCP*
COMPND  11 DA)-3';                                                              
COMPND  12 CHAIN: B;                                                            
COMPND  13 ENGINEERED: YES;                                                     
COMPND  14 OTHER_DETAILS: DNA STRAND;                                           
COMPND  15 MOL_ID: 3;                                                           
COMPND  16 MOLECULE: 5'-D(P*DCP*DTP*DCP*DGP*DAP*DGP*DGP*DTP*DCP*DG)-3';         
COMPND  17 CHAIN: C;                                                            
COMPND  18 ENGINEERED: YES;                                                     
COMPND  19 OTHER_DETAILS: DNA STRAND PRIMER                                     
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: RFC1, RFC140;                                                  
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21;                                      
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PET20B;                                   
SOURCE  11 MOL_ID: 2;                                                           
SOURCE  12 SYNTHETIC: YES;                                                      
SOURCE  13 MOL_ID: 3;                                                           
SOURCE  14 SYNTHETIC: YES                                                       
KEYWDS    BRCT, DNA, HADDOCK, MODEL, COMPLEX, PROTEIN, ACTIVATOR, ATP-BINDING,  
KEYWDS   2 DNA REPLICATION, DNA-BINDING, METAL-BINDING, NUCLEOTIDE-BINDING,     
KEYWDS   3 NUCLEUS, PHOSPHOPROTEIN, TRANSCRIPTION, TRANSCRIPTION REGULATION,    
KEYWDS   4 ZINC-FINGER, REPLICATION-DNA COMPLEX                                 
EXPDTA    SOLUTION NMR                                                          
NUMMDL    4                                                                     
AUTHOR    M.KOBAYASHI,E.AB,A.BONVIN,G.SIEGAL                                    
REVDAT   3   01-MAY-24 2K7F    1       SEQADV                                   
REVDAT   2   16-FEB-11 2K7F    1       JRNL                                     
REVDAT   1   08-SEP-09 2K7F    0                                                
JRNL        AUTH   M.KOBAYASHI,E.AB,A.M.BONVIN,G.SIEGAL                         
JRNL        TITL   STRUCTURE OF THE DNA-BOUND BRCA1 C-TERMINAL REGION FROM      
JRNL        TITL 2 HUMAN REPLICATION FACTOR C P140 AND MODEL OF THE PROTEIN-DNA 
JRNL        TITL 3 COMPLEX.                                                     
JRNL        REF    J.BIOL.CHEM.                  V. 285 10087 2010              
JRNL        REFN                   ISSN 0021-9258                               
JRNL        PMID   20081198                                                     
JRNL        DOI    10.1074/JBC.M109.054106                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : HADDOCK 2.0, HADDOCK 2.0                             
REMARK   3   AUTHORS     : DOMINGUEZ C., BOELENS R AND BONVIN AMJJ., JACS       
REMARK   3                 125, 1731 (2003) (HADDOCK), DOMINGUEZ C., BOELENS    
REMARK   3                 R AND BONVIN AMJJ., JACS 125, 1731 (2003) (HADDOCK)  
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: THE REFINEMENT METHOD CAN BE FOUND IN     
REMARK   3  DOMINGUEZ C., BOELENS R AND BONVIN AMJJ., JACS 125, 1731 (2003)     
REMARK   4                                                                      
REMARK   4 2K7F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-08.                  
REMARK 100 THE DEPOSITION ID IS D_1000100770.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.5                                
REMARK 210  IONIC STRENGTH                 : 5                                  
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 0.3 MM [U-98% 13C; U-98% 15N]      
REMARK 210                                   BRCT REGION RFC P140, 0.3 MM DNA   
REMARK 210                                   STRAND, 0.3 MM DNA STRAND PRIMER,  
REMARK 210                                   95% H2O/5% D2O                     
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D NOESY; F1 ISOTOPE FILTERED 2D   
REMARK 210                                   NOESY; F1,F2 ISOTOPE FILTERED 2D   
REMARK 210                                   NOESY                              
REMARK 210  SPECTROMETER FIELD STRENGTH    : 900 MHZ                            
REMARK 210  SPECTROMETER MODEL             : DMX                                
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NULL                               
REMARK 210   METHOD USED                   : HADDOCK                            
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 200                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 4                                  
REMARK 210 CONFORMERS, SELECTION CRITERIA  : BACK CALCULATED DATA AGREE WITH    
REMARK 210                                   EXPERIMENTAL NOESY SPECTRUM        
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O2    DC B     1     H22   DG C    28              0.96            
REMARK 500   HZ1  LYS A   427     OE2  GLU A   431              1.55            
REMARK 500   O2    DC B     1     N2    DG C    28              1.97            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A 396       21.70   -156.81                                   
REMARK 500  1 LYS A 397      -42.51   -143.35                                   
REMARK 500  1 ILE A 399       85.18     61.32                                   
REMARK 500  1 LEU A 418     -159.61   -107.13                                   
REMARK 500  1 SER A 420       96.04   -160.59                                   
REMARK 500  1 ASN A 446      -38.01     73.04                                   
REMARK 500  1 ASP A 471     -167.57   -103.08                                   
REMARK 500  2 ARG A 376       96.78     63.56                                   
REMARK 500  2 ILE A 399       89.48     68.08                                   
REMARK 500  2 ASN A 446      -51.11     74.10                                   
REMARK 500  3 SER A 396        6.77   -159.46                                   
REMARK 500  3 LYS A 397      -36.91   -134.53                                   
REMARK 500  3 ILE A 399       87.34     60.61                                   
REMARK 500  3 SER A 420       98.30   -163.16                                   
REMARK 500  3 ASN A 440      128.09   -176.10                                   
REMARK 500  3 ASN A 446      -39.05     72.22                                   
REMARK 500  3 ASP A 471     -165.63   -113.24                                   
REMARK 500  4 ALA A 393       46.72    -95.75                                   
REMARK 500  4 SER A 396       16.33   -143.66                                   
REMARK 500  4 LYS A 397      -41.61   -142.82                                   
REMARK 500  4 ILE A 399       83.23     66.68                                   
REMARK 500  4 LEU A 418     -158.68   -107.21                                   
REMARK 500  4 SER A 420       98.48   -165.73                                   
REMARK 500  4 ASN A 440      121.53   -173.00                                   
REMARK 500  4 ASN A 446      -39.21     73.62                                   
REMARK 500  4 ASP A 471     -167.29   -112.24                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2K6G   RELATED DB: PDB                                   
REMARK 900 BRCT REGION OF RFC P140                                              
REMARK 900 RELATED ID: 2EBU   RELATED DB: PDB                                   
REMARK 900 BRCT DOMAIN OF RFC P40                                               
DBREF  2K7F A  375   480  UNP    P35251   RFC1_HUMAN     375    480             
DBREF  2K7F B    1    14  PDB    2K7F     2K7F             1     14             
DBREF  2K7F C   19    28  PDB    2K7F     2K7F            19     28             
SEQADV 2K7F ASN A  481  UNP  P35251              EXPRESSION TAG                 
SEQADV 2K7F LEU A  482  UNP  P35251              EXPRESSION TAG                 
SEQADV 2K7F GLU A  483  UNP  P35251              EXPRESSION TAG                 
SEQRES   1 A  109  LYS ARG THR ASN TYR GLN ALA TYR ARG SER TYR LEU ASN          
SEQRES   2 A  109  ARG GLU GLY PRO LYS ALA LEU GLY SER LYS GLU ILE PRO          
SEQRES   3 A  109  LYS GLY ALA GLU ASN CYS LEU GLU GLY LEU ILE PHE VAL          
SEQRES   4 A  109  ILE THR GLY VAL LEU GLU SER ILE GLU ARG ASP GLU ALA          
SEQRES   5 A  109  LYS SER LEU ILE GLU ARG TYR GLY GLY LYS VAL THR GLY          
SEQRES   6 A  109  ASN VAL SER LYS LYS THR ASN TYR LEU VAL MET GLY ARG          
SEQRES   7 A  109  ASP SER GLY GLN SER LYS SER ASP LYS ALA ALA ALA LEU          
SEQRES   8 A  109  GLY THR LYS ILE ILE ASP GLU ASP GLY LEU LEU ASN LEU          
SEQRES   9 A  109  ILE ARG ASN LEU GLU                                          
SEQRES   1 B   14   DC  DG  DA  DC  DC  DT  DC  DG  DA  DG  DA  DT  DC          
SEQRES   2 B   14   DA                                                          
SEQRES   1 C   10   DC  DT  DC  DG  DA  DG  DG  DT  DC  DG                      
HELIX    1   1 ASN A  378  ALA A  381  5                                   4    
HELIX    2   2 TYR A  382  ARG A  388  1                                   7    
HELIX    3   3 ALA A  403  GLU A  408  5                                   6    
HELIX    4   4 GLU A  422  TYR A  433  1                                  12    
HELIX    5   5 GLY A  455  GLY A  466  1                                  12    
HELIX    6   6 ASP A  471  GLU A  483  1                                  13    
SHEET    1   A 3 ILE A 411  THR A 415  0                                        
SHEET    2   A 3 ASN A 446  MET A 450  1  O  VAL A 449   N  THR A 415           
SHEET    3   A 3 LYS A 468  ILE A 470  1  O  ILE A 470   N  LEU A 448           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1