HEADER REPLICATION/DNA 10-AUG-08 2K7F TITLE HADDOCK CALCULATED MODEL OF THE COMPLEX BETWEEN THE BRCT REGION OF RFC TITLE 2 P140 AND DSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICATION FACTOR C SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRCT DOMAIN (UNP RESIDUES 375-480); COMPND 5 SYNONYM: ACTIVATOR 1 SUBUNIT 1, REPLICATION FACTOR C LARGE SUBUNIT, COMPND 6 RF-C 140 KDA SUBUNIT, ACTIVATOR 1 140 KDA SUBUNIT, A1 140 KDA COMPND 7 SUBUNIT, ACTIVATOR 1 LARGE SUBUNIT, DNA-BINDING PROTEIN PO-GA; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 5'-D(P*DCP*DGP*DAP*DCP*DCP*DTP*DCP*DGP*DAP*DGP*DAP*DTP*DCP* COMPND 11 DA)-3'; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: DNA STRAND; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: 5'-D(P*DCP*DTP*DCP*DGP*DAP*DGP*DGP*DTP*DCP*DG)-3'; COMPND 17 CHAIN: C; COMPND 18 ENGINEERED: YES; COMPND 19 OTHER_DETAILS: DNA STRAND PRIMER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RFC1, RFC140; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET20B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS BRCT, DNA, HADDOCK, MODEL, COMPLEX, PROTEIN, ACTIVATOR, ATP-BINDING, KEYWDS 2 DNA REPLICATION, DNA-BINDING, METAL-BINDING, NUCLEOTIDE-BINDING, KEYWDS 3 NUCLEUS, PHOSPHOPROTEIN, TRANSCRIPTION, TRANSCRIPTION REGULATION, KEYWDS 4 ZINC-FINGER, REPLICATION-DNA COMPLEX EXPDTA SOLUTION NMR NUMMDL 4 AUTHOR M.KOBAYASHI,E.AB,A.BONVIN,G.SIEGAL REVDAT 3 01-MAY-24 2K7F 1 SEQADV REVDAT 2 16-FEB-11 2K7F 1 JRNL REVDAT 1 08-SEP-09 2K7F 0 JRNL AUTH M.KOBAYASHI,E.AB,A.M.BONVIN,G.SIEGAL JRNL TITL STRUCTURE OF THE DNA-BOUND BRCA1 C-TERMINAL REGION FROM JRNL TITL 2 HUMAN REPLICATION FACTOR C P140 AND MODEL OF THE PROTEIN-DNA JRNL TITL 3 COMPLEX. JRNL REF J.BIOL.CHEM. V. 285 10087 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20081198 JRNL DOI 10.1074/JBC.M109.054106 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : HADDOCK 2.0, HADDOCK 2.0 REMARK 3 AUTHORS : DOMINGUEZ C., BOELENS R AND BONVIN AMJJ., JACS REMARK 3 125, 1731 (2003) (HADDOCK), DOMINGUEZ C., BOELENS REMARK 3 R AND BONVIN AMJJ., JACS 125, 1731 (2003) (HADDOCK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE REFINEMENT METHOD CAN BE FOUND IN REMARK 3 DOMINGUEZ C., BOELENS R AND BONVIN AMJJ., JACS 125, 1731 (2003) REMARK 4 REMARK 4 2K7F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000100770. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 5 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-98% 13C; U-98% 15N] REMARK 210 BRCT REGION RFC P140, 0.3 MM DNA REMARK 210 STRAND, 0.3 MM DNA STRAND PRIMER, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; F1 ISOTOPE FILTERED 2D REMARK 210 NOESY; F1,F2 ISOTOPE FILTERED 2D REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : HADDOCK REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 4 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH REMARK 210 EXPERIMENTAL NOESY SPECTRUM REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 DC B 1 H22 DG C 28 0.96 REMARK 500 HZ1 LYS A 427 OE2 GLU A 431 1.55 REMARK 500 O2 DC B 1 N2 DG C 28 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 396 21.70 -156.81 REMARK 500 1 LYS A 397 -42.51 -143.35 REMARK 500 1 ILE A 399 85.18 61.32 REMARK 500 1 LEU A 418 -159.61 -107.13 REMARK 500 1 SER A 420 96.04 -160.59 REMARK 500 1 ASN A 446 -38.01 73.04 REMARK 500 1 ASP A 471 -167.57 -103.08 REMARK 500 2 ARG A 376 96.78 63.56 REMARK 500 2 ILE A 399 89.48 68.08 REMARK 500 2 ASN A 446 -51.11 74.10 REMARK 500 3 SER A 396 6.77 -159.46 REMARK 500 3 LYS A 397 -36.91 -134.53 REMARK 500 3 ILE A 399 87.34 60.61 REMARK 500 3 SER A 420 98.30 -163.16 REMARK 500 3 ASN A 440 128.09 -176.10 REMARK 500 3 ASN A 446 -39.05 72.22 REMARK 500 3 ASP A 471 -165.63 -113.24 REMARK 500 4 ALA A 393 46.72 -95.75 REMARK 500 4 SER A 396 16.33 -143.66 REMARK 500 4 LYS A 397 -41.61 -142.82 REMARK 500 4 ILE A 399 83.23 66.68 REMARK 500 4 LEU A 418 -158.68 -107.21 REMARK 500 4 SER A 420 98.48 -165.73 REMARK 500 4 ASN A 440 121.53 -173.00 REMARK 500 4 ASN A 446 -39.21 73.62 REMARK 500 4 ASP A 471 -167.29 -112.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2K6G RELATED DB: PDB REMARK 900 BRCT REGION OF RFC P140 REMARK 900 RELATED ID: 2EBU RELATED DB: PDB REMARK 900 BRCT DOMAIN OF RFC P40 DBREF 2K7F A 375 480 UNP P35251 RFC1_HUMAN 375 480 DBREF 2K7F B 1 14 PDB 2K7F 2K7F 1 14 DBREF 2K7F C 19 28 PDB 2K7F 2K7F 19 28 SEQADV 2K7F ASN A 481 UNP P35251 EXPRESSION TAG SEQADV 2K7F LEU A 482 UNP P35251 EXPRESSION TAG SEQADV 2K7F GLU A 483 UNP P35251 EXPRESSION TAG SEQRES 1 A 109 LYS ARG THR ASN TYR GLN ALA TYR ARG SER TYR LEU ASN SEQRES 2 A 109 ARG GLU GLY PRO LYS ALA LEU GLY SER LYS GLU ILE PRO SEQRES 3 A 109 LYS GLY ALA GLU ASN CYS LEU GLU GLY LEU ILE PHE VAL SEQRES 4 A 109 ILE THR GLY VAL LEU GLU SER ILE GLU ARG ASP GLU ALA SEQRES 5 A 109 LYS SER LEU ILE GLU ARG TYR GLY GLY LYS VAL THR GLY SEQRES 6 A 109 ASN VAL SER LYS LYS THR ASN TYR LEU VAL MET GLY ARG SEQRES 7 A 109 ASP SER GLY GLN SER LYS SER ASP LYS ALA ALA ALA LEU SEQRES 8 A 109 GLY THR LYS ILE ILE ASP GLU ASP GLY LEU LEU ASN LEU SEQRES 9 A 109 ILE ARG ASN LEU GLU SEQRES 1 B 14 DC DG DA DC DC DT DC DG DA DG DA DT DC SEQRES 2 B 14 DA SEQRES 1 C 10 DC DT DC DG DA DG DG DT DC DG HELIX 1 1 ASN A 378 ALA A 381 5 4 HELIX 2 2 TYR A 382 ARG A 388 1 7 HELIX 3 3 ALA A 403 GLU A 408 5 6 HELIX 4 4 GLU A 422 TYR A 433 1 12 HELIX 5 5 GLY A 455 GLY A 466 1 12 HELIX 6 6 ASP A 471 GLU A 483 1 13 SHEET 1 A 3 ILE A 411 THR A 415 0 SHEET 2 A 3 ASN A 446 MET A 450 1 O VAL A 449 N THR A 415 SHEET 3 A 3 LYS A 468 ILE A 470 1 O ILE A 470 N LEU A 448 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1