HEADER ALLERGEN 11-AUG-08 2K7H TITLE NMR SOLUTION STRUCTURE OF SOYBEAN ALLERGEN GLY M 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRESS-INDUCED PROTEIN SAM22; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-158; COMPND 5 SYNONYM: STARVATION-ASSOCIATED MESSAGE 22, ALLERGEN GLY M 4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET11A KEYWDS ALLERGENS, SOYBEAN, PROTEIN, ALLERGEN, PATHOGENESIS-RELATED PROTEIN, KEYWDS 2 PLANT DEFENSE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.BERKNER,P.NEUDECKER,D.MITTAG,B.K.BALLMER-WEBER,K.SCHWEIMER, AUTHOR 2 S.VIETHS,P.ROESCH REVDAT 2 16-MAR-22 2K7H 1 REMARK REVDAT 1 05-MAY-09 2K7H 0 JRNL AUTH H.BERKNER,P.NEUDECKER,D.MITTAG,B.K.BALLMER-WEBER, JRNL AUTH 2 K.SCHWEIMER,S.VIETHS JRNL TITL CROSS-REACTIVITY OF POLLEN AND FOOD ALLERGENS: SOYBEAN GLY M JRNL TITL 2 4 IS A MEMBER OF THE BET V 1 SUPERFAMILY AND CLOSELY JRNL TITL 3 RESEMBLES YELLOW LUPINE PROTEINS JRNL REF BIOSCI.REP. V. 29 183 2009 JRNL REFN ISSN 0144-8463 JRNL PMID 18834331 JRNL DOI 10.1042/BSR20080117 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW 5.2.2, X-PLOR NIH 1.2.1 REMARK 3 AUTHORS : JOHNSON, ONE MOON SCIENTIFIC (NMRVIEW), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA, CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K7H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000100772. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM GLY M 4, 10-50MM POTASSIUM REMARK 210 PHOSPHATE, 0.02% SODIUM AZIDE, REMARK 210 100% D2O; 0.7-1.5MM [U-99% 15N] REMARK 210 GLY M 4, 10-50MM POTASSIUM REMARK 210 PHOSPHATE, 0.02% SODIUM AZIDE, REMARK 210 90% H2O/10% D2O; 0.7-1.5MM [U-99% REMARK 210 13C; U-99% 15N] GLY M 4, 10- REMARK 210 50MM POTASSIUM PHOSPHATE, 0.02% REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-15N HSQC; REMARK 210 3D HNHA; 3D 1H-15N TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D NNH NOESY; 3D HNCA; REMARK 210 3D CBCA(CO)NH; 3D H(CCO)NH; 2D REMARK 210 1H-13C HSQC; 3D HCCH-COSY; 3D 1H- REMARK 210 13C NOESY; 3D CNH NOESY; 3D HNCO; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 C(CO)NH; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.2.2, X-PLOR NIH 1.2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 25 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 29 H ALA A 33 1.54 REMARK 500 O GLU A 44 H ILE A 52 1.55 REMARK 500 O ASP A 25 H VAL A 29 1.56 REMARK 500 H ASP A 7 O LEU A 115 1.58 REMARK 500 H PHE A 3 O TYR A 119 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 72 147.20 -176.97 REMARK 500 2 ASP A 60 23.74 48.13 REMARK 500 5 ASN A 46 13.21 -140.66 REMARK 500 7 LYS A 96 159.21 179.74 REMARK 500 9 ASP A 60 27.73 49.66 REMARK 500 10 LEU A 78 25.98 47.75 REMARK 500 11 SER A 36 30.10 -91.51 REMARK 500 12 LEU A 78 27.62 44.35 REMARK 500 13 SER A 72 145.40 179.40 REMARK 500 14 SER A 72 140.50 -173.62 REMARK 500 15 SER A 72 146.18 -171.47 REMARK 500 16 VAL A 43 -79.28 -80.45 REMARK 500 16 SER A 72 134.64 -177.14 REMARK 500 16 LYS A 96 159.62 179.64 REMARK 500 17 ASP A 60 22.20 48.46 REMARK 500 18 SER A 72 132.92 178.08 REMARK 500 19 ASP A 60 26.28 44.13 REMARK 500 19 SER A 72 144.88 178.27 REMARK 500 19 LEU A 78 29.31 47.88 REMARK 500 20 ASP A 60 24.61 49.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5605 RELATED DB: BMRB DBREF 2K7H A 1 157 UNP P26987 SAM22_SOYBN 2 158 SEQRES 1 A 157 GLY VAL PHE THR PHE GLU ASP GLU ILE ASN SER PRO VAL SEQRES 2 A 157 ALA PRO ALA THR LEU TYR LYS ALA LEU VAL THR ASP ALA SEQRES 3 A 157 ASP ASN VAL ILE PRO LYS ALA LEU ASP SER PHE LYS SER SEQRES 4 A 157 VAL GLU ASN VAL GLU GLY ASN GLY GLY PRO GLY THR ILE SEQRES 5 A 157 LYS LYS ILE THR PHE LEU GLU ASP GLY GLU THR LYS PHE SEQRES 6 A 157 VAL LEU HIS LYS ILE GLU SER ILE ASP GLU ALA ASN LEU SEQRES 7 A 157 GLY TYR SER TYR SER VAL VAL GLY GLY ALA ALA LEU PRO SEQRES 8 A 157 ASP THR ALA GLU LYS ILE THR PHE ASP SER LYS LEU VAL SEQRES 9 A 157 ALA GLY PRO ASN GLY GLY SER ALA GLY LYS LEU THR VAL SEQRES 10 A 157 LYS TYR GLU THR LYS GLY ASP ALA GLU PRO ASN GLN ASP SEQRES 11 A 157 GLU LEU LYS THR GLY LYS ALA LYS ALA ASP ALA LEU PHE SEQRES 12 A 157 LYS ALA ILE GLU ALA TYR LEU LEU ALA HIS PRO ASP TYR SEQRES 13 A 157 ASN HELIX 1 1 ALA A 14 THR A 24 1 11 HELIX 2 2 ASP A 25 LEU A 34 1 10 HELIX 3 3 ASN A 128 HIS A 153 1 26 SHEET 1 A 7 VAL A 2 SER A 11 0 SHEET 2 A 7 SER A 111 GLU A 120 -1 O VAL A 117 N PHE A 5 SHEET 3 A 7 ILE A 97 LYS A 102 -1 N THR A 98 O LYS A 118 SHEET 4 A 7 GLY A 79 GLY A 87 -1 N TYR A 82 O PHE A 99 SHEET 5 A 7 GLU A 62 ASP A 74 -1 N LEU A 67 O GLY A 86 SHEET 6 A 7 ILE A 52 GLU A 59 -1 N ILE A 55 O VAL A 66 SHEET 7 A 7 PHE A 37 GLU A 44 -1 N GLU A 41 O LYS A 54 SHEET 1 B 3 VAL A 2 SER A 11 0 SHEET 2 B 3 SER A 111 GLU A 120 -1 O VAL A 117 N PHE A 5 SHEET 3 B 3 VAL A 104 ALA A 105 -1 N VAL A 104 O ALA A 112 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1