HEADER TRANSFERASE 27-AUG-08 2K7V TITLE DELETIONS IN A SURFACE LOOP DIVERT THE FOLDING OF A PROTEIN DOMAIN TITLE 2 INTO A METASTABLE DIMERIC FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT OF COMPND 3 PYRUVATE DEHYDROGENASE COMPLEX; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP RESIDUES 206-293; COMPND 6 SYNONYM: E2, DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE COMPND 7 DEHYDROGENASE COMPLEX; COMPND 8 EC: 2.3.1.12; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: ACEF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET11C KEYWDS MISFOLDED DIMER, ACYLTRANSFERASE, GLYCOLYSIS, LIPOYL, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.M.STOTT,A.M.YUSOF,R.N.PERHAM,D.D.JONES REVDAT 4 14-JUN-23 2K7V 1 REMARK REVDAT 3 19-FEB-20 2K7V 1 REMARK SEQADV REVDAT 2 22-SEP-09 2K7V 1 JRNL REVDAT 1 15-SEP-09 2K7V 0 JRNL AUTH K.M.STOTT,A.M.YUSOF,R.N.PERHAM,D.D.JONES JRNL TITL A SURFACE LOOP DIRECTS CONFORMATIONAL SWITCHING OF A LIPOYL JRNL TITL 2 DOMAIN BETWEEN A FOLDED AND A NOVEL MISFOLDED STRUCTURE. JRNL REF STRUCTURE V. 17 1117 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19679089 JRNL DOI 10.1016/J.STR.2009.07.001 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA, ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K7V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000100786. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-15N] E2PLIPD4, 20 MM REMARK 210 SODIUM PHOSPHATE, 40 UM TSP, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H NOESY; REMARK 210 3D 1H-15N NOESY; 3D 1H-15N TOCSY; REMARK 210 2D 1H-1H TOCSY; 2D DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 117.52 64.44 REMARK 500 1 VAL A 15 -18.56 -150.99 REMARK 500 1 MET A 21 -171.15 58.17 REMARK 500 1 ALA A 30 149.92 -170.21 REMARK 500 1 GLU A 31 -160.94 57.63 REMARK 500 1 SER A 33 -75.19 -156.49 REMARK 500 1 LEU A 34 162.96 61.32 REMARK 500 1 ILE A 35 101.50 58.99 REMARK 500 1 VAL A 37 -79.84 -107.44 REMARK 500 1 GLU A 38 -71.56 -139.29 REMARK 500 1 LYS A 41 -84.69 -55.47 REMARK 500 1 ALA A 42 -98.59 -164.19 REMARK 500 1 ILE A 71 -50.35 -133.30 REMARK 500 1 ALA A 83 -55.85 -140.40 REMARK 500 1 ALA A 84 -50.28 -167.29 REMARK 500 1 ALA A 86 -41.04 -148.17 REMARK 500 1 ILE B 10 -24.54 -166.38 REMARK 500 1 VAL B 17 95.13 60.95 REMARK 500 1 GLU B 19 15.43 59.87 REMARK 500 1 MET B 21 -40.89 -165.36 REMARK 500 1 LYS B 23 94.26 56.54 REMARK 500 1 VAL B 24 -78.45 -96.08 REMARK 500 1 VAL B 28 -72.46 -81.65 REMARK 500 1 ALA B 29 173.54 60.98 REMARK 500 1 ILE B 35 92.94 61.03 REMARK 500 1 THR B 36 -91.67 52.82 REMARK 500 1 LYS B 41 89.94 -170.12 REMARK 500 1 ALA B 42 -92.43 -113.61 REMARK 500 1 ILE B 71 -50.52 -133.37 REMARK 500 1 ALA B 83 -83.77 62.77 REMARK 500 1 ALA B 84 85.91 56.22 REMARK 500 1 GLN B 88 -33.20 -145.02 REMARK 500 2 VAL A 2 -27.70 -164.80 REMARK 500 2 GLU A 4 -55.96 -126.66 REMARK 500 2 GLU A 19 19.14 59.45 REMARK 500 2 VAL A 20 -179.58 -69.58 REMARK 500 2 VAL A 22 100.18 60.88 REMARK 500 2 LYS A 27 -26.88 -141.51 REMARK 500 2 ALA A 30 -63.70 -103.37 REMARK 500 2 GLN A 32 -76.73 -79.77 REMARK 500 2 SER A 33 95.39 56.96 REMARK 500 2 ILE A 71 -44.70 -132.30 REMARK 500 2 ALA A 86 -171.45 58.61 REMARK 500 2 LYS A 87 -171.77 58.24 REMARK 500 2 VAL B 2 -29.27 -140.70 REMARK 500 2 LYS B 3 -72.94 -77.61 REMARK 500 2 ILE B 10 112.08 62.70 REMARK 500 2 VAL B 15 133.37 65.66 REMARK 500 2 GLU B 16 -0.65 -161.27 REMARK 500 2 THR B 18 -49.56 -171.85 REMARK 500 REMARK 500 THIS ENTRY HAS 483 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15931 RELATED DB: BMRB DBREF 2K7V A 2 89 UNP P06959 ODP2_ECOLI 206 293 DBREF 2K7V B 2 89 UNP P06959 ODP2_ECOLI 206 293 SEQADV 2K7V MET A 1 UNP P06959 EXPRESSION TAG SEQADV 2K7V A UNP P06959 GLY 215 DELETION SEQADV 2K7V A UNP P06959 GLY 216 DELETION SEQADV 2K7V A UNP P06959 ASP 217 DELETION SEQADV 2K7V A UNP P06959 GLU 218 DELETION SEQADV 2K7V MET B 1 UNP P06959 EXPRESSION TAG SEQADV 2K7V B UNP P06959 GLY 215 DELETION SEQADV 2K7V B UNP P06959 GLY 216 DELETION SEQADV 2K7V B UNP P06959 ASP 217 DELETION SEQADV 2K7V B UNP P06959 GLU 218 DELETION SEQRES 1 A 85 MET VAL LYS GLU VAL ASN VAL PRO ASP ILE VAL GLU VAL SEQRES 2 A 85 THR GLU VAL MET VAL LYS VAL GLY ASP LYS VAL ALA ALA SEQRES 3 A 85 GLU GLN SER LEU ILE THR VAL GLU GLY ASP LYS ALA SER SEQRES 4 A 85 MET GLU VAL PRO ALA PRO PHE ALA GLY VAL VAL LYS GLU SEQRES 5 A 85 LEU LYS VAL ASN VAL GLY ASP LYS VAL LYS THR GLY SER SEQRES 6 A 85 LEU ILE MET ILE PHE GLU VAL GLU GLY ALA ALA PRO ALA SEQRES 7 A 85 ALA ALA PRO ALA LYS GLN GLU SEQRES 1 B 85 MET VAL LYS GLU VAL ASN VAL PRO ASP ILE VAL GLU VAL SEQRES 2 B 85 THR GLU VAL MET VAL LYS VAL GLY ASP LYS VAL ALA ALA SEQRES 3 B 85 GLU GLN SER LEU ILE THR VAL GLU GLY ASP LYS ALA SER SEQRES 4 B 85 MET GLU VAL PRO ALA PRO PHE ALA GLY VAL VAL LYS GLU SEQRES 5 B 85 LEU LYS VAL ASN VAL GLY ASP LYS VAL LYS THR GLY SER SEQRES 6 B 85 LEU ILE MET ILE PHE GLU VAL GLU GLY ALA ALA PRO ALA SEQRES 7 B 85 ALA ALA PRO ALA LYS GLN GLU SHEET 1 A 3 SER A 43 PRO A 47 0 SHEET 2 A 3 LEU B 70 GLU B 75 -1 O PHE B 74 N MET A 44 SHEET 3 A 3 VAL B 54 LEU B 57 -1 O LYS B 55 N ILE B 73 SHEET 1 B 3 GLU A 56 LEU A 57 0 SHEET 2 B 3 LEU A 70 GLU A 75 -1 O ILE A 73 N GLU A 56 SHEET 3 B 3 SER B 43 PRO B 47 -1 O VAL B 46 N MET A 72 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1