HEADER ISOMERASE 11-SEP-08 2K8I TITLE SOLUTION STRUCTURE OF E.COLI SLYD COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-171; COMPND 5 SYNONYM: SLYD; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: SLYD, ECOK1_33310, APECO1_3105; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET24A KEYWDS PPIASE, CHAPERONE, ISOMERASE, ROTAMASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR U.WEININGER,J.BALBACH REVDAT 4 01-MAY-24 2K8I 1 REMARK REVDAT 3 26-FEB-20 2K8I 1 REMARK SEQADV REVDAT 2 18-APR-12 2K8I 1 JRNL VERSN REVDAT 1 24-MAR-09 2K8I 0 JRNL AUTH U.WEININGER,C.HAUPT,K.SCHWEIMER,W.GRAUBNER,M.KOVERMANN, JRNL AUTH 2 T.BRUSER,C.SCHOLZ,P.SCHAARSCHMIDT,G.ZOLDAK,F.X.SCHMID, JRNL AUTH 3 J.BALBACH JRNL TITL NMR SOLUTION STRUCTURE OF SLYD FROM ESCHERICHIA COLI: JRNL TITL 2 SPATIAL SEPARATION OF PROLYL ISOMERASE AND CHAPERONE JRNL TITL 3 FUNCTION. JRNL REF J.MOL.BIOL. V. 387 295 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19356587 JRNL DOI 10.1016/J.JMB.2009.01.034 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000100809. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] PROTEIN, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 C(CO)NH; 3D HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 157 HE2 HIS A 162 1.57 REMARK 500 O ALA A 98 H VAL A 105 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 6 6.10 51.63 REMARK 500 1 LEU A 41 -102.99 -113.43 REMARK 500 1 ILE A 42 -163.65 -116.35 REMARK 500 1 ALA A 67 -156.09 -138.90 REMARK 500 1 PHE A 84 40.24 -90.61 REMARK 500 1 LEU A 90 98.87 -66.57 REMARK 500 1 ALA A 111 153.86 178.35 REMARK 500 1 GLU A 113 -156.04 -87.42 REMARK 500 1 HIS A 123 -82.18 -95.10 REMARK 500 1 ALA A 126 -61.36 179.97 REMARK 500 1 GLU A 144 -42.65 69.71 REMARK 500 1 HIS A 159 -70.15 -147.00 REMARK 500 1 HIS A 160 -46.90 169.28 REMARK 500 1 ASP A 163 47.69 -86.08 REMARK 500 1 HIS A 167 -166.22 -106.40 REMARK 500 2 ASP A 6 -5.89 57.57 REMARK 500 2 LEU A 41 -89.10 -120.53 REMARK 500 2 ILE A 42 -166.97 -129.32 REMARK 500 2 ALA A 67 -157.05 -126.83 REMARK 500 2 TYR A 68 -161.93 -79.91 REMARK 500 2 TYR A 71 151.16 -48.75 REMARK 500 2 ASP A 72 90.54 -69.75 REMARK 500 2 PHE A 84 39.94 -98.04 REMARK 500 2 ASP A 88 -74.51 -55.83 REMARK 500 2 GLU A 99 129.90 -38.78 REMARK 500 2 GLN A 102 30.23 -91.64 REMARK 500 2 HIS A 123 -42.05 -147.58 REMARK 500 2 GLU A 144 -33.62 73.31 REMARK 500 2 HIS A 153 -21.09 75.16 REMARK 500 2 HIS A 158 42.20 -103.03 REMARK 500 2 ASP A 163 70.03 60.94 REMARK 500 2 HIS A 166 116.65 69.26 REMARK 500 3 ASP A 6 9.79 45.18 REMARK 500 3 ILE A 42 137.47 -27.93 REMARK 500 3 ALA A 67 -155.68 -126.08 REMARK 500 3 PHE A 84 40.00 -100.51 REMARK 500 3 ASP A 88 -77.86 -63.61 REMARK 500 3 ALA A 111 153.52 176.77 REMARK 500 3 GLU A 113 -157.24 -90.25 REMARK 500 3 ALA A 126 -69.42 62.99 REMARK 500 3 GLU A 144 -31.46 73.17 REMARK 500 3 HIS A 153 -75.30 73.61 REMARK 500 3 ALA A 155 -104.08 56.48 REMARK 500 3 HIS A 156 -62.08 -144.77 REMARK 500 3 HIS A 162 -18.23 -141.36 REMARK 500 3 HIS A 164 35.66 -157.64 REMARK 500 3 HIS A 167 39.26 -81.69 REMARK 500 4 ASP A 6 7.29 51.27 REMARK 500 4 ALA A 67 -92.19 -76.97 REMARK 500 4 TYR A 68 -166.24 -178.62 REMARK 500 REMARK 500 THIS ENTRY HAS 151 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 34 LEU A 35 6 146.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15950 RELATED DB: BMRB DBREF 2K8I A 1 148 UNP A1AGN5 A1AGN5_ECOK1 1 148 SEQADV 2K8I HIS A 149 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I GLY A 150 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I HIS A 151 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I VAL A 152 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I HIS A 153 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I GLY A 154 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I ALA A 155 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I HIS A 156 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I ASP A 157 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I HIS A 158 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I HIS A 159 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I HIS A 160 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I ASP A 161 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I HIS A 162 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I ASP A 163 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I HIS A 164 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I ASP A 165 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I HIS A 166 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I HIS A 167 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I HIS A 168 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I HIS A 169 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I HIS A 170 UNP A1AGN5 EXPRESSION TAG SEQADV 2K8I HIS A 171 UNP A1AGN5 EXPRESSION TAG SEQRES 1 A 171 MET LYS VAL ALA LYS ASP LEU VAL VAL SER LEU ALA TYR SEQRES 2 A 171 GLN VAL ARG THR GLU ASP GLY VAL LEU VAL ASP GLU SER SEQRES 3 A 171 PRO VAL SER ALA PRO LEU ASP TYR LEU HIS GLY HIS GLY SEQRES 4 A 171 SER LEU ILE SER GLY LEU GLU THR ALA LEU GLU GLY HIS SEQRES 5 A 171 GLU VAL GLY ASP LYS PHE ASP VAL ALA VAL GLY ALA ASN SEQRES 6 A 171 ASP ALA TYR GLY GLN TYR ASP GLU ASN LEU VAL GLN ARG SEQRES 7 A 171 VAL PRO LYS ASP VAL PHE MET GLY VAL ASP GLU LEU GLN SEQRES 8 A 171 VAL GLY MET ARG PHE LEU ALA GLU THR ASP GLN GLY PRO SEQRES 9 A 171 VAL PRO VAL GLU ILE THR ALA VAL GLU ASP ASP HIS VAL SEQRES 10 A 171 VAL VAL ASP GLY ASN HIS MET LEU ALA GLY GLN ASN LEU SEQRES 11 A 171 LYS PHE ASN VAL GLU VAL VAL ALA ILE ARG GLU ALA THR SEQRES 12 A 171 GLU GLU GLU LEU ALA HIS GLY HIS VAL HIS GLY ALA HIS SEQRES 13 A 171 ASP HIS HIS HIS ASP HIS ASP HIS ASP HIS HIS HIS HIS SEQRES 14 A 171 HIS HIS HELIX 1 1 SER A 43 GLU A 50 1 8 HELIX 2 2 ASP A 82 MET A 85 5 4 HELIX 3 3 GLU A 144 GLY A 150 1 7 SHEET 1 A 3 LEU A 22 GLU A 25 0 SHEET 2 A 3 LEU A 7 THR A 17 -1 N VAL A 15 O VAL A 23 SHEET 3 A 3 LEU A 32 LEU A 35 -1 O LEU A 32 N LEU A 11 SHEET 1 B 4 LEU A 22 GLU A 25 0 SHEET 2 B 4 LEU A 7 THR A 17 -1 N VAL A 15 O VAL A 23 SHEET 3 B 4 ASN A 129 GLU A 141 -1 O LYS A 131 N ARG A 16 SHEET 4 B 4 LYS A 57 GLY A 63 -1 N PHE A 58 O VAL A 134 SHEET 1 C 4 VAL A 76 PRO A 80 0 SHEET 2 C 4 HIS A 116 ASP A 120 -1 O VAL A 117 N VAL A 79 SHEET 3 C 4 GLY A 103 VAL A 112 -1 N THR A 110 O VAL A 118 SHEET 4 C 4 ARG A 95 THR A 100 -1 N ALA A 98 O VAL A 105 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1