HEADER VIRAL PROTEIN 12-SEP-08 2K8J TITLE SOLUTION STRUCTURE OF HCV P7 TM2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: P7TM2; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: UNP RESIDUES 781 TO 809; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PROTEIN WAS CHEMICALLY SYNTHESIZED. IT IS SOURCE 4 NATURALLY FOUND IN HEPATITIS C VIRUS. KEYWDS P7 POLYPEPTIDE, HCV, ION CHANELING, TRANSMEMBRANE, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR R.MONTSERRET,F.PENIN REVDAT 3 01-DEC-10 2K8J 1 JRNL REVDAT 2 18-AUG-10 2K8J 1 JRNL REMARK REVDAT 1 13-JAN-09 2K8J 0 JRNL AUTH R.MONTSERRET,N.SAINT,C.VANBELLE,A.G.SALVAY,J.P.SIMORRE, JRNL AUTH 2 C.EBEL,N.SAPAY,J.G.RENISIO,A.BOCKMANN,E.STEINMANN, JRNL AUTH 3 T.PIETSCHMANN,J.DUBUISSON,C.CHIPOT,F.PENIN JRNL TITL NMR STRUCTURE AND ION CHANNEL ACTIVITY OF THE P7 PROTEIN JRNL TITL 2 FROM HEPATITIS C VIRUS. JRNL REF J.BIOL.CHEM. V. 285 31446 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20667830 JRNL DOI 10.1074/JBC.M110.122895 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.SAINT,R.MONTSERRET,C.CHIPOT,F.PENIN REMARK 1 TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF THE HCV P7 PROTEIN. REMARK 1 REF METHODS MOL.BIOL. V. 510 125 2009 REMARK 1 REFN ISSN 1064-3745 REMARK 1 PMID 19009258 REMARK 1 DOI 10.1007/978-1-59745-394-3_10 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.16.0 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K8J COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-08. REMARK 100 THE RCSB ID CODE IS RCSB100810. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : NONE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM P7TM2, TRIFLUOROETHANOL/ REMARK 210 WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS; INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR, XPLOR-NIH 2.16.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU X 2 84.05 56.80 REMARK 500 1 PRO X 4 47.43 -88.91 REMARK 500 1 ALA X 7 30.50 -98.24 REMARK 500 1 TYR X 28 -50.94 70.63 REMARK 500 2 ALA X 7 30.63 -98.78 REMARK 500 2 ALA X 27 60.15 -152.84 REMARK 500 3 LEU X 10 -61.05 -109.50 REMARK 500 3 ALA X 22 36.70 -98.41 REMARK 500 3 ALA X 27 81.11 59.08 REMARK 500 4 ALA X 27 44.90 -163.09 REMARK 500 4 TYR X 28 -64.33 -158.06 REMARK 500 5 ALA X 22 38.69 -95.89 REMARK 500 5 ALA X 27 34.98 -164.69 REMARK 500 5 TYR X 28 -41.40 -158.77 REMARK 500 6 LEU X 2 173.82 63.74 REMARK 500 6 ALA X 22 31.65 -95.51 REMARK 500 6 ALA X 27 48.73 -106.34 REMARK 500 7 VAL X 3 -178.84 55.67 REMARK 500 7 PRO X 4 -160.16 -75.49 REMARK 500 7 ALA X 22 30.43 -94.16 REMARK 500 7 ARG X 26 -54.03 -132.96 REMARK 500 7 ALA X 27 51.69 -143.99 REMARK 500 7 TYR X 28 -40.23 74.95 REMARK 500 9 LEU X 2 102.07 59.04 REMARK 500 9 ALA X 22 49.40 -109.20 REMARK 500 10 ALA X 27 54.56 -119.79 REMARK 500 10 TYR X 28 -54.38 -152.15 REMARK 500 11 PRO X 25 -75.52 -79.16 REMARK 500 11 ALA X 27 45.64 -93.20 REMARK 500 12 LEU X 2 -132.62 -153.20 REMARK 500 12 PRO X 4 -93.51 -69.90 REMARK 500 12 TYR X 28 73.72 57.93 REMARK 500 13 LEU X 2 77.20 51.21 REMARK 500 13 TYR X 28 -39.49 -162.92 REMARK 500 14 LEU X 2 99.18 63.70 REMARK 500 14 PRO X 4 36.79 -89.91 REMARK 500 14 ARG X 26 -54.65 -148.72 REMARK 500 14 ALA X 27 -71.46 -133.49 REMARK 500 14 TYR X 28 -61.70 -148.64 REMARK 500 15 LEU X 10 -58.92 -128.67 REMARK 500 15 ARG X 26 -67.28 -94.19 REMARK 500 15 ALA X 27 59.03 -159.62 REMARK 500 15 TYR X 28 -24.57 73.60 REMARK 500 16 PRO X 4 -163.79 -79.13 REMARK 500 16 ARG X 26 48.01 -87.06 REMARK 500 16 TYR X 28 -38.97 -138.27 REMARK 500 17 ALA X 22 51.23 -118.70 REMARK 500 17 ALA X 27 34.61 -169.59 REMARK 500 19 LEU X 2 39.37 -153.27 REMARK 500 19 ARG X 26 -65.42 -139.02 REMARK 500 REMARK 500 THIS ENTRY HAS 81 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG X 1 0.32 SIDE CHAIN REMARK 500 1 ARG X 26 0.31 SIDE CHAIN REMARK 500 2 ARG X 1 0.30 SIDE CHAIN REMARK 500 2 ARG X 26 0.32 SIDE CHAIN REMARK 500 3 ARG X 1 0.32 SIDE CHAIN REMARK 500 3 ARG X 26 0.31 SIDE CHAIN REMARK 500 4 ARG X 1 0.31 SIDE CHAIN REMARK 500 4 ARG X 26 0.32 SIDE CHAIN REMARK 500 5 ARG X 1 0.32 SIDE CHAIN REMARK 500 5 ARG X 26 0.31 SIDE CHAIN REMARK 500 6 ARG X 1 0.32 SIDE CHAIN REMARK 500 6 ARG X 26 0.28 SIDE CHAIN REMARK 500 7 ARG X 1 0.32 SIDE CHAIN REMARK 500 7 ARG X 26 0.32 SIDE CHAIN REMARK 500 8 ARG X 1 0.32 SIDE CHAIN REMARK 500 8 ARG X 26 0.29 SIDE CHAIN REMARK 500 9 ARG X 1 0.31 SIDE CHAIN REMARK 500 9 ARG X 26 0.30 SIDE CHAIN REMARK 500 10 ARG X 1 0.32 SIDE CHAIN REMARK 500 10 ARG X 26 0.32 SIDE CHAIN REMARK 500 11 ARG X 1 0.32 SIDE CHAIN REMARK 500 11 ARG X 26 0.31 SIDE CHAIN REMARK 500 12 ARG X 1 0.29 SIDE CHAIN REMARK 500 12 ARG X 26 0.32 SIDE CHAIN REMARK 500 13 ARG X 1 0.32 SIDE CHAIN REMARK 500 13 ARG X 26 0.32 SIDE CHAIN REMARK 500 14 ARG X 1 0.32 SIDE CHAIN REMARK 500 14 ARG X 26 0.28 SIDE CHAIN REMARK 500 15 ARG X 1 0.32 SIDE CHAIN REMARK 500 15 ARG X 26 0.32 SIDE CHAIN REMARK 500 16 ARG X 1 0.31 SIDE CHAIN REMARK 500 16 ARG X 26 0.32 SIDE CHAIN REMARK 500 17 ARG X 1 0.32 SIDE CHAIN REMARK 500 17 ARG X 26 0.28 SIDE CHAIN REMARK 500 18 ARG X 1 0.31 SIDE CHAIN REMARK 500 18 ARG X 26 0.31 SIDE CHAIN REMARK 500 19 ARG X 1 0.32 SIDE CHAIN REMARK 500 19 ARG X 26 0.31 SIDE CHAIN REMARK 500 20 ARG X 1 0.31 SIDE CHAIN REMARK 500 20 ARG X 26 0.28 SIDE CHAIN REMARK 500 21 ARG X 1 0.32 SIDE CHAIN REMARK 500 21 ARG X 26 0.31 SIDE CHAIN REMARK 500 22 ARG X 1 0.31 SIDE CHAIN REMARK 500 22 ARG X 26 0.31 SIDE CHAIN REMARK 500 23 ARG X 1 0.31 SIDE CHAIN REMARK 500 23 ARG X 26 0.32 SIDE CHAIN REMARK 500 24 ARG X 1 0.30 SIDE CHAIN REMARK 500 24 ARG X 26 0.32 SIDE CHAIN REMARK 500 25 ARG X 1 0.30 SIDE CHAIN REMARK 500 25 ARG X 26 0.32 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 60 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6087 RELATED DB: BMRB REMARK 900 HCV P7 DBREF 2K8J X 1 29 UNP P26662 POLG_HCVJA 781 809 SEQRES 1 X 29 ARG LEU VAL PRO GLY ALA ALA TYR ALA LEU TYR GLY VAL SEQRES 2 X 29 TRP PRO LEU LEU LEU LEU LEU LEU ALA LEU PRO PRO ARG SEQRES 3 X 29 ALA TYR ALA HELIX 1 1 GLY X 5 ALA X 22 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1