HEADER OXIDOREDUCTASE 23-SEP-08 2K8S TITLE SOLUTION NMR STRUCTURE OF DIMERIC THIOREDOXIN-LIKE PROTEIN NE0084 FROM TITLE 2 NITROSOMONAS EUROPEA: NORTHEAST STRUCTURAL GENOMICS TARGET NET6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOMONAS EUROPAEA; SOURCE 3 ORGANISM_TAXID: 915; SOURCE 4 GENE: NE0084; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11 KEYWDS DIMER, THIOREDOXIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 3 OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.R.CORT,T.A.RAMELOT,A.YEE,C.H.ARROWSMITH,G.T.MONTELIONE,M.A.KENNEDY, AUTHOR 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 14-JUN-23 2K8S 1 REMARK REVDAT 2 19-FEB-20 2K8S 1 REMARK REVDAT 1 02-DEC-08 2K8S 0 JRNL AUTH J.R.CORT,T.A.RAMELOT,A.YEE,C.H.ARROWSMITH,M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF DIMERIC THIOREDOXIN-LIKE PROTEIN JRNL TITL 2 NE0084 FROM NITROSOMONAS EUROPEA: NORTHEAST STRUCTURAL JRNL TITL 3 GENOMICS TARGET NET6 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOSTRUCTURE, X-PLOR NIH, CNS REMARK 3 AUTHORS : HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE), SCHWIETERS, KUSZEWSKI, TJANDRA REMARK 3 AND CLORE (X-PLOR NIH), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K8S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000100819. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 300 MM SODIUM CHLORIDE, 10 MM REMARK 210 TRIS, 10 MM DTT, 93% H2O/7% D2O; REMARK 210 300 MM SODIUM CHLORIDE, 10 MM REMARK 210 TRIS, 10 MM DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HNHA; 3D HCCH-TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 4D 1H-13C HMQC-NOESY-HMQC; 3D REMARK 210 C(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOSTRUCTURE, SPARKY, X-PLOR REMARK 210 NIH, VNMR, CNS REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY, FEWEST RESTRAINT REMARK 210 VIOLATIONS, FAVORABLE BACKBONE REMARK 210 CONFORMATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 4 OE2 GLU A 34 1.57 REMARK 500 OD1 ASP A 27 HZ3 LYS B 30 1.57 REMARK 500 HZ1 LYS A 78 O SER A 80 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 21 -68.73 -93.24 REMARK 500 1 THR A 40 -51.56 -157.66 REMARK 500 1 ASN A 69 102.88 66.19 REMARK 500 1 ALA B 2 40.23 -146.88 REMARK 500 1 VAL B 56 -167.74 -74.52 REMARK 500 1 PRO B 57 84.48 11.14 REMARK 500 1 PHE B 70 84.72 58.23 REMARK 500 2 ASP A 62 19.60 59.95 REMARK 500 2 ASN A 69 121.66 67.11 REMARK 500 2 ALA B 21 -64.82 -101.84 REMARK 500 2 THR B 40 -53.57 -153.89 REMARK 500 2 PRO B 57 84.54 14.69 REMARK 500 2 ASP B 62 75.04 46.85 REMARK 500 2 ASN B 69 117.40 -28.00 REMARK 500 2 PHE B 70 105.74 -44.47 REMARK 500 3 ASP A 62 -74.62 65.39 REMARK 500 3 ASN A 69 169.92 66.57 REMARK 500 3 ALA B 21 -69.46 -99.00 REMARK 500 3 THR B 40 -52.59 -141.06 REMARK 500 3 PRO B 57 93.32 12.97 REMARK 500 3 ASN B 69 -174.10 67.30 REMARK 500 4 ALA A 21 -71.10 -100.97 REMARK 500 4 ASP A 62 -53.71 71.03 REMARK 500 4 ASN A 69 -178.70 66.62 REMARK 500 4 ALA B 21 -66.47 -104.05 REMARK 500 4 VAL B 56 -161.10 -79.02 REMARK 500 4 PRO B 57 92.58 11.80 REMARK 500 4 ASN B 69 -161.16 60.76 REMARK 500 5 ALA A 21 -65.58 -124.72 REMARK 500 5 THR A 40 -68.24 -152.23 REMARK 500 5 ASP A 62 -21.98 72.09 REMARK 500 5 ASN A 69 -168.95 65.36 REMARK 500 5 ALA B 21 -69.97 -123.58 REMARK 500 5 THR B 40 -45.43 -156.68 REMARK 500 5 VAL B 56 -167.39 -71.94 REMARK 500 5 PRO B 57 91.95 12.57 REMARK 500 5 ASP B 62 -68.13 67.31 REMARK 500 5 ASN B 69 -171.45 66.07 REMARK 500 6 ALA A 21 -65.74 -99.68 REMARK 500 6 ASP A 62 -23.22 72.87 REMARK 500 6 ASN A 69 121.23 68.52 REMARK 500 6 VAL B 56 -169.23 -71.72 REMARK 500 6 PRO B 57 86.92 16.09 REMARK 500 6 ASP B 62 -70.20 66.00 REMARK 500 6 ASN B 69 118.20 66.22 REMARK 500 6 PHE B 70 101.37 -55.06 REMARK 500 7 ALA A 21 -67.31 -104.27 REMARK 500 7 ASN A 69 102.68 64.77 REMARK 500 7 VAL B 56 -167.66 -79.02 REMARK 500 7 PRO B 57 84.53 12.71 REMARK 500 REMARK 500 THIS ENTRY HAS 169 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL B 56 PRO B 57 1 -138.89 REMARK 500 VAL B 56 PRO B 57 2 -135.99 REMARK 500 VAL B 56 PRO B 57 3 -133.30 REMARK 500 VAL B 56 PRO B 57 4 -135.52 REMARK 500 VAL B 56 PRO B 57 5 -136.51 REMARK 500 VAL B 56 PRO B 57 6 -135.49 REMARK 500 VAL B 56 PRO B 57 7 -135.64 REMARK 500 VAL B 56 PRO B 57 8 -137.26 REMARK 500 VAL B 56 PRO B 57 9 -136.96 REMARK 500 VAL B 56 PRO B 57 10 -137.97 REMARK 500 VAL B 56 PRO B 57 11 -139.06 REMARK 500 VAL B 56 PRO B 57 12 -136.51 REMARK 500 VAL B 56 PRO B 57 13 -135.21 REMARK 500 VAL B 56 PRO B 57 14 -136.46 REMARK 500 VAL B 56 PRO B 57 15 -136.66 REMARK 500 VAL B 56 PRO B 57 16 -136.48 REMARK 500 VAL B 56 PRO B 57 17 -142.09 REMARK 500 VAL B 56 PRO B 57 18 -137.20 REMARK 500 VAL B 56 PRO B 57 19 -136.71 REMARK 500 VAL B 56 PRO B 57 20 -135.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15347 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFTS REMARK 900 RELATED ID: NET6 RELATED DB: TARGETDB DBREF 2K8S A 2 78 UNP Q82Y06 Q82Y06_NITEU 2 78 DBREF 2K8S B 2 78 UNP Q82Y06 Q82Y06_NITEU 2 78 SEQADV 2K8S VAL A 1 UNP Q82Y06 EXPRESSION TAG SEQADV 2K8S GLY A 79 UNP Q82Y06 EXPRESSION TAG SEQADV 2K8S SER A 80 UNP Q82Y06 EXPRESSION TAG SEQADV 2K8S VAL B 1 UNP Q82Y06 EXPRESSION TAG SEQADV 2K8S GLY B 79 UNP Q82Y06 EXPRESSION TAG SEQADV 2K8S SER B 80 UNP Q82Y06 EXPRESSION TAG SEQRES 1 A 80 VAL ALA SER LYS ALA ILE PHE TYR HIS ALA GLY CYS PRO SEQRES 2 A 80 VAL CYS VAL SER ALA GLU GLN ALA VAL ALA ASN ALA ILE SEQRES 3 A 80 ASP PRO SER LYS TYR THR VAL GLU ILE VAL HIS LEU GLY SEQRES 4 A 80 THR ASP LYS ALA ARG ILE ALA GLU ALA GLU LYS ALA GLY SEQRES 5 A 80 VAL LYS SER VAL PRO ALA LEU VAL ILE ASP GLY ALA ALA SEQRES 6 A 80 PHE HIS ILE ASN PHE GLY ALA GLY ILE ASP ASP LEU LYS SEQRES 7 A 80 GLY SER SEQRES 1 B 80 VAL ALA SER LYS ALA ILE PHE TYR HIS ALA GLY CYS PRO SEQRES 2 B 80 VAL CYS VAL SER ALA GLU GLN ALA VAL ALA ASN ALA ILE SEQRES 3 B 80 ASP PRO SER LYS TYR THR VAL GLU ILE VAL HIS LEU GLY SEQRES 4 B 80 THR ASP LYS ALA ARG ILE ALA GLU ALA GLU LYS ALA GLY SEQRES 5 B 80 VAL LYS SER VAL PRO ALA LEU VAL ILE ASP GLY ALA ALA SEQRES 6 B 80 PHE HIS ILE ASN PHE GLY ALA GLY ILE ASP ASP LEU LYS SEQRES 7 B 80 GLY SER HELIX 1 1 CYS A 12 ILE A 26 1 15 HELIX 2 2 ARG A 44 GLY A 52 1 9 HELIX 3 3 ILE A 74 LYS A 78 1 5 HELIX 4 4 CYS B 12 ILE B 26 1 15 HELIX 5 5 ASP B 41 ALA B 43 5 3 HELIX 6 6 ARG B 44 GLY B 52 1 9 HELIX 7 7 ASP B 75 LEU B 77 5 3 SHEET 1 A 4 TYR A 31 HIS A 37 0 SHEET 2 A 4 SER A 3 HIS A 9 1 N SER A 3 O THR A 32 SHEET 3 A 4 SER A 55 ILE A 61 -1 O VAL A 60 N ILE A 6 SHEET 4 A 4 ALA A 64 GLY A 73 -1 O ALA A 72 N VAL A 56 SHEET 1 B 4 THR B 32 HIS B 37 0 SHEET 2 B 4 LYS B 4 HIS B 9 1 N PHE B 7 O VAL B 36 SHEET 3 B 4 SER B 55 ILE B 61 -1 O VAL B 60 N ILE B 6 SHEET 4 B 4 ALA B 64 GLY B 73 -1 O PHE B 66 N LEU B 59 CISPEP 1 VAL A 56 PRO A 57 1 1.26 CISPEP 2 VAL A 56 PRO A 57 2 2.70 CISPEP 3 VAL A 56 PRO A 57 3 -0.41 CISPEP 4 VAL A 56 PRO A 57 4 1.19 CISPEP 5 VAL A 56 PRO A 57 5 0.17 CISPEP 6 VAL A 56 PRO A 57 6 0.10 CISPEP 7 VAL A 56 PRO A 57 7 -0.36 CISPEP 8 VAL A 56 PRO A 57 8 0.32 CISPEP 9 VAL A 56 PRO A 57 9 -1.18 CISPEP 10 VAL A 56 PRO A 57 10 -0.91 CISPEP 11 VAL A 56 PRO A 57 11 -0.04 CISPEP 12 VAL A 56 PRO A 57 12 -1.17 CISPEP 13 VAL A 56 PRO A 57 13 0.34 CISPEP 14 VAL A 56 PRO A 57 14 1.22 CISPEP 15 VAL A 56 PRO A 57 15 3.01 CISPEP 16 VAL A 56 PRO A 57 16 -0.42 CISPEP 17 VAL A 56 PRO A 57 17 2.07 CISPEP 18 VAL A 56 PRO A 57 18 -0.44 CISPEP 19 VAL A 56 PRO A 57 19 -0.86 CISPEP 20 VAL A 56 PRO A 57 20 2.68 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1