data_2K8Z # _entry.id 2K8Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2K8Z pdb_00002k8z 10.2210/pdb2k8z/pdb RCSB RCSB100826 ? ? WWPDB D_1000100826 ? ? BMRB 16212 ? 10.13018/BMR16212 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-04-28 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-02-19 4 'Structure model' 1 3 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code_cs' 2 3 'Structure model' '_pdbx_nmr_software.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2K8Z _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-09-29 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2K90 unspecified 'structure of the lineal analogue d(TGCTTCGT)' PDB 2K97 unspecified 'structure of cyclic octamer d(CGCTCCGT)' BMRB 16212 unspecified . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Viladoms, J.' 1 'Escaja, N.' 2 'Frieden, M.' 3 'Gomez-Pinto, I.' 4 'Pedroso, E.' 5 'Gonzalez, C.' 6 # _citation.id primary _citation.title 'Self-association of short DNA loops through minor groove C:G:G:C tetrads.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 37 _citation.page_first 3264 _citation.page_last 3275 _citation.year 2009 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19321501 _citation.pdbx_database_id_DOI 10.1093/nar/gkp191 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Viladoms, J.' 1 ? primary 'Escaja, N.' 2 ? primary 'Frieden, M.' 3 ? primary 'Gomez-Pinto, I.' 4 ? primary 'Pedroso, E.' 5 ? primary 'Gonzalez, C.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-D(*TP*CP*GP*TP*TP*GP*CP*T)-3'" _entity.formula_weight 2408.589 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DC)(DG)(DT)(DT)(DG)(DC)(DT)' _entity_poly.pdbx_seq_one_letter_code_can TCGTTGCT _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 DT n 1 6 DG n 1 7 DC n 1 8 DT n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DT 8 8 8 DT T A . n B 1 1 DT 1 9 9 DT T B . n B 1 2 DC 2 10 10 DC C B . n B 1 3 DG 3 11 11 DG G B . n B 1 4 DT 4 12 12 DT T B . n B 1 5 DT 5 13 13 DT T B . n B 1 6 DG 6 14 14 DG G B . n B 1 7 DC 7 15 15 DC C B . n B 1 8 DT 8 16 16 DT T B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2K8Z _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2K8Z _struct.title 'Dimeric solution structure of the DNA loop d(TCGTTGCT)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2K8Z _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, quadruplex, DNA-loop, minor groove tetrad' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2K8Z _struct_ref.pdbx_db_accession 2K8Z _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code TCGTTGCT _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2K8Z A 1 ? 8 ? 2K8Z 1 ? 8 ? 1 8 2 1 2K8Z B 1 ? 8 ? 2K8Z 9 ? 16 ? 9 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N3 ? ? ? 1_555 A DG 6 N2 ? ? A DG 3 A DG 6 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 3 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 3 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 3 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 3 B DC 15 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog9 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 6 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 6 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 6 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 7 B DG 11 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog13 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 3 N3 ? ? ? 1_555 B DG 6 N2 ? ? B DG 11 B DG 14 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 "HO5'" A DT 1 ? ? OP1 A DC 2 ? ? 1.37 2 4 "HO5'" A DT 1 ? ? OP2 A DG 3 ? ? 1.42 3 5 "HO5'" A DT 1 ? ? OP1 A DT 8 ? ? 1.38 4 8 "HO5'" A DT 1 ? ? OP1 A DC 7 ? ? 1.39 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 117.72 122.90 -5.18 0.60 N 2 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 113.02 108.30 4.72 0.30 N 3 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 114.51 108.30 6.21 0.30 N 4 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.55 108.30 3.25 0.30 N 5 1 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 109.77 106.00 3.77 0.60 N 6 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 103.76 108.00 -4.24 0.70 N 7 1 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 116.21 119.90 -3.69 0.60 N 8 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.20 108.30 1.90 0.30 N 9 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 117.88 122.90 -5.02 0.60 N 10 1 "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? 109.99 106.00 3.99 0.60 N 11 1 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? "C2'" B DT 9 ? ? 110.37 106.80 3.57 0.50 N 12 1 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.25 122.90 -4.65 0.60 N 13 1 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 111.42 108.30 3.12 0.30 N 14 1 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 116.33 108.30 8.03 0.30 N 15 1 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 111.39 108.30 3.09 0.30 N 16 1 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 109.79 106.00 3.79 0.60 N 17 1 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 118.24 122.90 -4.66 0.60 N 18 2 C5 A DT 1 ? ? C6 A DT 1 ? ? N1 A DT 1 ? ? 119.85 123.70 -3.85 0.60 N 19 2 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 117.13 122.90 -5.77 0.60 N 20 2 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 113.05 108.30 4.75 0.30 N 21 2 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 117.67 121.90 -4.23 0.70 N 22 2 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 114.73 108.30 6.43 0.30 N 23 2 C5 A DT 4 ? ? C6 A DT 4 ? ? N1 A DT 4 ? ? 119.68 123.70 -4.02 0.60 N 24 2 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.56 108.30 3.26 0.30 N 25 2 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 117.92 122.90 -4.98 0.60 N 26 2 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 110.53 106.00 4.53 0.60 N 27 2 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 100.75 108.00 -7.25 0.70 N 28 2 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 116.27 119.90 -3.63 0.60 N 29 2 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.65 108.30 2.35 0.30 N 30 2 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 117.24 122.90 -5.66 0.60 N 31 2 C5 B DT 9 ? ? C6 B DT 9 ? ? N1 B DT 9 ? ? 119.87 123.70 -3.83 0.60 N 32 2 C4 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 122.81 119.00 3.81 0.60 N 33 2 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 117.58 122.90 -5.32 0.60 N 34 2 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 113.54 108.30 5.24 0.30 N 35 2 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 113.08 108.30 4.78 0.30 N 36 2 C5 B DT 12 ? ? C6 B DT 12 ? ? N1 B DT 12 ? ? 119.51 123.70 -4.19 0.60 N 37 2 C6 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 118.39 122.90 -4.51 0.60 N 38 2 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 112.09 108.30 3.79 0.30 N 39 2 C6 B DT 13 ? ? C5 B DT 13 ? ? C7 B DT 13 ? ? 117.97 122.90 -4.93 0.60 N 40 2 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 110.11 106.00 4.11 0.60 N 41 2 N1 B DG 14 ? ? C6 B DG 14 ? ? O6 B DG 14 ? ? 116.16 119.90 -3.74 0.60 N 42 2 C4 B DT 16 ? ? C5 B DT 16 ? ? C6 B DT 16 ? ? 121.76 118.00 3.76 0.60 N 43 2 C5 B DT 16 ? ? C6 B DT 16 ? ? N1 B DT 16 ? ? 119.75 123.70 -3.95 0.60 N 44 2 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 116.60 122.90 -6.30 0.60 N 45 3 C5 A DT 1 ? ? C6 A DT 1 ? ? N1 A DT 1 ? ? 119.72 123.70 -3.98 0.60 N 46 3 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.41 122.90 -4.49 0.60 N 47 3 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.10 108.30 3.80 0.30 N 48 3 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 115.83 108.30 7.53 0.30 N 49 3 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.35 108.30 3.05 0.30 N 50 3 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.53 122.90 -4.37 0.60 N 51 3 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 111.17 106.00 5.17 0.60 N 52 3 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 102.08 108.00 -5.92 0.70 N 53 3 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 116.14 119.90 -3.76 0.60 N 54 3 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.48 108.30 2.18 0.30 N 55 3 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 117.52 122.90 -5.38 0.60 N 56 3 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 117.70 122.90 -5.20 0.60 N 57 3 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 112.54 108.30 4.24 0.30 N 58 3 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 111.99 108.30 3.69 0.30 N 59 3 C6 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 118.48 122.90 -4.42 0.60 N 60 3 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 111.85 108.30 3.55 0.30 N 61 3 C6 B DT 13 ? ? C5 B DT 13 ? ? C7 B DT 13 ? ? 118.78 122.90 -4.12 0.60 N 62 3 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 110.29 106.00 4.29 0.60 N 63 3 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 110.56 108.30 2.26 0.30 N 64 3 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 117.20 122.90 -5.70 0.60 N 65 4 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.73 122.90 -4.17 0.60 N 66 4 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.27 108.30 1.97 0.30 N 67 4 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DT 4 ? ? 127.19 119.70 7.49 1.20 Y 68 4 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.67 108.30 3.37 0.30 N 69 4 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.20 108.30 3.90 0.30 N 70 4 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.88 122.90 -4.02 0.60 N 71 4 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 103.77 108.00 -4.23 0.70 N 72 4 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.01 122.90 -4.89 0.60 N 73 4 C4 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 123.03 119.00 4.03 0.60 N 74 4 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 116.98 122.90 -5.92 0.60 N 75 4 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 115.67 108.30 7.37 0.30 N 76 4 C6 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 118.98 122.90 -3.92 0.60 N 77 4 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 110.39 108.30 2.09 0.30 N 78 4 C6 B DT 13 ? ? C5 B DT 13 ? ? C7 B DT 13 ? ? 118.27 122.90 -4.63 0.60 N 79 4 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 111.57 106.00 5.57 0.60 N 80 4 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 101.30 108.00 -6.70 0.70 N 81 4 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 118.53 122.90 -4.37 0.60 N 82 5 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.25 108.30 2.95 0.30 N 83 5 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 117.56 121.90 -4.34 0.70 N 84 5 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 113.93 108.30 5.63 0.30 N 85 5 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 102.19 108.00 -5.81 0.70 N 86 5 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.39 122.90 -4.51 0.60 N 87 5 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 111.34 108.30 3.04 0.30 N 88 5 N3 B DC 10 ? ? C2 B DC 10 ? ? O2 B DC 10 ? ? 117.60 121.90 -4.30 0.70 N 89 5 C6 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 118.22 122.90 -4.68 0.60 N 90 5 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 110.95 106.00 4.95 0.60 N 91 5 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 103.42 108.00 -4.58 0.70 N 92 5 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 117.96 122.90 -4.94 0.60 N 93 6 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.07 122.90 -4.83 0.60 N 94 6 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.52 108.30 4.22 0.30 N 95 6 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.44 108.30 4.14 0.30 N 96 6 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.43 108.30 4.13 0.30 N 97 6 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 110.45 106.00 4.45 0.60 N 98 6 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 117.74 122.90 -5.16 0.60 N 99 6 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.86 122.90 -4.04 0.60 N 100 6 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 110.75 108.30 2.45 0.30 N 101 6 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 115.55 108.30 7.25 0.30 N 102 6 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 113.10 108.30 4.80 0.30 N 103 6 C6 B DT 13 ? ? C5 B DT 13 ? ? C7 B DT 13 ? ? 118.81 122.90 -4.09 0.60 N 104 6 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 111.20 106.00 5.20 0.60 N 105 6 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 103.69 108.00 -4.31 0.70 N 106 6 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 117.98 122.90 -4.92 0.60 N 107 7 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.63 122.90 -4.27 0.60 N 108 7 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.00 108.30 3.70 0.30 N 109 7 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 117.20 121.90 -4.70 0.70 N 110 7 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.81 122.90 -4.09 0.60 N 111 7 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.94 108.30 2.64 0.30 N 112 7 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.79 122.90 -4.11 0.60 N 113 7 "C3'" A DT 5 ? ? "O3'" A DT 5 ? ? P A DG 6 ? ? 127.36 119.70 7.66 1.20 Y 114 7 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 110.33 106.00 4.33 0.60 N 115 7 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 115.64 119.90 -4.26 0.60 N 116 7 "C3'" A DG 6 ? ? "O3'" A DG 6 ? ? P A DC 7 ? ? 127.20 119.70 7.50 1.20 Y 117 7 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 117.83 122.90 -5.07 0.60 N 118 7 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 110.12 108.30 1.82 0.30 N 119 7 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 113.79 108.30 5.49 0.30 N 120 7 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 110.46 108.30 2.16 0.30 N 121 7 C6 B DT 13 ? ? C5 B DT 13 ? ? C7 B DT 13 ? ? 118.54 122.90 -4.36 0.60 N 122 7 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 109.64 106.00 3.64 0.60 N 123 7 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 117.79 122.90 -5.11 0.60 N 124 8 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? "C2'" A DC 2 ? ? 100.39 105.90 -5.51 0.80 N 125 8 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.37 108.30 3.07 0.30 N 126 8 N1 A DG 3 ? ? C6 A DG 3 ? ? O6 A DG 3 ? ? 116.21 119.90 -3.69 0.60 N 127 8 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 115.58 108.30 7.28 0.30 N 128 8 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.70 108.30 2.40 0.30 N 129 8 N3 A DT 5 ? ? C2 A DT 5 ? ? O2 A DT 5 ? ? 118.57 122.30 -3.73 0.60 N 130 8 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.52 122.90 -4.38 0.60 N 131 8 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 109.82 106.00 3.82 0.60 N 132 8 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 116.09 119.90 -3.81 0.60 N 133 8 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.01 122.90 -4.89 0.60 N 134 8 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 119.05 122.90 -3.85 0.60 N 135 8 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 113.69 108.30 5.39 0.30 N 136 8 N1 B DG 11 ? ? C6 B DG 11 ? ? O6 B DG 11 ? ? 116.23 119.90 -3.67 0.60 N 137 8 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 115.04 108.30 6.74 0.30 N 138 8 C6 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 119.14 122.90 -3.76 0.60 N 139 8 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 110.02 106.00 4.02 0.60 N 140 8 N1 B DG 14 ? ? C6 B DG 14 ? ? O6 B DG 14 ? ? 116.25 119.90 -3.65 0.60 N 141 8 "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? "O4'" B DC 15 ? ? 116.97 109.80 7.17 1.10 N 142 8 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 118.51 122.90 -4.39 0.60 N 143 9 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.37 122.90 -4.53 0.60 N 144 9 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.41 108.30 2.11 0.30 N 145 9 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.98 108.30 3.68 0.30 N 146 9 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.45 122.90 -4.45 0.60 N 147 9 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.55 108.30 2.25 0.30 N 148 9 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.99 122.90 -3.91 0.60 N 149 9 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 109.71 106.00 3.71 0.60 N 150 9 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 117.58 122.90 -5.32 0.60 N 151 9 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 119.02 122.90 -3.88 0.60 N 152 9 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 110.31 108.30 2.01 0.30 N 153 9 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 113.80 108.30 5.50 0.30 N 154 9 C4 B DT 12 ? ? C5 B DT 12 ? ? C6 B DT 12 ? ? 121.63 118.00 3.63 0.60 N 155 9 N3 B DT 12 ? ? C2 B DT 12 ? ? O2 B DT 12 ? ? 118.12 122.30 -4.18 0.60 N 156 9 C6 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 118.89 122.90 -4.01 0.60 N 157 9 "C5'" B DT 13 ? ? "C4'" B DT 13 ? ? "O4'" B DT 13 ? ? 118.01 109.80 8.21 1.10 N 158 9 C6 B DT 13 ? ? C5 B DT 13 ? ? C7 B DT 13 ? ? 118.72 122.90 -4.18 0.60 N 159 9 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 110.18 106.00 4.18 0.60 N 160 9 "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? "O4'" B DC 15 ? ? 116.56 109.80 6.76 1.10 N 161 9 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 117.25 122.90 -5.65 0.60 N 162 10 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.10 122.90 -4.80 0.60 N 163 10 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.43 108.30 3.13 0.30 N 164 10 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 117.56 121.90 -4.34 0.70 N 165 10 "C3'" A DT 4 ? ? "C2'" A DT 4 ? ? "C1'" A DT 4 ? ? 97.42 102.40 -4.98 0.80 N 166 10 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 116.73 108.30 8.43 0.30 N 167 10 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.43 108.30 3.13 0.30 N 168 10 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.54 122.90 -4.36 0.60 N 169 10 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 102.19 108.00 -5.81 0.70 N 170 10 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.69 122.90 -4.21 0.60 N 171 10 C4 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 122.63 119.00 3.63 0.60 N 172 10 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 117.11 122.90 -5.79 0.60 N 173 10 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 112.20 108.30 3.90 0.30 N 174 10 N3 B DC 10 ? ? C2 B DC 10 ? ? O2 B DC 10 ? ? 117.54 121.90 -4.36 0.70 N 175 10 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 112.46 108.30 4.16 0.30 N 176 10 C6 B DT 12 ? ? C5 B DT 12 ? ? C7 B DT 12 ? ? 119.11 122.90 -3.79 0.60 N 177 10 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 111.93 108.30 3.63 0.30 N 178 10 C6 B DT 13 ? ? C5 B DT 13 ? ? C7 B DT 13 ? ? 118.68 122.90 -4.22 0.60 N 179 10 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 103.63 108.00 -4.37 0.70 N 180 10 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 117.71 122.90 -5.19 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 3 ? ? 0.052 'SIDE CHAIN' 2 1 DG B 11 ? ? 0.057 'SIDE CHAIN' 3 2 DG A 3 ? ? 0.053 'SIDE CHAIN' 4 2 DG B 11 ? ? 0.066 'SIDE CHAIN' 5 2 DT B 13 ? ? 0.058 'SIDE CHAIN' 6 2 DC B 15 ? ? 0.080 'SIDE CHAIN' 7 3 DC A 2 ? ? 0.071 'SIDE CHAIN' 8 3 DG A 3 ? ? 0.077 'SIDE CHAIN' 9 3 DG A 6 ? ? 0.058 'SIDE CHAIN' 10 4 DC A 7 ? ? 0.074 'SIDE CHAIN' 11 4 DG B 11 ? ? 0.065 'SIDE CHAIN' 12 5 DG A 3 ? ? 0.053 'SIDE CHAIN' 13 5 DC B 15 ? ? 0.080 'SIDE CHAIN' 14 6 DG A 3 ? ? 0.071 'SIDE CHAIN' 15 6 DT A 5 ? ? 0.071 'SIDE CHAIN' 16 6 DC A 7 ? ? 0.062 'SIDE CHAIN' 17 6 DG B 14 ? ? 0.065 'SIDE CHAIN' 18 7 DG A 3 ? ? 0.058 'SIDE CHAIN' 19 7 DC A 7 ? ? 0.060 'SIDE CHAIN' 20 8 DG A 3 ? ? 0.072 'SIDE CHAIN' 21 8 DT B 9 ? ? 0.096 'SIDE CHAIN' 22 8 DG B 11 ? ? 0.065 'SIDE CHAIN' 23 9 DG A 6 ? ? 0.049 'SIDE CHAIN' 24 9 DT B 12 ? ? 0.067 'SIDE CHAIN' 25 9 DG B 14 ? ? 0.058 'SIDE CHAIN' 26 10 DG A 3 ? ? 0.054 'SIDE CHAIN' 27 10 DG B 11 ? ? 0.064 'SIDE CHAIN' 28 10 DC B 15 ? ? 0.069 'SIDE CHAIN' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2K8Z _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2K8Z _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.contents ;0.1-2.0 mM DNA (5'-D(*DTP*DCP*DGP*DTP*DTP*DGP*DCP*DT)-3'), 25 mM sodium phosphate, 100 mM sodium chloride, 10 mM magnesium chloride, 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id ;DNA (5'-D(*DTP*DCP*DGP*DTP*DTP*DGP*DCP*DT)-3') ; ? 0.1-2.0 mM ? 1 'sodium phosphate' 25 ? mM ? 1 'sodium chloride' 100 ? mM ? 1 'magnesium chloride' 10 ? mM ? 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 1 '2D 1H-1H TOCSY' 1 3 1 '2D DQF-COSY' # _pdbx_nmr_refine.entry_id 2K8Z _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm' 'structure solution' Amber . 1 'Guntert, Braun and Wuthrich' 'structure solution' DYANA . 2 Goddard 'chemical shift assignment' Sparky . 3 Goddard 'peak picking' Sparky . 4 Goddard 'data analysis' Sparky . 5 'Guntert, Braun and Wuthrich' refinement DYANA . 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 DT OP3 O N N 72 DT P P N N 73 DT OP1 O N N 74 DT OP2 O N N 75 DT "O5'" O N N 76 DT "C5'" C N N 77 DT "C4'" C N R 78 DT "O4'" O N N 79 DT "C3'" C N S 80 DT "O3'" O N N 81 DT "C2'" C N N 82 DT "C1'" C N R 83 DT N1 N N N 84 DT C2 C N N 85 DT O2 O N N 86 DT N3 N N N 87 DT C4 C N N 88 DT O4 O N N 89 DT C5 C N N 90 DT C7 C N N 91 DT C6 C N N 92 DT HOP3 H N N 93 DT HOP2 H N N 94 DT "H5'" H N N 95 DT "H5''" H N N 96 DT "H4'" H N N 97 DT "H3'" H N N 98 DT "HO3'" H N N 99 DT "H2'" H N N 100 DT "H2''" H N N 101 DT "H1'" H N N 102 DT H3 H N N 103 DT H71 H N N 104 DT H72 H N N 105 DT H73 H N N 106 DT H6 H N N 107 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 DT OP3 P sing N N 75 DT OP3 HOP3 sing N N 76 DT P OP1 doub N N 77 DT P OP2 sing N N 78 DT P "O5'" sing N N 79 DT OP2 HOP2 sing N N 80 DT "O5'" "C5'" sing N N 81 DT "C5'" "C4'" sing N N 82 DT "C5'" "H5'" sing N N 83 DT "C5'" "H5''" sing N N 84 DT "C4'" "O4'" sing N N 85 DT "C4'" "C3'" sing N N 86 DT "C4'" "H4'" sing N N 87 DT "O4'" "C1'" sing N N 88 DT "C3'" "O3'" sing N N 89 DT "C3'" "C2'" sing N N 90 DT "C3'" "H3'" sing N N 91 DT "O3'" "HO3'" sing N N 92 DT "C2'" "C1'" sing N N 93 DT "C2'" "H2'" sing N N 94 DT "C2'" "H2''" sing N N 95 DT "C1'" N1 sing N N 96 DT "C1'" "H1'" sing N N 97 DT N1 C2 sing N N 98 DT N1 C6 sing N N 99 DT C2 O2 doub N N 100 DT C2 N3 sing N N 101 DT N3 C4 sing N N 102 DT N3 H3 sing N N 103 DT C4 O4 doub N N 104 DT C4 C5 sing N N 105 DT C5 C7 sing N N 106 DT C5 C6 doub N N 107 DT C7 H71 sing N N 108 DT C7 H72 sing N N 109 DT C7 H73 sing N N 110 DT C6 H6 sing N N 111 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2K8Z 'double helix' 2K8Z 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 B DG 3 1_555 -0.020 -0.088 -0.131 3.791 -8.671 -0.618 1 A_DC2:DG11_B A 2 ? B 11 ? 19 1 1 A DG 3 1_555 B DC 2 1_555 -0.029 -0.111 -0.032 -4.052 -3.411 -1.276 2 A_DG3:DC10_B A 3 ? B 10 ? 19 1 1 A DG 6 1_555 B DC 7 1_555 -0.120 -0.134 0.454 4.001 -1.150 -0.280 3 A_DG6:DC15_B A 6 ? B 15 ? 19 1 1 A DC 7 1_555 B DG 6 1_555 0.131 -0.174 0.379 1.948 -1.452 -0.607 4 A_DC7:DG14_B A 7 ? B 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 3 1_555 A DG 3 1_555 B DC 2 1_555 0.127 -0.623 3.351 -0.892 11.818 34.291 -2.656 -0.329 2.978 19.342 1.460 36.223 1 AA_DC2DG3:DC10DG11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DG 6 1_555 B DC 7 1_555 A DC 7 1_555 B DG 6 1_555 -0.012 -0.174 3.486 -0.253 -9.673 32.510 1.375 -0.024 3.397 -16.819 0.440 33.883 2 AA_DG6DC7:DG14DC15_BB A 6 ? B 15 ? A 7 ? B 14 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker DMX 1 'Bruker DMX' 800 Bruker DPX 2 'Bruker DPX' # _atom_sites.entry_id 2K8Z _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_