HEADER HYDROLASE 08-OCT-08 2K9C TITLE PARAMAGNETIC SHIFTS IN SOLID-STATE NMR OF PROTEINS TO ELICIT TITLE 2 STRUCTURAL INFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE METALLOELASTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN OF HUMAN MMP-12, UNP RESIDUES 112-263; COMPND 5 SYNONYM: HME, MATRIX METALLOPROTEINASE-12, MMP-12, MACROPHAGE COMPND 6 ELASTASE, ME; COMPND 7 EC: 3.4.24.65; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MMP12, HME; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21A KEYWDS MATRIX METALLOPROTEINASE, PSEUDOCONTACT SHIFT, PARAMAGNETIC NMR, KEYWDS 2 HYDROLASE, CALCIUM, EXTRACELLULAR MATRIX, GLYCOPROTEIN, METAL- KEYWDS 3 BINDING, METALLOPROTEASE, POLYMORPHISM, PROTEASE, SECRETED, ZINC, KEYWDS 4 ZYMOGEN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.BALAYSSAC,I.BERTINI,A.BHAUMIK,M.LELLI,C.LUCHINAT REVDAT 4 10-NOV-21 2K9C 1 REMARK SEQADV REVDAT 3 24-FEB-09 2K9C 1 VERSN REVDAT 2 25-NOV-08 2K9C 1 JRNL REVDAT 1 18-NOV-08 2K9C 0 JRNL AUTH S.BALAYSSAC,I.BERTINI,A.BHAUMIK,M.LELLI,C.LUCHINAT JRNL TITL PARAMAGNETIC SHIFTS IN SOLID-STATE NMR OF PROTEINS TO ELICIT JRNL TITL 2 STRUCTURAL INFORMATION JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 17284 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18988744 JRNL DOI 10.1073/PNAS.0708460105 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA PARAMAGNETICCYANA, CYANA PARAMAGNETICCYANA REMARK 3 AUTHORS : GUNTERT, P. (CYANA), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K9C COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000100839. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 280 REMARK 210 PH : 8.0 REMARK 210 IONIC STRENGTH : LOW REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 45MG/ML [U-100% 13C; U-100% 15N] REMARK 210 ZNMMP12; 45MG/ML [U-100% 13C; U- REMARK 210 100% 15N] COMMP12; 15 + 30MG/ML REMARK 210 [U-100% 13C; U-100% 15N] REMARK 210 CRYSTALLIZED MITURE OF 33% REMARK 210 LABELLED ZNMMP-12 DILUTED WITH REMARK 210 67% OF UNLABELED COMMP-12; 15 + REMARK 210 30MG/ML [U-100% 13C; U-100% 15N] REMARK 210 CRYSTALLIZED MITURE OF 33% REMARK 210 LABELLED COMMP-12 DILUTED WITH REMARK 210 67% OF UNLABELED ZNMMP-12 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D PDSD; 2D CHHC; 3D NCACX; 3D REMARK 210 NCOCX; 2D DARR REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 2000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING A COMBINATION OF REMARK 210 DISTANCE RESTRAINTS EXTRACTED FROM PDSD DARR, CHHC SPECTRA, REMARK 210 TALOS CALCULATED ANGLES RESTRAINTS AND PSEUDOCONTACT SHIFT DATA REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE1 HIS A 222 CO CO A 264 0.89 REMARK 500 CE1 HIS A 222 CO CO A 264 1.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 120 97.59 63.16 REMARK 500 1 PRO A 123 78.54 -69.79 REMARK 500 1 ASP A 124 -57.77 -124.98 REMARK 500 1 MET A 125 -169.70 -125.40 REMARK 500 1 PRO A 146 78.00 -69.75 REMARK 500 1 MET A 156 127.95 66.66 REMARK 500 1 ALA A 157 118.97 -175.90 REMARK 500 1 ASP A 158 -73.47 70.48 REMARK 500 1 HIS A 168 103.86 -48.72 REMARK 500 1 ASP A 170 -69.10 72.31 REMARK 500 1 ALA A 173 -53.99 -174.90 REMARK 500 1 PHE A 174 105.62 63.31 REMARK 500 1 LYS A 177 76.19 62.15 REMARK 500 1 LEU A 181 -72.58 -51.82 REMARK 500 1 PHE A 185 152.25 65.03 REMARK 500 1 PRO A 187 97.28 -69.83 REMARK 500 1 SER A 189 -69.43 72.12 REMARK 500 1 ILE A 191 152.37 65.36 REMARK 500 1 ASP A 198 91.87 61.05 REMARK 500 1 GLU A 199 -46.44 -151.70 REMARK 500 1 ASP A 200 23.56 -140.05 REMARK 500 1 GLU A 201 -46.09 -140.02 REMARK 500 1 PHE A 202 152.62 64.96 REMARK 500 1 LEU A 212 -168.47 51.80 REMARK 500 1 LEU A 226 32.82 -175.98 REMARK 500 1 HIS A 228 -71.19 -51.99 REMARK 500 1 SER A 229 -62.10 73.80 REMARK 500 1 ALA A 252 178.09 -55.91 REMARK 500 1 ASP A 253 -69.09 72.39 REMARK 500 1 SER A 260 61.81 63.62 REMARK 500 2 ASP A 124 -34.98 -179.20 REMARK 500 2 MET A 125 -169.68 -172.25 REMARK 500 2 PRO A 146 77.15 -69.70 REMARK 500 2 ALA A 157 -156.12 -87.37 REMARK 500 2 ASP A 158 170.09 -49.60 REMARK 500 2 ILE A 159 60.90 69.39 REMARK 500 2 HIS A 168 103.08 -48.10 REMARK 500 2 ASP A 170 -42.43 -147.80 REMARK 500 2 ASP A 171 -42.70 -146.62 REMARK 500 2 ALA A 173 178.18 57.67 REMARK 500 2 PHE A 174 -70.47 -179.16 REMARK 500 2 ASP A 175 117.99 -178.33 REMARK 500 2 LYS A 177 84.61 -173.61 REMARK 500 2 PHE A 185 -74.90 -179.39 REMARK 500 2 ILE A 191 48.78 -89.19 REMARK 500 2 ASP A 200 -173.99 -179.88 REMARK 500 2 GLU A 201 -171.19 -174.22 REMARK 500 2 TRP A 203 65.23 36.30 REMARK 500 2 SER A 207 42.61 -93.13 REMARK 500 2 LEU A 212 -67.67 72.86 REMARK 500 REMARK 500 THIS ENTRY HAS 685 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 264 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 222 ND1 REMARK 620 2 HIS A 222 NE2 57.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 264 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RMZ RELATED DB: PDB DBREF 2K9C A 112 263 UNP P39900 MMP12_HUMAN 112 263 SEQADV 2K9C ASP A 171 UNP P39900 PHE 171 ENGINEERED MUTATION SEQRES 1 A 152 HIS TYR ILE THR TYR ARG ILE ASN ASN TYR THR PRO ASP SEQRES 2 A 152 MET ASN ARG GLU ASP VAL ASP TYR ALA ILE ARG LYS ALA SEQRES 3 A 152 PHE GLN VAL TRP SER ASN VAL THR PRO LEU LYS PHE SER SEQRES 4 A 152 LYS ILE ASN THR GLY MET ALA ASP ILE LEU VAL VAL PHE SEQRES 5 A 152 ALA ARG GLY ALA HIS GLY ASP ASP HIS ALA PHE ASP GLY SEQRES 6 A 152 LYS GLY GLY ILE LEU ALA HIS ALA PHE GLY PRO GLY SER SEQRES 7 A 152 GLY ILE GLY GLY ASP ALA HIS PHE ASP GLU ASP GLU PHE SEQRES 8 A 152 TRP THR THR HIS SER GLY GLY THR ASN LEU PHE LEU THR SEQRES 9 A 152 ALA VAL HIS GLU ILE GLY HIS SER LEU GLY LEU GLY HIS SEQRES 10 A 152 SER SER ASP PRO LYS ALA VAL MET PHE PRO THR TYR LYS SEQRES 11 A 152 TYR VAL ASP ILE ASN THR PHE ARG LEU SER ALA ASP ASP SEQRES 12 A 152 ILE ARG GLY ILE GLN SER LEU TYR GLY HET CO A 264 1 HETNAM CO COBALT (II) ION FORMUL 2 CO CO 2+ HELIX 1 1 ASN A 126 ASN A 143 1 18 HELIX 2 2 LEU A 214 GLY A 225 1 12 HELIX 3 3 ASP A 244 PHE A 248 5 5 HELIX 4 4 ASP A 253 GLN A 259 1 7 SHEET 1 A 2 TRP A 203 THR A 204 0 SHEET 2 A 2 THR A 210 ASN A 211 1 O THR A 210 N THR A 204 LINK ND1 HIS A 222 CO CO A 264 1555 1555 2.15 LINK NE2 HIS A 222 CO CO A 264 1555 1555 2.32 SITE 1 AC1 3 ALA A 182 HIS A 183 HIS A 218 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1