HEADER METAL BINDING PROTEIN 13-OCT-08 2K9H TITLE THE HANTAVIRUS GLYCOPROTEIN G1 TAIL CONTAINS A DUAL CCHC-TYPE TITLE 2 CLASSICAL ZINC FINGERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANDES VIRUS; SOURCE 3 ORGANISM_TAXID: 46607; SOURCE 4 STRAIN: ANDES; SOURCE 5 GENE: AF028026; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS HANTAVIRUS, GLYCOPROTEIN, ZINC FINGER, CCHC, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.F.ESTRADA,D.M.BOUDREAUX,D.ZHONG,S.C.ST JEOR,R.N.DE GUZMAN REVDAT 4 16-MAR-22 2K9H 1 REMARK REVDAT 3 07-APR-09 2K9H 1 JRNL REVDAT 2 17-FEB-09 2K9H 1 JRNL REVDAT 1 27-JAN-09 2K9H 0 JRNL AUTH D.F.ESTRADA,D.M.BOUDREAUX,D.ZHONG,S.C.ST JEOR,R.N.DE GUZMAN JRNL TITL THE HANTAVIRUS GLYCOPROTEIN G1 TAIL CONTAINS DUAL CCHC-TYPE JRNL TITL 2 CLASSICAL ZINC FINGERS. JRNL REF J.BIOL.CHEM. V. 284 8654 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19179334 JRNL DOI 10.1074/JBC.M808081200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER AMBER 7 REMARK 3 AUTHORS : CASE, D.A. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K9H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000100844. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 70 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 10 MM SODIUM PHOSPHATE, 10 MM REMARK 210 SODIUM CHLORIDE, 1 MM DTT, 0.1 REMARK 210 MM ZINC ION, 1 MM [U-100% 15N] REMARK 210 PROTEIN, 90% H2O/10% D2O; 10 MM REMARK 210 SODIUM PHOSPHATE, 10 MM SODIUM REMARK 210 CHLORIDE, 1 MM DTT, 0.1 MM ZINC REMARK 210 ION, 1 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN, 100% D2O; 10 MM REMARK 210 SODIUM PHOSPHATE, 10 MM SODIUM REMARK 210 CHLORIDE, 1 MM DTT, 0.1 MM ZINC REMARK 210 ION, 1 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HNCO; 3D CBCA(CO)NH; 3D HNCACB; REMARK 210 3D HBHA(CO)NH; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, TOPSPIN, NMRVIEW, REMARK 210 NMRDRAW, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG A 65 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 7 ARG A 65 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 16 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 16 ARG A 99 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 19 ARG A 65 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 75 -43.20 -134.54 REMARK 500 1 ALA A 82 41.59 -78.32 REMARK 500 1 THR A 97 -16.44 -46.76 REMARK 500 2 TYR A 75 -42.99 -136.48 REMARK 500 2 MET A 77 16.71 58.14 REMARK 500 2 THR A 97 -10.96 -49.36 REMARK 500 3 TYR A 75 -45.69 -135.02 REMARK 500 3 MET A 77 17.05 57.72 REMARK 500 3 THR A 97 19.93 -54.86 REMARK 500 4 TYR A 75 -51.95 -131.11 REMARK 500 4 MET A 77 18.56 56.26 REMARK 500 4 THR A 97 17.09 -52.70 REMARK 500 5 SER A 45 -31.43 -150.24 REMARK 500 5 MET A 46 44.00 -78.55 REMARK 500 5 MET A 77 18.19 55.83 REMARK 500 5 THR A 97 -2.51 -49.20 REMARK 500 6 TYR A 75 -46.35 -134.25 REMARK 500 6 THR A 97 -14.52 -49.41 REMARK 500 7 HIS A 52 27.88 47.82 REMARK 500 7 TYR A 75 -47.53 -134.13 REMARK 500 7 MET A 77 15.55 58.12 REMARK 500 7 ALA A 82 43.53 -77.19 REMARK 500 8 VAL A 50 -70.27 -118.78 REMARK 500 8 TYR A 75 -37.33 -135.58 REMARK 500 8 THR A 97 10.04 -54.03 REMARK 500 9 VAL A 50 -72.55 -115.13 REMARK 500 9 TYR A 75 -45.09 -135.21 REMARK 500 9 THR A 97 1.60 -53.55 REMARK 500 10 TYR A 75 -38.35 -136.19 REMARK 500 10 MET A 77 18.35 57.68 REMARK 500 10 THR A 97 -18.15 -49.60 REMARK 500 11 VAL A 50 -62.08 -122.83 REMARK 500 11 TYR A 75 -45.34 -133.40 REMARK 500 11 ALA A 82 46.17 -77.59 REMARK 500 12 VAL A 50 -73.17 -112.77 REMARK 500 12 TYR A 75 -24.80 51.50 REMARK 500 12 MET A 77 11.21 59.39 REMARK 500 13 VAL A 50 -73.58 -112.96 REMARK 500 13 TYR A 75 -6.71 50.73 REMARK 500 13 ALA A 82 40.45 -76.11 REMARK 500 14 TYR A 75 -43.39 -136.43 REMARK 500 14 MET A 77 18.67 59.09 REMARK 500 14 THR A 97 0.59 -55.29 REMARK 500 15 VAL A 50 -71.51 -116.02 REMARK 500 15 TYR A 75 -42.61 -132.26 REMARK 500 15 THR A 97 5.11 -55.50 REMARK 500 16 TYR A 75 -40.85 53.42 REMARK 500 16 GLU A 81 -8.08 -53.63 REMARK 500 16 THR A 97 -16.34 -47.05 REMARK 500 17 TYR A 75 -28.76 52.78 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 13 TYR A 91 0.07 SIDE CHAIN REMARK 500 18 ARG A 65 0.11 SIDE CHAIN REMARK 500 20 TYR A 91 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 48 SG REMARK 620 2 CYS A 51 SG 105.3 REMARK 620 3 HIS A 64 ND1 111.7 115.1 REMARK 620 4 CYS A 68 SG 112.1 107.5 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 73 SG REMARK 620 2 CYS A 76 SG 105.0 REMARK 620 3 HIS A 90 NE2 111.1 109.0 REMARK 620 4 CYS A 94 SG 112.9 111.5 107.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 102 DBREF 2K9H A 43 99 UNP Q99BV0 Q99BV0_9VIRU 543 599 SEQRES 1 A 57 MET GLY SER MET VAL CYS ASP VAL CYS HIS HIS GLU CYS SEQRES 2 A 57 GLU THR ALA LYS GLU LEU GLU SER HIS ARG GLN SER CYS SEQRES 3 A 57 ILE ASN GLY GLN CYS PRO TYR CYS MET THR ILE THR GLU SEQRES 4 A 57 ALA THR GLU SER ALA LEU GLN ALA HIS TYR SER ILE CYS SEQRES 5 A 57 LYS LEU THR GLY ARG HET ZN A 101 1 HET ZN A 102 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 GLU A 60 ILE A 69 1 10 HELIX 2 2 THR A 83 SER A 92 1 10 HELIX 3 3 LYS A 95 ARG A 99 5 5 LINK SG CYS A 48 ZN ZN A 101 1555 1555 2.29 LINK SG CYS A 51 ZN ZN A 101 1555 1555 2.29 LINK ND1 HIS A 64 ZN ZN A 101 1555 1555 2.09 LINK SG CYS A 68 ZN ZN A 101 1555 1555 2.28 LINK SG CYS A 73 ZN ZN A 102 1555 1555 2.28 LINK SG CYS A 76 ZN ZN A 102 1555 1555 2.28 LINK NE2 HIS A 90 ZN ZN A 102 1555 1555 2.08 LINK SG CYS A 94 ZN ZN A 102 1555 1555 2.29 SITE 1 AC1 4 CYS A 48 VAL A 50 CYS A 51 HIS A 53 SITE 1 AC2 2 CYS A 73 THR A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1