HEADER TRANSCRIPTION 19-OCT-08 2K9M TITLE STRUCTURE OF THE CORE BINDING DOMAIN OF SIGMA54 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE SIGMA FACTOR RPON; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 69-198; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 GENE: RPON; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET21B3-2 KEYWDS CORE BINDING DOMAIN, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.HONG,D.WEMMER REVDAT 3 16-MAR-22 2K9M 1 REMARK REVDAT 2 30-JUN-09 2K9M 1 JRNL REVDAT 1 26-MAY-09 2K9M 0 JRNL AUTH E.HONG,M.DOUCLEFF,D.E.WEMMER JRNL TITL STRUCTURE OF THE RNA POLYMERASE CORE-BINDING DOMAIN OF JRNL TITL 2 SIGMA(54) REVEALS A LIKELY CONFORMATIONAL FRACTURE POINT JRNL REF J.MOL.BIOL. V. 390 70 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19426742 JRNL DOI 10.1016/J.JMB.2009.04.070 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K9M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000100849. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-100% 13C; U-100% 15N] REMARK 210 CORE BINDING DOMAIN, 90% H2O/10% REMARK 210 D2O; 0.6 MM [U-100% 15N] CORE REMARK 210 BINDING DOMAIN, 90% H2O/10% D2O; REMARK 210 0.6 MM [U-100% 13C; U-100% 15N] REMARK 210 CORE BINDING DOMAIN, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D C(CO)NH; 3D H(CCO) REMARK 210 NH; 3D HBHA(CO)NH; 3D 1H-15N REMARK 210 NOESY; 3D HCCH-TOCSY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY 3.114, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 99 46.91 -97.30 REMARK 500 1 GLU A 102 29.69 -79.73 REMARK 500 1 ASP A 143 -174.53 164.73 REMARK 500 1 ILE A 155 -72.04 -72.01 REMARK 500 1 LYS A 174 -169.19 179.34 REMARK 500 1 PHE A 190 66.18 -118.75 REMARK 500 1 SER A 195 144.26 -173.31 REMARK 500 2 TYR A 99 46.23 -97.94 REMARK 500 2 LEU A 137 163.79 -47.90 REMARK 500 2 ASP A 143 -170.61 164.08 REMARK 500 2 ILE A 155 -71.35 -72.40 REMARK 500 2 LEU A 187 -169.49 -115.20 REMARK 500 2 ARG A 188 152.81 179.66 REMARK 500 2 PHE A 190 67.83 37.05 REMARK 500 3 TYR A 99 45.20 -98.37 REMARK 500 3 LEU A 106 150.22 -48.05 REMARK 500 3 LEU A 137 163.82 -48.01 REMARK 500 3 ASP A 143 -173.37 165.59 REMARK 500 3 ILE A 155 -70.84 -72.81 REMARK 500 3 TYR A 156 79.60 -109.74 REMARK 500 3 LYS A 174 -169.74 -179.35 REMARK 500 4 TYR A 99 44.23 -92.58 REMARK 500 4 ASP A 143 -174.14 165.62 REMARK 500 4 ILE A 155 -71.30 -73.10 REMARK 500 4 TYR A 156 79.13 -109.55 REMARK 500 4 LEU A 187 -168.87 -115.36 REMARK 500 4 PHE A 190 66.19 36.78 REMARK 500 5 TYR A 99 40.53 -97.61 REMARK 500 5 ASP A 143 -176.41 164.26 REMARK 500 5 TYR A 156 79.60 -109.35 REMARK 500 5 LYS A 174 -169.08 -179.91 REMARK 500 5 LEU A 187 -168.75 -112.64 REMARK 500 5 ARG A 188 131.54 -175.56 REMARK 500 6 TYR A 99 44.61 -99.25 REMARK 500 6 LEU A 106 155.35 -49.87 REMARK 500 6 LEU A 137 172.05 -59.69 REMARK 500 6 ASP A 143 -174.57 167.29 REMARK 500 6 ILE A 155 -70.29 -75.81 REMARK 500 6 TYR A 156 79.46 -109.31 REMARK 500 6 LYS A 174 -178.34 -176.96 REMARK 500 7 LEU A 137 161.94 -46.95 REMARK 500 7 ASP A 143 -175.09 164.40 REMARK 500 7 ILE A 155 -71.27 -72.48 REMARK 500 7 PHE A 190 73.08 51.26 REMARK 500 7 SER A 193 108.07 64.11 REMARK 500 8 TYR A 99 47.03 -98.27 REMARK 500 8 GLU A 102 1.42 -69.66 REMARK 500 8 LEU A 137 164.06 -47.67 REMARK 500 8 ASP A 143 -174.52 163.77 REMARK 500 8 ILE A 155 -72.09 -72.25 REMARK 500 REMARK 500 THIS ENTRY HAS 134 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2K9L RELATED DB: PDB DBREF 2K9M A 69 198 UNP O66858 O66858_AQUAE 69 198 SEQRES 1 A 130 TYR THR PRO SER GLU LEU GLU GLU LEU GLN GLN ASN ILE SEQRES 2 A 130 LYS LEU GLU LEU GLU GLY LYS GLU GLN GLU LEU ALA LEU SEQRES 3 A 130 GLU LEU LEU ASN TYR LEU ASN GLU LYS GLY PHE LEU SER SEQRES 4 A 130 LYS SER VAL GLU GLU ILE SER ASP VAL LEU ARG CYS SER SEQRES 5 A 130 VAL GLU GLU LEU GLU LYS VAL ARG GLN LYS VAL LEU ARG SEQRES 6 A 130 LEU GLU PRO LEU GLY VAL CYS SER LYS ASP VAL TRP GLU SEQRES 7 A 130 PHE LEU GLU LEU GLN ILE GLU GLU ILE TYR PRO GLU GLU SEQRES 8 A 130 GLU GLU ILE LEU LYS LYS ALA LEU ARG ASP LEU LYS ARG SEQRES 9 A 130 GLY LYS LYS LEU LYS PRO GLU ILE LYS GLY LYS LEU SER SEQRES 10 A 130 ARG LEU ARG LEU PHE PRO LEU SER SER SER ALA GLU LYS HELIX 1 1 SER A 72 LEU A 85 1 14 HELIX 2 2 GLY A 87 LEU A 97 1 11 HELIX 3 3 SER A 109 LEU A 117 1 9 HELIX 4 4 SER A 120 ARG A 133 1 14 HELIX 5 5 TRP A 145 ILE A 155 1 11 HELIX 6 6 GLU A 159 GLY A 173 1 15 HELIX 7 7 LYS A 177 ARG A 186 1 10 CISPEP 1 GLU A 135 PRO A 136 1 0.01 CISPEP 2 GLU A 135 PRO A 136 2 -0.01 CISPEP 3 GLU A 135 PRO A 136 3 -0.04 CISPEP 4 GLU A 135 PRO A 136 4 0.04 CISPEP 5 GLU A 135 PRO A 136 5 -0.02 CISPEP 6 GLU A 135 PRO A 136 6 0.01 CISPEP 7 GLU A 135 PRO A 136 7 -0.06 CISPEP 8 GLU A 135 PRO A 136 8 0.07 CISPEP 9 GLU A 135 PRO A 136 9 -0.02 CISPEP 10 GLU A 135 PRO A 136 10 0.05 CISPEP 11 GLU A 135 PRO A 136 11 0.02 CISPEP 12 GLU A 135 PRO A 136 12 -0.04 CISPEP 13 GLU A 135 PRO A 136 13 -0.06 CISPEP 14 GLU A 135 PRO A 136 14 0.01 CISPEP 15 GLU A 135 PRO A 136 15 0.02 CISPEP 16 GLU A 135 PRO A 136 16 0.00 CISPEP 17 GLU A 135 PRO A 136 17 0.06 CISPEP 18 GLU A 135 PRO A 136 18 0.08 CISPEP 19 GLU A 135 PRO A 136 19 -0.01 CISPEP 20 GLU A 135 PRO A 136 20 0.00 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1