data_2KAM # _entry.id 2KAM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KAM pdb_00002kam 10.2210/pdb2kam/pdb RCSB RCSB100884 ? ? WWPDB D_1000100884 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 4 'Structure model' 1 3 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_conn 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 4 'Structure model' pdbx_entry_details 9 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KAM _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2008-11-11 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 1DTC PDB 'synthethic acetyl-delta-toxin peptide dissolved in CD3OH/H2O (2:1)' unspecified 2DTB PDB 'synthethic delta-toxin peptide dissolved in CD3OH/H2O (2:1)' unspecified 1DHL PDB 'delta-hemolysin (theoretical model)' unspecified 2DHL PDB 'delta-hemolysin (theoretical model)' unspecified 3DHL PDB 'delta-hemolysin (theoretical model)' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Loureiro-Ferreira, N.' 1 ? 'Rodrigues, J.' 2 ? 'Brito, R.M.M.' 3 ? # _citation.id primary _citation.title 'NMR solution structure of delta-toxin in membrane-mimetic environments' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Loureiro-Ferreira, N.' 1 ? primary 'Rodrigues, J.' 2 ? primary 'Birkbeck, T.H.' 3 ? primary 'Brito, R.M.M.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description Delta-hemolysin _entity.formula_weight 3010.546 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Delta-lysin, Delta-toxin' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(FME)AQDIISTIGDLVKWIIDTVNKFTKK' _entity_poly.pdbx_seq_one_letter_code_can MAQDIISTIGDLVKWIIDTVNKFTKK _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 FME n 1 2 ALA n 1 3 GLN n 1 4 ASP n 1 5 ILE n 1 6 ILE n 1 7 SER n 1 8 THR n 1 9 ILE n 1 10 GLY n 1 11 ASP n 1 12 LEU n 1 13 VAL n 1 14 LYS n 1 15 TRP n 1 16 ILE n 1 17 ILE n 1 18 ASP n 1 19 THR n 1 20 VAL n 1 21 ASN n 1 22 LYS n 1 23 PHE n 1 24 THR n 1 25 LYS n 1 26 LYS n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Staphylococcus aureus' _entity_src_nat.pdbx_ncbi_taxonomy_id 1280 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain 'NCTC 10345' _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 FME 'L-peptide linking' n N-FORMYLMETHIONINE ? 'C6 H11 N O3 S' 177.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 FME 1 1 1 FME FME A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 LYS 26 26 26 LYS LYS A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KAM _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KAM _struct.title 'NMR structure of delta-toxin from Staphylococcus aureus in CD3OH' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KAM _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text 'Cytolytic, Cytolysis, Formylation, Hemolysis, Membrane, Secreted, Toxin, Transmembrane' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HLD_STAAU _struct_ref.pdbx_db_accession P0C1V1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MAQDIISTIGDLVKWIIDTVNKFTKK _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2KAM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 26 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0C1V1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 26 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 26 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id FME _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 1 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id THR _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 24 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id FME _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 1 _struct_conf.end_auth_comp_id THR _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 24 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id FME _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id ALA _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id FME _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ALA _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.326 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id FME _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 1 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id . _pdbx_modification_feature.modified_residue_label_asym_id . _pdbx_modification_feature.modified_residue_label_seq_id . _pdbx_modification_feature.modified_residue_label_alt_id . _pdbx_modification_feature.auth_comp_id FME _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 1 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id . _pdbx_modification_feature.modified_residue_auth_asym_id . _pdbx_modification_feature.modified_residue_auth_seq_id . _pdbx_modification_feature.modified_residue_PDB_ins_code . _pdbx_modification_feature.modified_residue_symmetry . _pdbx_modification_feature.comp_id_linking_atom . _pdbx_modification_feature.modified_residue_id_linking_atom . _pdbx_modification_feature.modified_residue_id MET _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id FME _pdbx_modification_feature.type Formylation _pdbx_modification_feature.category 'Named protein modification' # _pdbx_entry_details.entry_id 2KAM _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 O A TRP 15 ? ? HG1 A THR 19 ? ? 1.55 2 14 O A GLN 3 ? ? H A SER 7 ? ? 1.59 3 20 O1 A FME 1 ? ? H A ALA 2 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 24 ? ? -99.84 33.35 2 2 THR A 24 ? ? 62.52 62.10 3 4 LYS A 25 ? ? 35.55 -143.46 4 5 THR A 24 ? ? -84.26 30.64 5 6 THR A 24 ? ? -95.75 30.80 6 8 THR A 24 ? ? -79.07 24.18 7 10 THR A 24 ? ? 72.79 70.54 8 11 THR A 24 ? ? -94.01 36.33 9 12 THR A 24 ? ? -72.71 21.88 10 14 THR A 24 ? ? -167.50 78.55 11 15 THR A 24 ? ? -94.59 32.77 12 17 LYS A 22 ? ? -91.56 34.72 13 17 THR A 24 ? ? -157.89 33.45 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id FME _pdbx_struct_mod_residue.label_seq_id 1 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id FME _pdbx_struct_mod_residue.auth_seq_id 1 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details N-FORMYLMETHIONINE # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KAM _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KAM _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.contents '3 mM delta-toxin, methanol' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system methanol # _pdbx_nmr_exptl_sample.component delta-toxin _pdbx_nmr_exptl_sample.concentration 3 _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 3 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D DQF-COSY' 1 2 1 '2D 1H-1H TOCSY' 1 3 1 '2D 1H-1H NOESY' # _pdbx_nmr_details.entry_id 2KAM _pdbx_nmr_details.text 'The structure of delta-toxin determined in CD3OH. A combination of NOE distance restraints and coupling constants were used.' # _pdbx_nmr_refine.entry_id 2KAM _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Accelrys Software Inc.' 'chemical shift assignment' Felix 95.0 1 'Accelrys Software Inc.' 'peak picking' Felix 95.0 2 'Accelrys Software Inc.' 'data analysis' Felix 95.0 3 'Accelrys Software Inc.' processing Felix 95.0 4 Varian collection VNMR 6.1B 5 Varian processing VNMR 6.1B 6 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' 2.16.0 7 ? refinement 'X-PLOR NIH' 2.16.0 8 'Laskowski and MacArthur' 'data analysis' ProcheckNMR 3.5.4 9 'Accelrys Software Inc.' 'fme residue modelling' 'Insight II' 95.0 10 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 FME N N N N 47 FME CN C N N 48 FME O1 O N N 49 FME CA C N S 50 FME CB C N N 51 FME CG C N N 52 FME SD S N N 53 FME CE C N N 54 FME C C N N 55 FME O O N N 56 FME OXT O N N 57 FME H H N N 58 FME HCN H N N 59 FME HA H N N 60 FME HB2 H N N 61 FME HB3 H N N 62 FME HG2 H N N 63 FME HG3 H N N 64 FME HE1 H N N 65 FME HE2 H N N 66 FME HE3 H N N 67 FME HXT H N N 68 GLN N N N N 69 GLN CA C N S 70 GLN C C N N 71 GLN O O N N 72 GLN CB C N N 73 GLN CG C N N 74 GLN CD C N N 75 GLN OE1 O N N 76 GLN NE2 N N N 77 GLN OXT O N N 78 GLN H H N N 79 GLN H2 H N N 80 GLN HA H N N 81 GLN HB2 H N N 82 GLN HB3 H N N 83 GLN HG2 H N N 84 GLN HG3 H N N 85 GLN HE21 H N N 86 GLN HE22 H N N 87 GLN HXT H N N 88 GLY N N N N 89 GLY CA C N N 90 GLY C C N N 91 GLY O O N N 92 GLY OXT O N N 93 GLY H H N N 94 GLY H2 H N N 95 GLY HA2 H N N 96 GLY HA3 H N N 97 GLY HXT H N N 98 ILE N N N N 99 ILE CA C N S 100 ILE C C N N 101 ILE O O N N 102 ILE CB C N S 103 ILE CG1 C N N 104 ILE CG2 C N N 105 ILE CD1 C N N 106 ILE OXT O N N 107 ILE H H N N 108 ILE H2 H N N 109 ILE HA H N N 110 ILE HB H N N 111 ILE HG12 H N N 112 ILE HG13 H N N 113 ILE HG21 H N N 114 ILE HG22 H N N 115 ILE HG23 H N N 116 ILE HD11 H N N 117 ILE HD12 H N N 118 ILE HD13 H N N 119 ILE HXT H N N 120 LEU N N N N 121 LEU CA C N S 122 LEU C C N N 123 LEU O O N N 124 LEU CB C N N 125 LEU CG C N N 126 LEU CD1 C N N 127 LEU CD2 C N N 128 LEU OXT O N N 129 LEU H H N N 130 LEU H2 H N N 131 LEU HA H N N 132 LEU HB2 H N N 133 LEU HB3 H N N 134 LEU HG H N N 135 LEU HD11 H N N 136 LEU HD12 H N N 137 LEU HD13 H N N 138 LEU HD21 H N N 139 LEU HD22 H N N 140 LEU HD23 H N N 141 LEU HXT H N N 142 LYS N N N N 143 LYS CA C N S 144 LYS C C N N 145 LYS O O N N 146 LYS CB C N N 147 LYS CG C N N 148 LYS CD C N N 149 LYS CE C N N 150 LYS NZ N N N 151 LYS OXT O N N 152 LYS H H N N 153 LYS H2 H N N 154 LYS HA H N N 155 LYS HB2 H N N 156 LYS HB3 H N N 157 LYS HG2 H N N 158 LYS HG3 H N N 159 LYS HD2 H N N 160 LYS HD3 H N N 161 LYS HE2 H N N 162 LYS HE3 H N N 163 LYS HZ1 H N N 164 LYS HZ2 H N N 165 LYS HZ3 H N N 166 LYS HXT H N N 167 PHE N N N N 168 PHE CA C N S 169 PHE C C N N 170 PHE O O N N 171 PHE CB C N N 172 PHE CG C Y N 173 PHE CD1 C Y N 174 PHE CD2 C Y N 175 PHE CE1 C Y N 176 PHE CE2 C Y N 177 PHE CZ C Y N 178 PHE OXT O N N 179 PHE H H N N 180 PHE H2 H N N 181 PHE HA H N N 182 PHE HB2 H N N 183 PHE HB3 H N N 184 PHE HD1 H N N 185 PHE HD2 H N N 186 PHE HE1 H N N 187 PHE HE2 H N N 188 PHE HZ H N N 189 PHE HXT H N N 190 SER N N N N 191 SER CA C N S 192 SER C C N N 193 SER O O N N 194 SER CB C N N 195 SER OG O N N 196 SER OXT O N N 197 SER H H N N 198 SER H2 H N N 199 SER HA H N N 200 SER HB2 H N N 201 SER HB3 H N N 202 SER HG H N N 203 SER HXT H N N 204 THR N N N N 205 THR CA C N S 206 THR C C N N 207 THR O O N N 208 THR CB C N R 209 THR OG1 O N N 210 THR CG2 C N N 211 THR OXT O N N 212 THR H H N N 213 THR H2 H N N 214 THR HA H N N 215 THR HB H N N 216 THR HG1 H N N 217 THR HG21 H N N 218 THR HG22 H N N 219 THR HG23 H N N 220 THR HXT H N N 221 TRP N N N N 222 TRP CA C N S 223 TRP C C N N 224 TRP O O N N 225 TRP CB C N N 226 TRP CG C Y N 227 TRP CD1 C Y N 228 TRP CD2 C Y N 229 TRP NE1 N Y N 230 TRP CE2 C Y N 231 TRP CE3 C Y N 232 TRP CZ2 C Y N 233 TRP CZ3 C Y N 234 TRP CH2 C Y N 235 TRP OXT O N N 236 TRP H H N N 237 TRP H2 H N N 238 TRP HA H N N 239 TRP HB2 H N N 240 TRP HB3 H N N 241 TRP HD1 H N N 242 TRP HE1 H N N 243 TRP HE3 H N N 244 TRP HZ2 H N N 245 TRP HZ3 H N N 246 TRP HH2 H N N 247 TRP HXT H N N 248 VAL N N N N 249 VAL CA C N S 250 VAL C C N N 251 VAL O O N N 252 VAL CB C N N 253 VAL CG1 C N N 254 VAL CG2 C N N 255 VAL OXT O N N 256 VAL H H N N 257 VAL H2 H N N 258 VAL HA H N N 259 VAL HB H N N 260 VAL HG11 H N N 261 VAL HG12 H N N 262 VAL HG13 H N N 263 VAL HG21 H N N 264 VAL HG22 H N N 265 VAL HG23 H N N 266 VAL HXT H N N 267 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 FME N CN sing N N 44 FME N CA sing N N 45 FME N H sing N N 46 FME CN O1 doub N N 47 FME CN HCN sing N N 48 FME CA CB sing N N 49 FME CA C sing N N 50 FME CA HA sing N N 51 FME CB CG sing N N 52 FME CB HB2 sing N N 53 FME CB HB3 sing N N 54 FME CG SD sing N N 55 FME CG HG2 sing N N 56 FME CG HG3 sing N N 57 FME SD CE sing N N 58 FME CE HE1 sing N N 59 FME CE HE2 sing N N 60 FME CE HE3 sing N N 61 FME C O doub N N 62 FME C OXT sing N N 63 FME OXT HXT sing N N 64 GLN N CA sing N N 65 GLN N H sing N N 66 GLN N H2 sing N N 67 GLN CA C sing N N 68 GLN CA CB sing N N 69 GLN CA HA sing N N 70 GLN C O doub N N 71 GLN C OXT sing N N 72 GLN CB CG sing N N 73 GLN CB HB2 sing N N 74 GLN CB HB3 sing N N 75 GLN CG CD sing N N 76 GLN CG HG2 sing N N 77 GLN CG HG3 sing N N 78 GLN CD OE1 doub N N 79 GLN CD NE2 sing N N 80 GLN NE2 HE21 sing N N 81 GLN NE2 HE22 sing N N 82 GLN OXT HXT sing N N 83 GLY N CA sing N N 84 GLY N H sing N N 85 GLY N H2 sing N N 86 GLY CA C sing N N 87 GLY CA HA2 sing N N 88 GLY CA HA3 sing N N 89 GLY C O doub N N 90 GLY C OXT sing N N 91 GLY OXT HXT sing N N 92 ILE N CA sing N N 93 ILE N H sing N N 94 ILE N H2 sing N N 95 ILE CA C sing N N 96 ILE CA CB sing N N 97 ILE CA HA sing N N 98 ILE C O doub N N 99 ILE C OXT sing N N 100 ILE CB CG1 sing N N 101 ILE CB CG2 sing N N 102 ILE CB HB sing N N 103 ILE CG1 CD1 sing N N 104 ILE CG1 HG12 sing N N 105 ILE CG1 HG13 sing N N 106 ILE CG2 HG21 sing N N 107 ILE CG2 HG22 sing N N 108 ILE CG2 HG23 sing N N 109 ILE CD1 HD11 sing N N 110 ILE CD1 HD12 sing N N 111 ILE CD1 HD13 sing N N 112 ILE OXT HXT sing N N 113 LEU N CA sing N N 114 LEU N H sing N N 115 LEU N H2 sing N N 116 LEU CA C sing N N 117 LEU CA CB sing N N 118 LEU CA HA sing N N 119 LEU C O doub N N 120 LEU C OXT sing N N 121 LEU CB CG sing N N 122 LEU CB HB2 sing N N 123 LEU CB HB3 sing N N 124 LEU CG CD1 sing N N 125 LEU CG CD2 sing N N 126 LEU CG HG sing N N 127 LEU CD1 HD11 sing N N 128 LEU CD1 HD12 sing N N 129 LEU CD1 HD13 sing N N 130 LEU CD2 HD21 sing N N 131 LEU CD2 HD22 sing N N 132 LEU CD2 HD23 sing N N 133 LEU OXT HXT sing N N 134 LYS N CA sing N N 135 LYS N H sing N N 136 LYS N H2 sing N N 137 LYS CA C sing N N 138 LYS CA CB sing N N 139 LYS CA HA sing N N 140 LYS C O doub N N 141 LYS C OXT sing N N 142 LYS CB CG sing N N 143 LYS CB HB2 sing N N 144 LYS CB HB3 sing N N 145 LYS CG CD sing N N 146 LYS CG HG2 sing N N 147 LYS CG HG3 sing N N 148 LYS CD CE sing N N 149 LYS CD HD2 sing N N 150 LYS CD HD3 sing N N 151 LYS CE NZ sing N N 152 LYS CE HE2 sing N N 153 LYS CE HE3 sing N N 154 LYS NZ HZ1 sing N N 155 LYS NZ HZ2 sing N N 156 LYS NZ HZ3 sing N N 157 LYS OXT HXT sing N N 158 PHE N CA sing N N 159 PHE N H sing N N 160 PHE N H2 sing N N 161 PHE CA C sing N N 162 PHE CA CB sing N N 163 PHE CA HA sing N N 164 PHE C O doub N N 165 PHE C OXT sing N N 166 PHE CB CG sing N N 167 PHE CB HB2 sing N N 168 PHE CB HB3 sing N N 169 PHE CG CD1 doub Y N 170 PHE CG CD2 sing Y N 171 PHE CD1 CE1 sing Y N 172 PHE CD1 HD1 sing N N 173 PHE CD2 CE2 doub Y N 174 PHE CD2 HD2 sing N N 175 PHE CE1 CZ doub Y N 176 PHE CE1 HE1 sing N N 177 PHE CE2 CZ sing Y N 178 PHE CE2 HE2 sing N N 179 PHE CZ HZ sing N N 180 PHE OXT HXT sing N N 181 SER N CA sing N N 182 SER N H sing N N 183 SER N H2 sing N N 184 SER CA C sing N N 185 SER CA CB sing N N 186 SER CA HA sing N N 187 SER C O doub N N 188 SER C OXT sing N N 189 SER CB OG sing N N 190 SER CB HB2 sing N N 191 SER CB HB3 sing N N 192 SER OG HG sing N N 193 SER OXT HXT sing N N 194 THR N CA sing N N 195 THR N H sing N N 196 THR N H2 sing N N 197 THR CA C sing N N 198 THR CA CB sing N N 199 THR CA HA sing N N 200 THR C O doub N N 201 THR C OXT sing N N 202 THR CB OG1 sing N N 203 THR CB CG2 sing N N 204 THR CB HB sing N N 205 THR OG1 HG1 sing N N 206 THR CG2 HG21 sing N N 207 THR CG2 HG22 sing N N 208 THR CG2 HG23 sing N N 209 THR OXT HXT sing N N 210 TRP N CA sing N N 211 TRP N H sing N N 212 TRP N H2 sing N N 213 TRP CA C sing N N 214 TRP CA CB sing N N 215 TRP CA HA sing N N 216 TRP C O doub N N 217 TRP C OXT sing N N 218 TRP CB CG sing N N 219 TRP CB HB2 sing N N 220 TRP CB HB3 sing N N 221 TRP CG CD1 doub Y N 222 TRP CG CD2 sing Y N 223 TRP CD1 NE1 sing Y N 224 TRP CD1 HD1 sing N N 225 TRP CD2 CE2 doub Y N 226 TRP CD2 CE3 sing Y N 227 TRP NE1 CE2 sing Y N 228 TRP NE1 HE1 sing N N 229 TRP CE2 CZ2 sing Y N 230 TRP CE3 CZ3 doub Y N 231 TRP CE3 HE3 sing N N 232 TRP CZ2 CH2 doub Y N 233 TRP CZ2 HZ2 sing N N 234 TRP CZ3 CH2 sing Y N 235 TRP CZ3 HZ3 sing N N 236 TRP CH2 HH2 sing N N 237 TRP OXT HXT sing N N 238 VAL N CA sing N N 239 VAL N H sing N N 240 VAL N H2 sing N N 241 VAL CA C sing N N 242 VAL CA CB sing N N 243 VAL CA HA sing N N 244 VAL C O doub N N 245 VAL C OXT sing N N 246 VAL CB CG1 sing N N 247 VAL CB CG2 sing N N 248 VAL CB HB sing N N 249 VAL CG1 HG11 sing N N 250 VAL CG1 HG12 sing N N 251 VAL CG1 HG13 sing N N 252 VAL CG2 HG21 sing N N 253 VAL CG2 HG22 sing N N 254 VAL CG2 HG23 sing N N 255 VAL OXT HXT sing N N 256 # _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Varian INOVA' # _atom_sites.entry_id 2KAM _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ #