HEADER CELL ADHESION 28-NOV-08 2KBG TITLE SOLUTION STRUCTURE OF THE SECOND FIBRONECTIN TYPE-III MODULE OF NCAM2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAL CELL ADHESION MOLECULE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN TYPE-III DOMAIN 2; COMPND 5 SYNONYM: N-CAM 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCAM2; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: KM71H; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PPICZALPHC KEYWDS CELL ADHESION MOLECULE, FIBRONECTIN TYPE III MODULE, NCAM2, BETA- KEYWDS 2 SHEET SANDWICH, CELL MEMBRANE, GLYCOPROTEIN, IMMUNOGLOBULIN DOMAIN, KEYWDS 3 MEMBRANE, PHOSPHOPROTEIN, TRANSMEMBRANE, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.K.RASMUSSEN,K.TEILUM,N.KULAHIN,O.CLAUSEN,V.BEREZIN,E.BOCK, AUTHOR 2 P.S.WALMOD,F.M.POULSEN REVDAT 2 16-MAR-22 2KBG 1 REMARK SEQADV REVDAT 1 01-DEC-09 2KBG 0 JRNL AUTH K.K.RASMUSSEN,K.TEILUM,N.KULAHIN,O.CLAUSEN,V.BEREZIN,E.BOCK, JRNL AUTH 2 P.S.WALMOD,F.M.POULSEN JRNL TITL SOLUTION STRUCTURE OF THE SECOND FIBRONECTIN TYPE-III MODULE JRNL TITL 2 OF NCAM2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.19, X-PLOR NIH 2.19 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA, CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA, CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KBG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000100912. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.4MM [U-13C; U-15N] FNIII2 OF REMARK 210 NCAM2, 20MM SODIUM PHOSPHATE (PH REMARK 210 6.5), 0.02% SODIUM AZIDE, 90% REMARK 210 H2O, 10% D2O, 90% H2O/10% D2O; REMARK 210 1.4MM [U-13C; U-15N] FNIII2 OF REMARK 210 NCAM2, 20MM SODIUM PHOSPHATE (PH REMARK 210 6.5), 0.02% SODIUM AZIDE, 100% REMARK 210 D2O, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HCACO; 3D HN(CO)CA; 3D REMARK 210 H(CCO)NH; 3D C(CO)NH; 3D 1H-15N REMARK 210 TOCSY; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOASSIGN 2.3.0, CYANA 2.1, REMARK 210 NMRPIPE, TALOS, VNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLU A -5 REMARK 465 ALA A -4 REMARK 465 GLU A -3 REMARK 465 ALA A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 HIS A 103 REMARK 465 HIS A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 HIS A 107 REMARK 465 HIS A 108 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 3 -164.17 -101.20 REMARK 500 1 PRO A 5 171.01 -59.96 REMARK 500 1 PRO A 6 164.75 -39.21 REMARK 500 1 SER A 7 48.97 -163.74 REMARK 500 1 SER A 13 -87.77 -58.12 REMARK 500 1 LYS A 24 105.56 -36.98 REMARK 500 1 GLU A 45 54.91 -114.77 REMARK 500 1 HIS A 59 152.93 179.80 REMARK 500 1 HIS A 64 62.39 71.04 REMARK 500 1 GLN A 66 152.22 -36.35 REMARK 500 1 ASN A 79 -164.92 -111.60 REMARK 500 1 GLU A 85 57.73 34.63 REMARK 500 1 PHE A 91 129.58 -171.52 REMARK 500 1 LYS A 96 131.47 -37.89 REMARK 500 1 ILE A 100 16.54 39.36 REMARK 500 1 LYS A 101 -72.81 -86.99 REMARK 500 2 GLU A 2 84.84 34.84 REMARK 500 2 PRO A 6 175.19 -39.79 REMARK 500 2 SER A 7 39.85 -160.11 REMARK 500 2 LYS A 24 105.46 -34.57 REMARK 500 2 ASP A 27 172.51 58.05 REMARK 500 2 GLU A 45 51.46 -149.03 REMARK 500 2 HIS A 64 70.70 79.42 REMARK 500 2 GLN A 66 140.98 -38.10 REMARK 500 2 ASN A 98 -75.46 -80.73 REMARK 500 2 ILE A 99 -48.43 -151.70 REMARK 500 2 ILE A 100 152.76 -44.88 REMARK 500 2 LYS A 101 175.74 -51.15 REMARK 500 3 GLU A 2 86.75 -25.41 REMARK 500 3 PRO A 3 -164.43 -101.93 REMARK 500 3 PRO A 5 162.76 -36.10 REMARK 500 3 PRO A 6 164.38 -37.38 REMARK 500 3 SER A 7 53.15 -152.57 REMARK 500 3 PRO A 12 104.63 -50.02 REMARK 500 3 LYS A 24 105.20 -47.16 REMARK 500 3 ASP A 26 -9.47 -51.16 REMARK 500 3 ASP A 27 131.54 64.83 REMARK 500 3 GLU A 45 16.21 -144.74 REMARK 500 3 HIS A 64 68.60 73.23 REMARK 500 3 GLN A 66 141.10 -36.16 REMARK 500 3 ASN A 79 -165.71 -119.07 REMARK 500 3 GLU A 85 98.03 -12.60 REMARK 500 3 LYS A 96 131.60 -39.71 REMARK 500 3 ASN A 98 -77.99 -117.88 REMARK 500 3 LYS A 101 167.81 73.90 REMARK 500 4 GLU A 2 92.13 -27.90 REMARK 500 4 PRO A 3 -164.02 -101.36 REMARK 500 4 PRO A 5 170.49 -38.50 REMARK 500 4 SER A 13 -173.57 -58.40 REMARK 500 4 LYS A 24 105.69 -44.62 REMARK 500 REMARK 500 THIS ENTRY HAS 268 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KBG A 1 102 UNP O15394 NCAM2_HUMAN 592 693 SEQADV 2KBG GLU A -5 UNP O15394 EXPRESSION TAG SEQADV 2KBG ALA A -4 UNP O15394 EXPRESSION TAG SEQADV 2KBG GLU A -3 UNP O15394 EXPRESSION TAG SEQADV 2KBG ALA A -2 UNP O15394 EXPRESSION TAG SEQADV 2KBG SER A -1 UNP O15394 EXPRESSION TAG SEQADV 2KBG MET A 0 UNP O15394 EXPRESSION TAG SEQADV 2KBG HIS A 103 UNP O15394 EXPRESSION TAG SEQADV 2KBG HIS A 104 UNP O15394 EXPRESSION TAG SEQADV 2KBG HIS A 105 UNP O15394 EXPRESSION TAG SEQADV 2KBG HIS A 106 UNP O15394 EXPRESSION TAG SEQADV 2KBG HIS A 107 UNP O15394 EXPRESSION TAG SEQADV 2KBG HIS A 108 UNP O15394 EXPRESSION TAG SEQRES 1 A 114 GLU ALA GLU ALA SER MET ARG GLU PRO SER PRO PRO SER SEQRES 2 A 114 ILE HIS GLY GLN PRO SER SER GLY LYS SER PHE LYS LEU SEQRES 3 A 114 SER ILE THR LYS GLN ASP ASP GLY GLY ALA PRO ILE LEU SEQRES 4 A 114 GLU TYR ILE VAL LYS TYR ARG SER LYS ASP LYS GLU ASP SEQRES 5 A 114 GLN TRP LEU GLU LYS LYS VAL GLN GLY ASN LYS ASP HIS SEQRES 6 A 114 ILE ILE LEU GLU HIS LEU GLN TRP THR MET GLY TYR GLU SEQRES 7 A 114 VAL GLN ILE THR ALA ALA ASN ARG LEU GLY TYR SER GLU SEQRES 8 A 114 PRO THR VAL TYR GLU PHE SER MET PRO PRO LYS PRO ASN SEQRES 9 A 114 ILE ILE LYS ASP HIS HIS HIS HIS HIS HIS SHEET 1 A 3 ILE A 8 HIS A 9 0 SHEET 2 A 3 PHE A 18 ILE A 22 -1 O SER A 21 N HIS A 9 SHEET 3 A 3 ILE A 60 LEU A 62 -1 O ILE A 60 N LEU A 20 SHEET 1 B 4 LEU A 49 GLN A 54 0 SHEET 2 B 4 GLU A 34 SER A 41 -1 N VAL A 37 O LYS A 51 SHEET 3 B 4 TYR A 71 ALA A 78 -1 O THR A 76 N ILE A 36 SHEET 4 B 4 SER A 84 PHE A 91 -1 O TYR A 89 N VAL A 73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1