HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 03-DEC-08 2KBN TITLE SOLUTION NMR STRUCTURE OF THE OB DOMAIN (RESIDUES 67-166) OF MM0293 TITLE 2 FROM METHANOSARCINA MAZEI. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET MAR214A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 67-166; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA MAZEI; SOURCE 3 ORGANISM_COMMON: METHANOSARCINA FRISIA; SOURCE 4 ORGANISM_TAXID: 2209; SOURCE 5 STRAIN: GOE1; SOURCE 6 GENE: MM0293, MM_0293; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21-23C KEYWDS NUCLEIC ACID BINDING PROTEIN, BETA BARREL, STRUCTURAL GENOMICS, PSI- KEYWDS 2 2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,K.DING,M.MAGLIQUI,M.JIANG,C.CICCOSANTI,R.XIAO,J.LUI, AUTHOR 2 J.K.EVERETT,G.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE,M.A.KENNEDY, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 14-JUN-23 2KBN 1 REMARK REVDAT 2 19-FEB-20 2KBN 1 REMARK REVDAT 1 07-JUL-09 2KBN 0 JRNL AUTH M.A.KENNEDY,T.A.RAMELOT,K.DING,M.MAGLIQUI,M.JIANG, JRNL AUTH 2 C.CICCOSANTI,R.XIAO,J.LUI,J.K.EVERETT,G.SWAPNA,T.B.ACTON, JRNL AUTH 3 B.ROST,G.T.MONTELIONE JRNL TITL NMR STRUCTURE OF THE OB DOMAIN OF MM0293 FROM THE ARCHEA JRNL TITL 2 METHANOSARCINA MAZEI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, CNS 1.2, X-PLOR NIH 2.2.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AUTOSTRUCTURE AND CYANA WERE USED TO REMARK 3 AUTOMATICALLY ASSIGN NOE CROSSPEAKS. XPLOR-NIH AND CNS WERE USED REMARK 3 TO DO HYDROGEN BOND REFINEMENT AND REFINEMENT IN THE PRESENCE OF REMARK 3 WATER. REMARK 4 REMARK 4 2KBN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000100919. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : .1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-100% 13C; U-100% 15N] REMARK 210 OB DOMAIN-1, 20 MM MES-2, 100 MM REMARK 210 SODIUM CHLORIDE-3, 10 MM DTT-4, REMARK 210 5 MM CALCIUM CHLORIDE-5, .02 % REMARK 210 SODIUM AZIDE-6, 95% H2O/5% D2O; REMARK 210 1.2 MM [U-5% 13C; U-99% 15N] OB REMARK 210 DOMAIN-7, 20 MM MES-8, 100 MM REMARK 210 SODIUM CHLORIDE-9, 10 MM DTT-10, REMARK 210 5 MM CALCIUM CHLORIDE-11, .02 % REMARK 210 SODIUM AZIDE-12, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 H(CCO)NH; 3D C(CO)NH; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 2D 1H- REMARK 210 15N HSQC; 2D 1H-13C HSQC; 4D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.113, AUTOASSIGN 2.3.0, REMARK 210 AUTOSTRUCTURE 2.2.1, CYANA 2.1, REMARK 210 PSVS 1.3 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 25 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 32 H SER A 34 1.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 18 178.34 178.37 REMARK 500 1 ILE A 25 -66.55 -96.89 REMARK 500 1 SER A 36 -62.34 -92.16 REMARK 500 1 ASN A 78 -123.55 41.15 REMARK 500 1 GLU A 103 -12.58 63.28 REMARK 500 2 VAL A 12 17.24 -153.94 REMARK 500 2 ASN A 30 -41.06 -133.25 REMARK 500 2 THR A 31 48.75 39.42 REMARK 500 2 GLU A 33 -47.07 -176.70 REMARK 500 2 SER A 36 -74.91 -73.15 REMARK 500 2 ASP A 43 143.56 -172.98 REMARK 500 2 LYS A 54 -9.18 -52.84 REMARK 500 2 ASN A 78 -141.93 43.41 REMARK 500 2 SER A 95 29.63 -77.27 REMARK 500 2 HIS A 104 -82.64 -88.73 REMARK 500 3 VAL A 12 10.25 -146.55 REMARK 500 3 GLN A 16 141.29 -173.45 REMARK 500 3 SER A 34 -43.01 84.60 REMARK 500 3 LYS A 87 164.79 -44.30 REMARK 500 3 ASN A 88 -29.84 72.15 REMARK 500 3 HIS A 105 -120.45 53.34 REMARK 500 4 ALA A 18 -175.10 -179.90 REMARK 500 4 SER A 36 -60.89 -98.91 REMARK 500 4 ALA A 56 -91.41 -151.03 REMARK 500 4 GLU A 57 70.60 179.65 REMARK 500 4 SER A 71 71.57 53.58 REMARK 500 4 ASN A 78 -134.38 51.48 REMARK 500 4 GLU A 103 40.38 31.66 REMARK 500 4 HIS A 105 90.53 41.13 REMARK 500 4 HIS A 106 86.96 -153.85 REMARK 500 4 HIS A 108 11.01 50.06 REMARK 500 5 ALA A 18 -170.08 -178.90 REMARK 500 5 THR A 31 -4.06 66.36 REMARK 500 5 GLU A 33 154.99 -40.06 REMARK 500 5 SER A 34 -50.00 78.35 REMARK 500 5 ASN A 55 26.91 -72.10 REMARK 500 5 ALA A 56 -39.33 -150.51 REMARK 500 5 SER A 71 54.90 75.88 REMARK 500 5 ASP A 79 -4.08 66.83 REMARK 500 5 LYS A 87 -132.58 67.43 REMARK 500 5 HIS A 107 11.70 47.81 REMARK 500 5 HIS A 108 32.94 36.68 REMARK 500 6 ALA A 18 -172.98 -178.03 REMARK 500 6 SER A 36 -75.56 -74.80 REMARK 500 6 GLU A 44 -38.92 63.98 REMARK 500 6 THR A 45 22.90 -79.41 REMARK 500 6 LYS A 54 44.92 -87.45 REMARK 500 6 ALA A 56 -80.69 -119.42 REMARK 500 6 GLU A 57 82.85 -179.61 REMARK 500 6 PRO A 59 157.81 -49.98 REMARK 500 REMARK 500 THIS ENTRY HAS 182 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16051 RELATED DB: BMRB REMARK 900 RELATED ID: MAR214A RELATED DB: TARGETDB DBREF 2KBN A 2 101 UNP Q8Q045 Q8Q045_METMA 67 166 SEQADV 2KBN MET A 1 UNP Q8Q045 EXPRESSION TAG SEQADV 2KBN LEU A 102 UNP Q8Q045 EXPRESSION TAG SEQADV 2KBN GLU A 103 UNP Q8Q045 EXPRESSION TAG SEQADV 2KBN HIS A 104 UNP Q8Q045 EXPRESSION TAG SEQADV 2KBN HIS A 105 UNP Q8Q045 EXPRESSION TAG SEQADV 2KBN HIS A 106 UNP Q8Q045 EXPRESSION TAG SEQADV 2KBN HIS A 107 UNP Q8Q045 EXPRESSION TAG SEQADV 2KBN HIS A 108 UNP Q8Q045 EXPRESSION TAG SEQADV 2KBN HIS A 109 UNP Q8Q045 EXPRESSION TAG SEQRES 1 A 109 MET GLU PRO GLN LEU THR LYS ILE VAL ASP ILE VAL GLU SEQRES 2 A 109 ASN GLY GLN TRP ALA ASN LEU LYS ALA LYS VAL ILE GLN SEQRES 3 A 109 LEU TRP GLU ASN THR HIS GLU SER ILE SER GLN VAL GLY SEQRES 4 A 109 LEU LEU GLY ASP GLU THR GLY ILE ILE LYS PHE THR ILE SEQRES 5 A 109 TRP LYS ASN ALA GLU LEU PRO LEU LEU GLU GLN GLY GLU SEQRES 6 A 109 SER TYR LEU LEU ARG SER VAL VAL VAL GLY GLU TYR ASN SEQRES 7 A 109 ASP ARG PHE GLN VAL GLN VAL ASN LYS ASN SER SER ILE SEQRES 8 A 109 GLU LYS LEU SER GLU PRO ILE GLU VAL GLY LEU GLU HIS SEQRES 9 A 109 HIS HIS HIS HIS HIS HELIX 1 1 ASN A 55 GLU A 57 5 3 SHEET 1 A 7 SER A 90 LYS A 93 0 SHEET 2 A 7 SER A 66 TYR A 77 -1 N LEU A 68 O GLU A 92 SHEET 3 A 7 ARG A 80 VAL A 85 -1 O GLN A 82 N GLY A 75 SHEET 4 A 7 ILE A 48 TRP A 53 1 N LYS A 49 O VAL A 83 SHEET 5 A 7 ILE A 35 GLY A 42 -1 N LEU A 41 O ILE A 48 SHEET 6 A 7 TRP A 17 GLU A 29 -1 N TRP A 28 O VAL A 38 SHEET 7 A 7 SER A 66 TYR A 77 -1 O LEU A 69 N LEU A 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1