HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 19-DEC-08 2KCD TITLE SOLUTION NMR STRUCTURE OF SSP0047 FROM STAPHYLOCOCCUS SAPROPHYTICUS. TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SYR6. COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN SSP0047; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS SAPROPHYTICUS SUBSP. SOURCE 3 SAPROPHYTICUS ATCC 15305; SOURCE 4 ORGANISM_TAXID: 342451; SOURCE 5 STRAIN: DSM 20229; SOURCE 6 ATCC: 15305; SOURCE 7 GENE: SSP0047; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS ALPHA BETA, STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,K.DING,C.X.CHEN,M.JIANG,C.CICCOSANTI,R.XIAO,J.LIU, AUTHOR 2 M.C.BARAN,G.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE,M.A.KENNEDY, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 2 16-MAR-22 2KCD 1 REMARK SEQADV REVDAT 1 10-FEB-09 2KCD 0 JRNL AUTH T.A.RAMELOT,K.DING,C.X.CHEN,M.JIANG,C.CICCOSANTI,R.XIAO, JRNL AUTH 2 J.LIU,M.C.BARAN,G.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE, JRNL AUTH 3 M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF SSP0047 FROM STAPHYLOCOCCUS JRNL TITL 2 SAPROPHYTICUS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM JRNL TITL 3 TARGET SYR6. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE LINUX9, X-PLOR NIH 2.20 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NIH-XPLOR-2.20 REFINEMENT WITH HYDROGEN REMARK 3 BOND PMF, RADIUS OF GYRATION, ETC. REMARK 4 REMARK 4 2KCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000100945. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 273 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM MES, 100 MM SODIUM REMARK 210 CHLORIDE, 5 MM CALCIUM CHLORIDE, REMARK 210 10 MM DTT, 0.02 % SODIUM AZIDE, REMARK 210 0.3 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 95% H2O/5% D2O; 20 MM REMARK 210 MES, 100 MM SODIUM CHLORIDE, 5 REMARK 210 MM CALCIUM CHLORIDE, 10 MM DTT, REMARK 210 0.02 % SODIUM AZIDE, .3 MM [U- REMARK 210 100% 13C; U-100% 15N] PROTEIN, REMARK 210 100% D2O; 20 MM MES, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 0.3 MM [U-5% 13C; REMARK 210 U-100% 15N] PROTEIN, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 4D 1H-13C NOESY; 3D HNCO; 3D REMARK 210 HNCA; 3D HN(CO)CA; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D C(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HCCH-COSY; 3D CBCACOCAHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, TOPSPIN 2.1, REMARK 210 AUTOSTRUCTURE 2.2.1, X-PLOR NIH REMARK 210 2.20, SPARKY 3.113, PSVS 1.3, REMARK 210 AUTOASSIGN 2.3.0, PDBSTAT 5.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 125 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H3 MET A 1 H THR A 2 1.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 35 -73.71 -89.31 REMARK 500 1 LEU A 43 7.55 -151.75 REMARK 500 1 SER A 47 -92.96 -41.35 REMARK 500 1 ASN A 48 49.16 -101.15 REMARK 500 1 HIS A 87 1.04 59.46 REMARK 500 1 VAL A 98 -75.18 -77.01 REMARK 500 1 HIS A 115 11.78 -148.99 REMARK 500 1 HIS A 118 -18.46 -153.92 REMARK 500 2 ASP A 33 -4.62 -59.58 REMARK 500 2 ASP A 38 -7.48 -51.96 REMARK 500 2 LEU A 43 25.64 38.46 REMARK 500 2 SER A 47 -105.87 -54.52 REMARK 500 2 GLN A 74 11.90 -60.40 REMARK 500 2 GLN A 76 -177.11 -173.42 REMARK 500 2 HIS A 87 -143.32 71.13 REMARK 500 2 ASP A 88 132.85 58.82 REMARK 500 2 THR A 97 -14.94 -49.61 REMARK 500 2 MET A 99 145.65 -172.00 REMARK 500 3 PRO A 37 165.07 -46.88 REMARK 500 3 VAL A 41 -50.10 -139.74 REMARK 500 3 ARG A 42 -123.24 32.31 REMARK 500 3 ASN A 48 10.39 48.23 REMARK 500 3 GLN A 74 38.91 75.14 REMARK 500 3 HIS A 87 10.12 47.35 REMARK 500 3 VAL A 98 -79.24 -95.24 REMARK 500 3 LEU A 101 -70.19 -102.20 REMARK 500 3 LEU A 102 -92.24 -86.51 REMARK 500 3 ASP A 103 95.99 39.69 REMARK 500 3 HIS A 115 148.44 59.72 REMARK 500 4 ASP A 38 -14.61 -44.87 REMARK 500 4 ARG A 42 87.91 -66.48 REMARK 500 4 LEU A 43 9.39 53.27 REMARK 500 4 GLN A 76 140.11 -173.33 REMARK 500 4 GLU A 85 -78.57 58.63 REMARK 500 4 ASN A 86 -27.95 -142.09 REMARK 500 4 HIS A 87 -145.32 -138.96 REMARK 500 4 VAL A 98 -74.14 -123.28 REMARK 500 4 LEU A 101 -73.93 -95.36 REMARK 500 4 ASP A 103 78.75 -154.37 REMARK 500 4 HIS A 118 86.28 37.58 REMARK 500 5 ASP A 34 -76.31 -72.42 REMARK 500 5 ASP A 38 -9.20 -51.73 REMARK 500 5 GLN A 39 -8.83 -57.30 REMARK 500 5 PRO A 45 -2.26 -52.00 REMARK 500 5 HIS A 87 4.55 56.34 REMARK 500 5 THR A 97 -27.24 -38.13 REMARK 500 5 MET A 99 153.33 179.82 REMARK 500 5 LEU A 101 -67.83 -105.83 REMARK 500 5 HIS A 115 -168.39 55.24 REMARK 500 6 THR A 2 15.79 46.05 REMARK 500 REMARK 500 THIS ENTRY HAS 246 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SYR6 RELATED DB: TARGETDB DBREF 2KCD A 1 112 UNP Q4A134 Q4A134_STAS1 1 112 SEQADV 2KCD LEU A 113 UNP Q4A134 EXPRESSION TAG SEQADV 2KCD GLU A 114 UNP Q4A134 EXPRESSION TAG SEQADV 2KCD HIS A 115 UNP Q4A134 EXPRESSION TAG SEQADV 2KCD HIS A 116 UNP Q4A134 EXPRESSION TAG SEQADV 2KCD HIS A 117 UNP Q4A134 EXPRESSION TAG SEQADV 2KCD HIS A 118 UNP Q4A134 EXPRESSION TAG SEQADV 2KCD HIS A 119 UNP Q4A134 EXPRESSION TAG SEQADV 2KCD HIS A 120 UNP Q4A134 EXPRESSION TAG SEQRES 1 A 120 MET THR LEU GLU LEU GLN LEU LYS HIS TYR ILE THR ASN SEQRES 2 A 120 LEU PHE ASN LEU PRO ARG ASP GLU LYS TRP GLU CYS GLU SEQRES 3 A 120 SER ILE GLU GLU VAL ALA ASP ASP ILE LEU PRO ASP GLN SEQRES 4 A 120 TYR VAL ARG LEU GLY PRO LEU SER ASN LYS ILE LEU GLN SEQRES 5 A 120 THR ASN THR TYR TYR SER ASP THR LEU HIS LYS SER ASN SEQRES 6 A 120 ILE TYR PRO PHE ILE LEU TYR TYR GLN LYS GLN LEU ILE SEQRES 7 A 120 ALA ILE GLY PHE ILE ASP GLU ASN HIS ASP MET ASP PHE SEQRES 8 A 120 LEU TYR LEU HIS ASN THR VAL MET PRO LEU LEU ASP GLN SEQRES 9 A 120 ARG TYR LEU LEU THR GLY GLY GLN LEU GLU HIS HIS HIS SEQRES 10 A 120 HIS HIS HIS HELIX 1 1 THR A 2 ASN A 16 1 15 HELIX 2 2 ALA A 32 LEU A 36 1 5 HELIX 3 3 SER A 58 SER A 64 1 7 HELIX 4 4 GLN A 104 GLY A 110 1 7 SHEET 1 A 5 GLU A 24 VAL A 31 0 SHEET 2 A 5 ILE A 50 TYR A 57 -1 O LEU A 51 N GLU A 30 SHEET 3 A 5 TYR A 67 TYR A 72 -1 O ILE A 70 N ASN A 54 SHEET 4 A 5 LEU A 77 ILE A 83 -1 O ILE A 78 N LEU A 71 SHEET 5 A 5 MET A 89 LEU A 94 -1 O TYR A 93 N ILE A 80 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1