data_2KD8 # _entry.id 2KD8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KD8 pdb_00002kd8 10.2210/pdb2kd8/pdb RCSB RCSB100975 ? ? WWPDB D_1000100975 ? ? # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 15697 _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Chemical shifts' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KD8 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-01-04 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Thiviyanathan, V.' 1 'Kulasegran Shylini, R.' 2 'Gorenstein, D.G.' 3 'kaluarachchi, K.' 4 # _citation.id primary _citation.title 'Solution structure of the stem-loop IIId of GBV-B IRES' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Thiviyanathan, V.' 1 ? primary 'Kulasegran Shylini, R.' 2 ? primary 'kaluarachchi, K.' 3 ? primary 'Lemon, S.' 4 ? primary 'Gorenstein, D.G.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-R(*GP*GP*AP*UP*GP*GP*UP*UP*GP*GP*GP*GP*UP*UP*AP*GP*CP*CP*AP*UP*CP*C)-3'" _entity.formula_weight 7107.234 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGAUGGUUGGGGUUAGCCAUCC _entity_poly.pdbx_seq_one_letter_code_can GGAUGGUUGGGGUUAGCCAUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 U n 1 5 G n 1 6 G n 1 7 U n 1 8 U n 1 9 G n 1 10 G n 1 11 G n 1 12 G n 1 13 U n 1 14 U n 1 15 A n 1 16 G n 1 17 C n 1 18 C n 1 19 A n 1 20 U n 1 21 C n 1 22 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 1 # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2KD8 _struct_ref.pdbx_db_accession 2KD8 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code GGAUGGUUGGGGUUAGCCAUCC _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2KD8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2KD8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 22 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 1 2 1 '2D DQF-COSY' 1 3 1 '2D 1H-13C HSQC' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '1-1.6 mM RNA, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 750 Varian INOVA 1 'Varian INOVA' 600 Varian INOVA 2 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2KD8 _pdbx_nmr_refine.method 'distance geometry, molecular dynamics, matrix relaxation' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 12 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KD8 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KD8 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Varian 'chemical shift assignment' VnmrJ ? 1 Brunger refinement X-PLOR 3.1 2 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KD8 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KD8 _struct.title 'Solution structure of the stem-loop IIId of GBV-B IRES' _struct.pdbx_model_details 'closest to the average, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KD8 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'IRES, GB Virus B, Flavivirus, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 1 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 1 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 1 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 2 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 2 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 2 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 20 N3 ? ? A A 3 A U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 20 O4 ? ? A A 3 A U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 19 N1 ? ? A U 4 A A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 19 N6 ? ? A U 4 A A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 18 N3 ? ? A G 5 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 18 O2 ? ? A G 5 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 18 N4 ? ? A G 5 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 6 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 6 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 6 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 N3 ? ? ? 1_555 A G 16 O6 ? ? A U 7 A G 16 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A U 7 O2 ? ? ? 1_555 A G 16 N1 ? ? A U 7 A G 16 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog19 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 15 N1 ? ? A U 8 A A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 15 N6 ? ? A U 8 A A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 9 N1 ? ? ? 1_555 A U 14 O2 ? ? A G 9 A U 14 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog22 hydrog ? ? A G 9 O6 ? ? ? 1_555 A U 14 N3 ? ? A G 9 A U 14 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2KD8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 G 11 11 11 G G A . n A 1 12 G 12 12 12 G G A . n A 1 13 U 13 13 13 U U A . n A 1 14 U 14 14 14 U U A . n A 1 15 A 15 15 15 A A A . n A 1 16 G 16 16 16 G G A . n A 1 17 C 17 17 17 C C A . n A 1 18 C 18 18 18 C C A . n A 1 19 A 19 19 19 A A A . n A 1 20 U 20 20 20 U U A . n A 1 21 C 21 21 21 C C A . n A 1 22 C 22 22 22 C C A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-01-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' # _pdbx_nmr_exptl_sample.component RNA-1 _pdbx_nmr_exptl_sample.concentration ? _pdbx_nmr_exptl_sample.concentration_range 1-1.6 _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.78 117.00 -3.22 0.50 N 2 1 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.07 117.70 3.37 0.50 N 3 1 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.22 118.60 -5.38 0.60 N 4 1 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.20 108.50 4.70 0.70 N 5 1 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 113.01 108.50 4.51 0.70 N 6 1 C4 A A 15 ? ? C5 A A 15 ? ? C6 A A 15 ? ? 113.67 117.00 -3.33 0.50 N 7 1 C5 A A 15 ? ? C6 A A 15 ? ? N1 A A 15 ? ? 120.72 117.70 3.02 0.50 N 8 1 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 113.40 118.60 -5.20 0.60 N 9 1 N3 A C 17 ? ? C2 A C 17 ? ? O2 A C 17 ? ? 117.06 121.90 -4.84 0.70 N 10 1 N3 A C 18 ? ? C2 A C 18 ? ? O2 A C 18 ? ? 117.28 121.90 -4.62 0.70 N 11 1 C5 A A 19 ? ? C6 A A 19 ? ? N1 A A 19 ? ? 121.40 117.70 3.70 0.50 N 12 1 N1 A A 19 ? ? C6 A A 19 ? ? N6 A A 19 ? ? 114.16 118.60 -4.44 0.60 N 13 1 N3 A C 21 ? ? C2 A C 21 ? ? O2 A C 21 ? ? 117.29 121.90 -4.61 0.70 N 14 1 N1 A C 22 ? ? C2 A C 22 ? ? O2 A C 22 ? ? 122.65 118.90 3.75 0.60 N 15 1 N3 A C 22 ? ? C2 A C 22 ? ? O2 A C 22 ? ? 116.82 121.90 -5.08 0.70 N 16 2 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 120.79 117.70 3.09 0.50 N 17 2 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 114.24 118.60 -4.36 0.60 N 18 2 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.05 108.50 4.55 0.70 N 19 2 C4 A A 15 ? ? C5 A A 15 ? ? C6 A A 15 ? ? 113.78 117.00 -3.22 0.50 N 20 2 C5 A A 15 ? ? C6 A A 15 ? ? N1 A A 15 ? ? 120.92 117.70 3.22 0.50 N 21 2 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 113.71 118.60 -4.89 0.60 N 22 2 N3 A C 17 ? ? C2 A C 17 ? ? O2 A C 17 ? ? 117.00 121.90 -4.90 0.70 N 23 2 N3 A C 18 ? ? C2 A C 18 ? ? O2 A C 18 ? ? 116.89 121.90 -5.01 0.70 N 24 2 C5 A A 19 ? ? C6 A A 19 ? ? N1 A A 19 ? ? 121.36 117.70 3.66 0.50 N 25 2 N1 A A 19 ? ? C6 A A 19 ? ? N6 A A 19 ? ? 114.52 118.60 -4.08 0.60 N 26 2 "O4'" A U 20 ? ? "C1'" A U 20 ? ? N1 A U 20 ? ? 112.71 108.50 4.21 0.70 N 27 2 N3 A C 21 ? ? C2 A C 21 ? ? O2 A C 21 ? ? 117.18 121.90 -4.72 0.70 N 28 2 N3 A C 22 ? ? C2 A C 22 ? ? O2 A C 22 ? ? 116.91 121.90 -4.99 0.70 N 29 3 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 120.96 117.70 3.26 0.50 N 30 3 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.35 118.60 -5.25 0.60 N 31 3 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 112.87 108.50 4.37 0.70 N 32 3 C4 A A 15 ? ? C5 A A 15 ? ? C6 A A 15 ? ? 113.70 117.00 -3.30 0.50 N 33 3 C5 A A 15 ? ? C6 A A 15 ? ? N1 A A 15 ? ? 120.84 117.70 3.14 0.50 N 34 3 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 113.34 118.60 -5.26 0.60 N 35 3 N3 A C 17 ? ? C2 A C 17 ? ? O2 A C 17 ? ? 117.00 121.90 -4.90 0.70 N 36 3 N3 A C 18 ? ? C2 A C 18 ? ? O2 A C 18 ? ? 117.21 121.90 -4.69 0.70 N 37 3 C4 A A 19 ? ? C5 A A 19 ? ? C6 A A 19 ? ? 113.92 117.00 -3.08 0.50 N 38 3 C5 A A 19 ? ? C6 A A 19 ? ? N1 A A 19 ? ? 121.23 117.70 3.53 0.50 N 39 3 N1 A A 19 ? ? C6 A A 19 ? ? N6 A A 19 ? ? 113.89 118.60 -4.71 0.60 N 40 3 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 112.76 108.50 4.26 0.70 N 41 3 N3 A C 21 ? ? C2 A C 21 ? ? O2 A C 21 ? ? 116.98 121.90 -4.92 0.70 N 42 3 N1 A C 22 ? ? C2 A C 22 ? ? O2 A C 22 ? ? 122.55 118.90 3.65 0.60 N 43 3 N3 A C 22 ? ? C2 A C 22 ? ? O2 A C 22 ? ? 116.69 121.90 -5.21 0.70 N 44 4 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.95 117.00 -3.05 0.50 N 45 4 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 120.92 117.70 3.22 0.50 N 46 4 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.24 118.60 -5.36 0.60 N 47 4 C4 A A 15 ? ? C5 A A 15 ? ? C6 A A 15 ? ? 113.66 117.00 -3.34 0.50 N 48 4 C5 A A 15 ? ? C6 A A 15 ? ? N1 A A 15 ? ? 120.77 117.70 3.07 0.50 N 49 4 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 113.63 118.60 -4.97 0.60 N 50 4 N3 A C 17 ? ? C2 A C 17 ? ? O2 A C 17 ? ? 116.95 121.90 -4.95 0.70 N 51 4 N3 A C 18 ? ? C2 A C 18 ? ? O2 A C 18 ? ? 117.00 121.90 -4.90 0.70 N 52 4 C4 A A 19 ? ? C5 A A 19 ? ? C6 A A 19 ? ? 113.76 117.00 -3.24 0.50 N 53 4 C5 A A 19 ? ? C6 A A 19 ? ? N1 A A 19 ? ? 121.23 117.70 3.53 0.50 N 54 4 N1 A A 19 ? ? C6 A A 19 ? ? N6 A A 19 ? ? 113.58 118.60 -5.02 0.60 N 55 4 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 113.04 108.50 4.54 0.70 N 56 4 N3 A C 21 ? ? C2 A C 21 ? ? O2 A C 21 ? ? 117.13 121.90 -4.77 0.70 N 57 4 N1 A C 22 ? ? C2 A C 22 ? ? O2 A C 22 ? ? 122.51 118.90 3.61 0.60 N 58 4 N3 A C 22 ? ? C2 A C 22 ? ? O2 A C 22 ? ? 116.71 121.90 -5.19 0.70 N 59 5 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 120.91 117.70 3.21 0.50 N 60 5 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.84 118.60 -4.76 0.60 N 61 5 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.24 108.50 4.74 0.70 N 62 5 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 112.80 108.50 4.30 0.70 N 63 5 N1 A G 9 ? ? C6 A G 9 ? ? O6 A G 9 ? ? 116.12 119.90 -3.78 0.60 N 64 5 C4 A A 15 ? ? C5 A A 15 ? ? C6 A A 15 ? ? 113.62 117.00 -3.38 0.50 N 65 5 C5 A A 15 ? ? C6 A A 15 ? ? N1 A A 15 ? ? 120.84 117.70 3.14 0.50 N 66 5 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 113.36 118.60 -5.24 0.60 N 67 5 N3 A C 17 ? ? C2 A C 17 ? ? O2 A C 17 ? ? 117.24 121.90 -4.66 0.70 N 68 5 N3 A C 18 ? ? C2 A C 18 ? ? O2 A C 18 ? ? 117.30 121.90 -4.60 0.70 N 69 5 C4 A A 19 ? ? C5 A A 19 ? ? C6 A A 19 ? ? 113.88 117.00 -3.12 0.50 N 70 5 C5 A A 19 ? ? C6 A A 19 ? ? N1 A A 19 ? ? 121.35 117.70 3.65 0.50 N 71 5 N1 A A 19 ? ? C6 A A 19 ? ? N6 A A 19 ? ? 114.37 118.60 -4.23 0.60 N 72 5 "O4'" A U 20 ? ? "C1'" A U 20 ? ? N1 A U 20 ? ? 112.89 108.50 4.39 0.70 N 73 5 N3 A C 21 ? ? C2 A C 21 ? ? O2 A C 21 ? ? 117.52 121.90 -4.38 0.70 N 74 5 N3 A C 22 ? ? C2 A C 22 ? ? O2 A C 22 ? ? 116.98 121.90 -4.92 0.70 N 75 6 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.84 117.00 -3.16 0.50 N 76 6 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.11 117.70 3.41 0.50 N 77 6 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.52 118.60 -5.08 0.60 N 78 6 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.07 108.50 4.57 0.70 N 79 6 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 113.15 108.50 4.65 0.70 N 80 6 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 112.96 108.50 4.46 0.70 N 81 6 C4 A A 15 ? ? C5 A A 15 ? ? C6 A A 15 ? ? 113.71 117.00 -3.29 0.50 N 82 6 C5 A A 15 ? ? C6 A A 15 ? ? N1 A A 15 ? ? 120.77 117.70 3.07 0.50 N 83 6 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 113.50 118.60 -5.10 0.60 N 84 6 N3 A C 17 ? ? C2 A C 17 ? ? O2 A C 17 ? ? 117.08 121.90 -4.82 0.70 N 85 6 N3 A C 18 ? ? C2 A C 18 ? ? O2 A C 18 ? ? 117.14 121.90 -4.76 0.70 N 86 6 C5 A A 19 ? ? C6 A A 19 ? ? N1 A A 19 ? ? 121.54 117.70 3.84 0.50 N 87 6 N1 A A 19 ? ? C6 A A 19 ? ? N6 A A 19 ? ? 114.64 118.60 -3.96 0.60 N 88 6 N3 A C 21 ? ? C2 A C 21 ? ? O2 A C 21 ? ? 117.02 121.90 -4.88 0.70 N 89 6 N3 A C 22 ? ? C2 A C 22 ? ? O2 A C 22 ? ? 117.03 121.90 -4.87 0.70 N 90 7 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.66 117.00 -3.34 0.50 N 91 7 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.12 117.70 3.42 0.50 N 92 7 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.52 118.60 -5.08 0.60 N 93 7 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.64 108.50 5.14 0.70 N 94 7 "O4'" A G 10 ? ? "C1'" A G 10 ? ? N9 A G 10 ? ? 112.73 108.50 4.23 0.70 N 95 7 C4 A A 15 ? ? C5 A A 15 ? ? C6 A A 15 ? ? 113.88 117.00 -3.12 0.50 N 96 7 C5 A A 15 ? ? C6 A A 15 ? ? N1 A A 15 ? ? 121.03 117.70 3.33 0.50 N 97 7 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 114.11 118.60 -4.49 0.60 N 98 7 N3 A C 17 ? ? C2 A C 17 ? ? O2 A C 17 ? ? 116.98 121.90 -4.92 0.70 N 99 7 N3 A C 18 ? ? C2 A C 18 ? ? O2 A C 18 ? ? 116.88 121.90 -5.02 0.70 N 100 7 C5 A A 19 ? ? C6 A A 19 ? ? N1 A A 19 ? ? 121.17 117.70 3.47 0.50 N 101 7 N1 A A 19 ? ? C6 A A 19 ? ? N6 A A 19 ? ? 114.08 118.60 -4.52 0.60 N 102 7 N3 A C 21 ? ? C2 A C 21 ? ? O2 A C 21 ? ? 116.99 121.90 -4.91 0.70 N 103 7 N3 A C 22 ? ? C2 A C 22 ? ? O2 A C 22 ? ? 117.23 121.90 -4.67 0.70 N 104 8 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.97 117.00 -3.03 0.50 N 105 8 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 120.96 117.70 3.26 0.50 N 106 8 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.61 118.60 -4.99 0.60 N 107 8 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 112.84 108.50 4.34 0.70 N 108 8 C4 A A 15 ? ? C5 A A 15 ? ? C6 A A 15 ? ? 113.95 117.00 -3.05 0.50 N 109 8 C5 A A 15 ? ? C6 A A 15 ? ? N1 A A 15 ? ? 120.80 117.70 3.10 0.50 N 110 8 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 113.96 118.60 -4.64 0.60 N 111 8 N3 A C 17 ? ? C2 A C 17 ? ? O2 A C 17 ? ? 117.07 121.90 -4.83 0.70 N 112 8 N3 A C 18 ? ? C2 A C 18 ? ? O2 A C 18 ? ? 117.12 121.90 -4.78 0.70 N 113 8 C4 A A 19 ? ? C5 A A 19 ? ? C6 A A 19 ? ? 113.80 117.00 -3.20 0.50 N 114 8 C5 A A 19 ? ? C6 A A 19 ? ? N1 A A 19 ? ? 121.30 117.70 3.60 0.50 N 115 8 N1 A A 19 ? ? C6 A A 19 ? ? N6 A A 19 ? ? 113.77 118.60 -4.83 0.60 N 116 8 N3 A C 21 ? ? C2 A C 21 ? ? O2 A C 21 ? ? 117.24 121.90 -4.66 0.70 N 117 8 N3 A C 22 ? ? C2 A C 22 ? ? O2 A C 22 ? ? 116.97 121.90 -4.93 0.70 N 118 9 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.83 117.00 -3.17 0.50 N 119 9 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.05 117.70 3.35 0.50 N 120 9 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.40 118.60 -5.20 0.60 N 121 9 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.02 108.50 4.52 0.70 N 122 9 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 113.01 108.50 4.51 0.70 N 123 9 C4 A A 15 ? ? C5 A A 15 ? ? C6 A A 15 ? ? 113.67 117.00 -3.33 0.50 N 124 9 C5 A A 15 ? ? C6 A A 15 ? ? N1 A A 15 ? ? 120.87 117.70 3.17 0.50 N 125 9 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 113.38 118.60 -5.22 0.60 N 126 9 N1 A C 17 ? ? C2 A C 17 ? ? O2 A C 17 ? ? 122.59 118.90 3.69 0.60 N 127 9 N3 A C 17 ? ? C2 A C 17 ? ? O2 A C 17 ? ? 116.72 121.90 -5.18 0.70 N 128 9 N3 A C 18 ? ? C2 A C 18 ? ? O2 A C 18 ? ? 116.97 121.90 -4.93 0.70 N 129 9 C4 A A 19 ? ? C5 A A 19 ? ? C6 A A 19 ? ? 113.89 117.00 -3.11 0.50 N 130 9 C5 A A 19 ? ? C6 A A 19 ? ? N1 A A 19 ? ? 121.39 117.70 3.69 0.50 N 131 9 N1 A A 19 ? ? C6 A A 19 ? ? N6 A A 19 ? ? 114.16 118.60 -4.44 0.60 N 132 9 N3 A C 21 ? ? C2 A C 21 ? ? O2 A C 21 ? ? 116.99 121.90 -4.91 0.70 N 133 9 N3 A C 22 ? ? C2 A C 22 ? ? O2 A C 22 ? ? 116.86 121.90 -5.04 0.70 N 134 10 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.78 117.00 -3.22 0.50 N 135 10 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.17 117.70 3.47 0.50 N 136 10 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.66 118.60 -4.94 0.60 N 137 10 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.31 108.50 4.81 0.70 N 138 10 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 112.81 108.50 4.31 0.70 N 139 10 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 112.75 108.50 4.25 0.70 N 140 10 N1 A G 9 ? ? C6 A G 9 ? ? O6 A G 9 ? ? 116.27 119.90 -3.63 0.60 N 141 10 C4 A A 15 ? ? C5 A A 15 ? ? C6 A A 15 ? ? 113.73 117.00 -3.27 0.50 N 142 10 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 113.69 118.60 -4.91 0.60 N 143 10 N3 A C 17 ? ? C2 A C 17 ? ? O2 A C 17 ? ? 116.90 121.90 -5.00 0.70 N 144 10 N3 A C 18 ? ? C2 A C 18 ? ? O2 A C 18 ? ? 117.06 121.90 -4.84 0.70 N 145 10 C4 A A 19 ? ? C5 A A 19 ? ? C6 A A 19 ? ? 113.93 117.00 -3.07 0.50 N 146 10 C5 A A 19 ? ? C6 A A 19 ? ? N1 A A 19 ? ? 121.40 117.70 3.70 0.50 N 147 10 N1 A A 19 ? ? C6 A A 19 ? ? N6 A A 19 ? ? 113.81 118.60 -4.79 0.60 N 148 10 N3 A C 21 ? ? C2 A C 21 ? ? O2 A C 21 ? ? 117.02 121.90 -4.88 0.70 N 149 10 N3 A C 22 ? ? C2 A C 22 ? ? O2 A C 22 ? ? 116.84 121.90 -5.06 0.70 N 150 11 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.98 117.00 -3.02 0.50 N 151 11 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 120.95 117.70 3.25 0.50 N 152 11 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.27 118.60 -5.33 0.60 N 153 11 C4 A A 15 ? ? C5 A A 15 ? ? C6 A A 15 ? ? 113.88 117.00 -3.12 0.50 N 154 11 C5 A A 15 ? ? C6 A A 15 ? ? N1 A A 15 ? ? 120.94 117.70 3.24 0.50 N 155 11 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 114.24 118.60 -4.36 0.60 N 156 11 N1 A G 16 ? ? C6 A G 16 ? ? O6 A G 16 ? ? 116.24 119.90 -3.66 0.60 N 157 11 N3 A C 17 ? ? C2 A C 17 ? ? O2 A C 17 ? ? 117.21 121.90 -4.69 0.70 N 158 11 N3 A C 18 ? ? C2 A C 18 ? ? O2 A C 18 ? ? 117.20 121.90 -4.70 0.70 N 159 11 C5 A A 19 ? ? C6 A A 19 ? ? N1 A A 19 ? ? 121.19 117.70 3.49 0.50 N 160 11 N1 A A 19 ? ? C6 A A 19 ? ? N6 A A 19 ? ? 114.30 118.60 -4.30 0.60 N 161 11 N3 A C 21 ? ? C2 A C 21 ? ? O2 A C 21 ? ? 117.09 121.90 -4.81 0.70 N 162 11 N3 A C 22 ? ? C2 A C 22 ? ? O2 A C 22 ? ? 117.00 121.90 -4.90 0.70 N 163 12 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.86 117.00 -3.14 0.50 N 164 12 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 120.95 117.70 3.25 0.50 N 165 12 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.23 118.60 -5.37 0.60 N 166 12 C4 A A 15 ? ? C5 A A 15 ? ? C6 A A 15 ? ? 113.98 117.00 -3.02 0.50 N 167 12 C5 A A 15 ? ? C6 A A 15 ? ? N1 A A 15 ? ? 120.82 117.70 3.12 0.50 N 168 12 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 114.41 118.60 -4.19 0.60 N 169 12 N3 A C 17 ? ? C2 A C 17 ? ? O2 A C 17 ? ? 117.27 121.90 -4.63 0.70 N 170 12 N3 A C 18 ? ? C2 A C 18 ? ? O2 A C 18 ? ? 117.19 121.90 -4.71 0.70 N 171 12 C4 A A 19 ? ? C5 A A 19 ? ? C6 A A 19 ? ? 113.95 117.00 -3.05 0.50 N 172 12 C5 A A 19 ? ? C6 A A 19 ? ? N1 A A 19 ? ? 121.51 117.70 3.81 0.50 N 173 12 N1 A A 19 ? ? C6 A A 19 ? ? N6 A A 19 ? ? 114.23 118.60 -4.37 0.60 N 174 12 N3 A C 21 ? ? C2 A C 21 ? ? O2 A C 21 ? ? 117.19 121.90 -4.71 0.70 N 175 12 N3 A C 22 ? ? C2 A C 22 ? ? O2 A C 22 ? ? 117.04 121.90 -4.86 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 9 ? ? 0.055 'SIDE CHAIN' 2 2 G A 6 ? ? 0.066 'SIDE CHAIN' 3 2 G A 16 ? ? 0.073 'SIDE CHAIN' 4 3 G A 9 ? ? 0.078 'SIDE CHAIN' 5 3 C A 18 ? ? 0.069 'SIDE CHAIN' 6 4 G A 2 ? ? 0.066 'SIDE CHAIN' 7 7 G A 2 ? ? 0.056 'SIDE CHAIN' 8 7 G A 9 ? ? 0.079 'SIDE CHAIN' 9 7 U A 13 ? ? 0.063 'SIDE CHAIN' 10 7 A A 19 ? ? 0.092 'SIDE CHAIN' 11 8 U A 13 ? ? 0.062 'SIDE CHAIN' 12 9 G A 2 ? ? 0.058 'SIDE CHAIN' 13 9 G A 9 ? ? 0.071 'SIDE CHAIN' 14 9 A A 19 ? ? 0.090 'SIDE CHAIN' 15 10 A A 15 ? ? 0.058 'SIDE CHAIN' 16 10 A A 19 ? ? 0.064 'SIDE CHAIN' 17 12 G A 10 ? ? 0.076 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2KD8 'a-form double helix' 2KD8 'hairpin loop' 2KD8 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 22 1_555 -0.297 -0.049 0.030 -1.231 1.263 -2.265 1 A_G1:C22_A A 1 ? A 22 ? 19 1 1 A G 2 1_555 A C 21 1_555 -0.468 -0.074 -0.161 0.367 -15.436 4.595 2 A_G2:C21_A A 2 ? A 21 ? 19 1 1 A A 3 1_555 A U 20 1_555 0.065 0.069 -0.023 -3.770 -15.623 6.680 3 A_A3:U20_A A 3 ? A 20 ? 20 1 1 A U 4 1_555 A A 19 1_555 -0.165 0.050 -0.151 -2.334 -15.750 -5.377 4 A_U4:A19_A A 4 ? A 19 ? 20 1 1 A G 5 1_555 A C 18 1_555 -0.221 -0.130 0.194 -6.396 -14.698 -1.969 5 A_G5:C18_A A 5 ? A 18 ? 19 1 1 A G 6 1_555 A C 17 1_555 -0.252 -0.098 -0.105 -12.090 -21.615 0.052 6 A_G6:C17_A A 6 ? A 17 ? 19 1 1 A U 7 1_555 A G 16 1_555 1.929 -0.278 0.417 -13.759 -10.124 1.733 7 A_U7:G16_A A 7 ? A 16 ? 28 1 1 A U 8 1_555 A A 15 1_555 -0.056 -0.030 0.511 -8.805 -6.583 5.225 8 A_U8:A15_A A 8 ? A 15 ? 20 1 1 A G 9 1_555 A U 14 1_555 -1.830 -0.306 0.350 3.011 -20.635 0.788 9 A_G9:U14_A A 9 ? A 14 ? 28 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 22 1_555 A G 2 1_555 A C 21 1_555 0.176 -1.994 3.261 0.282 12.673 25.758 -6.493 -0.300 2.072 26.482 -0.590 28.660 1 AA_G1G2:C21C22_AA A 1 ? A 22 ? A 2 ? A 21 ? 1 A G 2 1_555 A C 21 1_555 A A 3 1_555 A U 20 1_555 -0.025 -1.314 3.341 -1.910 12.117 33.708 -3.803 -0.223 2.720 20.088 3.167 35.809 2 AA_G2A3:U20C21_AA A 2 ? A 21 ? A 3 ? A 20 ? 1 A A 3 1_555 A U 20 1_555 A U 4 1_555 A A 19 1_555 -0.818 -1.650 3.249 1.331 7.964 27.933 -4.898 1.899 2.646 16.078 -2.687 29.054 3 AA_A3U4:A19U20_AA A 3 ? A 20 ? A 4 ? A 19 ? 1 A U 4 1_555 A A 19 1_555 A G 5 1_555 A C 18 1_555 0.392 -1.266 3.301 -1.339 11.628 33.398 -3.711 -0.833 2.706 19.503 2.246 35.334 4 AA_U4G5:C18A19_AA A 4 ? A 19 ? A 5 ? A 18 ? 1 A G 5 1_555 A C 18 1_555 A G 6 1_555 A C 17 1_555 0.261 -1.300 3.459 2.564 6.825 35.296 -3.096 -0.048 3.171 11.109 -4.173 36.018 5 AA_G5G6:C17C18_AA A 5 ? A 18 ? A 6 ? A 17 ? 1 A G 6 1_555 A C 17 1_555 A U 7 1_555 A G 16 1_555 1.107 -1.962 3.403 0.800 6.192 36.316 -3.942 -1.643 3.061 9.844 -1.273 36.831 6 AA_G6U7:G16C17_AA A 6 ? A 17 ? A 7 ? A 16 ? 1 A U 7 1_555 A G 16 1_555 A U 8 1_555 A A 15 1_555 -0.145 -1.900 3.005 1.910 5.054 24.423 -5.680 0.822 2.547 11.763 -4.444 25.005 7 AA_U7U8:A15G16_AA A 7 ? A 16 ? A 8 ? A 15 ? 1 A U 8 1_555 A A 15 1_555 A G 9 1_555 A U 14 1_555 -0.118 -1.643 2.669 0.373 11.461 19.009 -7.222 0.403 1.449 31.286 -1.018 22.173 8 AA_U8G9:U14A15_AA A 8 ? A 15 ? A 9 ? A 14 ? #