data_2KDE # _entry.id 2KDE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KDE pdb_00002kde 10.2210/pdb2kde/pdb RCSB RCSB100981 ? ? WWPDB D_1000100981 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 1YX4 PDB 'Structure of S5a bound to monoubiquitin provides a model for polyubiquitin recognition' unspecified 1YX5 PDB 'Solution Structure of S5a UIM-1/Ubiquitin Complex' unspecified 1YX6 PDB 'Solution Structure of S5a UIM-2/Ubiquitin Complex' unspecified 1D3Z PDB 'UBIQUITIN NMR STRUCTURE' unspecified 2KDF PDB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KDE _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-01-06 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, N.' 1 'Wang, Q.' 2 'Ehlinger, A.' 3 'Randles, L.' 4 'Lary, J.W.' 5 'Kang, Y.' 6 'Haririnia, A.' 7 'Cole, J.L.' 8 'Fushman, D.' 9 'Walters, K.J.' 10 # _citation.id primary _citation.title 'Structure of the s5a:k48-linked diubiquitin complex and its interactions with rpn13.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 35 _citation.page_first 280 _citation.page_last 290 _citation.year 2009 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19683493 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2009.06.010 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, N.' 1 ? primary 'Wang, Q.' 2 ? primary 'Ehlinger, A.' 3 ? primary 'Randles, L.' 4 ? primary 'Lary, J.W.' 5 ? primary 'Kang, Y.' 6 ? primary 'Haririnia, A.' 7 ? primary 'Storaska, A.J.' 8 ? primary 'Cole, J.L.' 9 ? primary 'Fushman, D.' 10 ? primary 'Walters, K.J.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '26S proteasome non-ATPase regulatory subunit 4' 11826.878 1 ? ? 'UNP residues 196-306, S5a fragment' ? 2 polymer man Ubiquitin 8576.831 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '26S proteasome regulatory subunit S5A, Rpn10, Multiubiquitin chain-binding protein, Antisecretory factor 1, ASF, AF' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATTGTEDSDDALLKMTISQQEFGRTGL PDLSSMTEEEQIAYAMQMSLQGAEFGQAESA ; ;MLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATTGTEDSDDALLKMTISQQEFGRTGL PDLSSMTEEEQIAYAMQMSLQGAEFGQAESA ; A ? 2 'polypeptide(L)' no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG B,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 GLY n 1 4 LEU n 1 5 GLY n 1 6 ALA n 1 7 SER n 1 8 ASP n 1 9 PHE n 1 10 GLU n 1 11 PHE n 1 12 GLY n 1 13 VAL n 1 14 ASP n 1 15 PRO n 1 16 SER n 1 17 ALA n 1 18 ASP n 1 19 PRO n 1 20 GLU n 1 21 LEU n 1 22 ALA n 1 23 LEU n 1 24 ALA n 1 25 LEU n 1 26 ARG n 1 27 VAL n 1 28 SER n 1 29 MET n 1 30 GLU n 1 31 GLU n 1 32 GLN n 1 33 ARG n 1 34 GLN n 1 35 ARG n 1 36 GLN n 1 37 GLU n 1 38 GLU n 1 39 GLU n 1 40 ALA n 1 41 ARG n 1 42 ARG n 1 43 ALA n 1 44 ALA n 1 45 ALA n 1 46 ALA n 1 47 SER n 1 48 ALA n 1 49 ALA n 1 50 GLU n 1 51 ALA n 1 52 GLY n 1 53 ILE n 1 54 ALA n 1 55 THR n 1 56 THR n 1 57 GLY n 1 58 THR n 1 59 GLU n 1 60 ASP n 1 61 SER n 1 62 ASP n 1 63 ASP n 1 64 ALA n 1 65 LEU n 1 66 LEU n 1 67 LYS n 1 68 MET n 1 69 THR n 1 70 ILE n 1 71 SER n 1 72 GLN n 1 73 GLN n 1 74 GLU n 1 75 PHE n 1 76 GLY n 1 77 ARG n 1 78 THR n 1 79 GLY n 1 80 LEU n 1 81 PRO n 1 82 ASP n 1 83 LEU n 1 84 SER n 1 85 SER n 1 86 MET n 1 87 THR n 1 88 GLU n 1 89 GLU n 1 90 GLU n 1 91 GLN n 1 92 ILE n 1 93 ALA n 1 94 TYR n 1 95 ALA n 1 96 MET n 1 97 GLN n 1 98 MET n 1 99 SER n 1 100 LEU n 1 101 GLN n 1 102 GLY n 1 103 ALA n 1 104 GLU n 1 105 PHE n 1 106 GLY n 1 107 GLN n 1 108 ALA n 1 109 GLU n 1 110 SER n 1 111 ALA n 2 1 MET n 2 2 GLN n 2 3 ILE n 2 4 PHE n 2 5 VAL n 2 6 LYS n 2 7 THR n 2 8 LEU n 2 9 THR n 2 10 GLY n 2 11 LYS n 2 12 THR n 2 13 ILE n 2 14 THR n 2 15 LEU n 2 16 GLU n 2 17 VAL n 2 18 GLU n 2 19 PRO n 2 20 SER n 2 21 ASP n 2 22 THR n 2 23 ILE n 2 24 GLU n 2 25 ASN n 2 26 VAL n 2 27 LYS n 2 28 ALA n 2 29 LYS n 2 30 ILE n 2 31 GLN n 2 32 ASP n 2 33 LYS n 2 34 GLU n 2 35 GLY n 2 36 ILE n 2 37 PRO n 2 38 PRO n 2 39 ASP n 2 40 GLN n 2 41 GLN n 2 42 ARG n 2 43 LEU n 2 44 ILE n 2 45 PHE n 2 46 ALA n 2 47 GLY n 2 48 LYS n 2 49 GLN n 2 50 LEU n 2 51 GLU n 2 52 ASP n 2 53 GLY n 2 54 ARG n 2 55 THR n 2 56 LEU n 2 57 SER n 2 58 ASP n 2 59 TYR n 2 60 ASN n 2 61 ILE n 2 62 GLN n 2 63 LYS n 2 64 GLU n 2 65 SER n 2 66 THR n 2 67 LEU n 2 68 HIS n 2 69 LEU n 2 70 VAL n 2 71 LEU n 2 72 ARG n 2 73 LEU n 2 74 ARG n 2 75 GLY n 2 76 GLY n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? Human ? 'PSMD4, MCB1' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? pET26b ? ? ? ? ? 2 1 sample ? ? ? 'clawed frog,common platanna,platanna' ? ? ? ? ? ? ? ? 'Xenopus laevis' 8355 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? pET3a ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP UBIQ_XENLA P62972 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1 ? 2 UNP PSMD4_HUMAN P55036 1 ;MLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATTGTEDSDDALLKMTISQQEFGRTGL PDLSSMTEEEQIAYAMQMSLQGAEFGQAESA ; 196 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2KDE B 1 ? 76 ? P62972 1 ? 76 ? 1 76 2 1 2KDE C 1 ? 76 ? P62972 1 ? 76 ? 77 152 3 2 2KDE A 1 ? 111 ? P55036 196 ? 306 ? 196 306 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '3D 1H-15N NOESY' 2 2 2 '3D 1H-13C NOESY' 2 3 3 '3D 13C-filtered 1H-13C NOESY' 2 4 4 '3D 13C-filtered 1H-13C NOESY' 2 5 5 '3D 13C-filtered 1H-13C NOESY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 '20 mM NaPO4; 100 mM NaCl' 6.5 ambient ? 298 K 2 '20 mM NaPO4; 50 mM NaCl' 6.5 ambient ? 298 K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.4 mM [U-100% 15N; U-50% 2H] S5a (196-306)-1, 1.2 mM K48 linked diubiquitin-2, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '0.5 mM [U-100% 13C] S5a (196-306)-3, 1.5 mM K48 linked diubiquitin-4, 100% D2O' 2 '100% D2O' ;0.5 mM [U-100% 13C of the proximal Ub; natural abundance of the distal subunit] K48 linked diubiquitin-5, 1.0 mM S5a (196-306)-6, 100% D2O ; 3 '100% D2O' ;0.5 mM [U-100% 13C of the distal subunit; natural abundance of the proximal Ub] K48 linked diubiquitin-7, 1.0 mM S5a (196-306)-8, 100% D2O ; 4 '100% D2O' ;0.4 mM [U-100% 13C] S5a (196-306)-9, 1.2 mM [U-100% 2H of the proximal Ub; natural abundance of the distal subunit] ] K48 linked diubiquitin-10, 100% D2O ; 5 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Varian INOVA 1 'Varian INOVA' 900 Varian INOVA 2 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2KDE _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 30 _pdbx_nmr_ensemble.conformers_submitted_total_number 7 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KDE _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KDE _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bartels et al.' 'data analysis' XEASY ? 1 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 2 Brunger 'structure solution' X-PLOR ? 3 Brunger refinement X-PLOR ? 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KDE _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KDE _struct.title 'NMR structure of major S5a (196-306):K48 linked diubiquitin species' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KDE _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text ;protein complex, ubiquitin interacting motifs, Cytoplasm, Nucleus, Ubl conjugation, Alternative splicing, Phosphoprotein, Proteasome, PROTEIN BINDING ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 14 ? ALA A 17 ? ASP A 209 ALA A 212 5 ? 4 HELX_P HELX_P2 2 ASP A 18 ? GLY A 52 ? ASP A 213 GLY A 247 1 ? 35 HELX_P HELX_P3 3 SER A 61 ? PHE A 75 ? SER A 256 PHE A 270 1 ? 15 HELX_P HELX_P4 4 THR A 87 ? GLY A 102 ? THR A 282 GLY A 297 1 ? 16 HELX_P HELX_P5 5 THR B 22 ? GLU B 34 ? THR B 22 GLU B 34 1 ? 13 HELX_P HELX_P6 6 LEU B 56 ? ASN B 60 ? LEU B 56 ASN B 60 5 ? 5 HELX_P HELX_P7 7 THR C 22 ? GLU C 34 ? THR C 98 GLU C 110 1 ? 13 HELX_P HELX_P8 8 PRO C 37 ? GLN C 41 ? PRO C 113 GLN C 117 5 ? 5 HELX_P HELX_P9 9 LEU C 56 ? ASN C 60 ? LEU C 132 ASN C 136 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 76 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_comp_id LYS _struct_conn.ptnr2_label_seq_id 48 _struct_conn.ptnr2_label_atom_id NZ _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 76 _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id LYS _struct_conn.ptnr2_auth_seq_id 124 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.309 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR B 12 ? GLU B 16 ? THR B 12 GLU B 16 A 2 GLN B 2 ? LYS B 6 ? GLN B 2 LYS B 6 A 3 THR B 66 ? LEU B 71 ? THR B 66 LEU B 71 A 4 GLN B 41 ? ILE B 44 ? GLN B 41 ILE B 44 B 1 THR C 12 ? GLU C 16 ? THR C 88 GLU C 92 B 2 GLN C 2 ? LYS C 6 ? GLN C 78 LYS C 82 B 3 THR C 66 ? VAL C 70 ? THR C 142 VAL C 146 B 4 ARG C 42 ? PHE C 45 ? ARG C 118 PHE C 121 B 5 LYS C 48 ? GLN C 49 ? LYS C 124 GLN C 125 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE B 13 ? O ILE B 13 N VAL B 5 ? N VAL B 5 A 2 3 N LYS B 6 ? N LYS B 6 O LEU B 69 ? O LEU B 69 A 3 4 O HIS B 68 ? O HIS B 68 N ILE B 44 ? N ILE B 44 B 1 2 O LEU C 15 ? O LEU C 91 N ILE C 3 ? N ILE C 79 B 2 3 N PHE C 4 ? N PHE C 80 O LEU C 67 ? O LEU C 143 B 3 4 O VAL C 70 ? O VAL C 146 N ARG C 42 ? N ARG C 118 B 4 5 N PHE C 45 ? N PHE C 121 O LYS C 48 ? O LYS C 124 # _atom_sites.entry_id 2KDE _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 196 196 MET MET A . n A 1 2 LEU 2 197 197 LEU LEU A . n A 1 3 GLY 3 198 198 GLY GLY A . n A 1 4 LEU 4 199 199 LEU LEU A . n A 1 5 GLY 5 200 200 GLY GLY A . n A 1 6 ALA 6 201 201 ALA ALA A . n A 1 7 SER 7 202 202 SER SER A . n A 1 8 ASP 8 203 203 ASP ASP A . n A 1 9 PHE 9 204 204 PHE PHE A . n A 1 10 GLU 10 205 205 GLU GLU A . n A 1 11 PHE 11 206 206 PHE PHE A . n A 1 12 GLY 12 207 207 GLY GLY A . n A 1 13 VAL 13 208 208 VAL VAL A . n A 1 14 ASP 14 209 209 ASP ASP A . n A 1 15 PRO 15 210 210 PRO PRO A . n A 1 16 SER 16 211 211 SER SER A . n A 1 17 ALA 17 212 212 ALA ALA A . n A 1 18 ASP 18 213 213 ASP ASP A . n A 1 19 PRO 19 214 214 PRO PRO A . n A 1 20 GLU 20 215 215 GLU GLU A . n A 1 21 LEU 21 216 216 LEU LEU A . n A 1 22 ALA 22 217 217 ALA ALA A . n A 1 23 LEU 23 218 218 LEU LEU A . n A 1 24 ALA 24 219 219 ALA ALA A . n A 1 25 LEU 25 220 220 LEU LEU A . n A 1 26 ARG 26 221 221 ARG ARG A . n A 1 27 VAL 27 222 222 VAL VAL A . n A 1 28 SER 28 223 223 SER SER A . n A 1 29 MET 29 224 224 MET MET A . n A 1 30 GLU 30 225 225 GLU GLU A . n A 1 31 GLU 31 226 226 GLU GLU A . n A 1 32 GLN 32 227 227 GLN GLN A . n A 1 33 ARG 33 228 228 ARG ARG A . n A 1 34 GLN 34 229 229 GLN GLN A . n A 1 35 ARG 35 230 230 ARG ARG A . n A 1 36 GLN 36 231 231 GLN GLN A . n A 1 37 GLU 37 232 232 GLU GLU A . n A 1 38 GLU 38 233 233 GLU GLU A . n A 1 39 GLU 39 234 234 GLU GLU A . n A 1 40 ALA 40 235 235 ALA ALA A . n A 1 41 ARG 41 236 236 ARG ARG A . n A 1 42 ARG 42 237 237 ARG ARG A . n A 1 43 ALA 43 238 238 ALA ALA A . n A 1 44 ALA 44 239 239 ALA ALA A . n A 1 45 ALA 45 240 240 ALA ALA A . n A 1 46 ALA 46 241 241 ALA ALA A . n A 1 47 SER 47 242 242 SER SER A . n A 1 48 ALA 48 243 243 ALA ALA A . n A 1 49 ALA 49 244 244 ALA ALA A . n A 1 50 GLU 50 245 245 GLU GLU A . n A 1 51 ALA 51 246 246 ALA ALA A . n A 1 52 GLY 52 247 247 GLY GLY A . n A 1 53 ILE 53 248 248 ILE ILE A . n A 1 54 ALA 54 249 249 ALA ALA A . n A 1 55 THR 55 250 250 THR THR A . n A 1 56 THR 56 251 251 THR THR A . n A 1 57 GLY 57 252 252 GLY GLY A . n A 1 58 THR 58 253 253 THR THR A . n A 1 59 GLU 59 254 254 GLU GLU A . n A 1 60 ASP 60 255 255 ASP ASP A . n A 1 61 SER 61 256 256 SER SER A . n A 1 62 ASP 62 257 257 ASP ASP A . n A 1 63 ASP 63 258 258 ASP ASP A . n A 1 64 ALA 64 259 259 ALA ALA A . n A 1 65 LEU 65 260 260 LEU LEU A . n A 1 66 LEU 66 261 261 LEU LEU A . n A 1 67 LYS 67 262 262 LYS LYS A . n A 1 68 MET 68 263 263 MET MET A . n A 1 69 THR 69 264 264 THR THR A . n A 1 70 ILE 70 265 265 ILE ILE A . n A 1 71 SER 71 266 266 SER SER A . n A 1 72 GLN 72 267 267 GLN GLN A . n A 1 73 GLN 73 268 268 GLN GLN A . n A 1 74 GLU 74 269 269 GLU GLU A . n A 1 75 PHE 75 270 270 PHE PHE A . n A 1 76 GLY 76 271 271 GLY GLY A . n A 1 77 ARG 77 272 272 ARG ARG A . n A 1 78 THR 78 273 273 THR THR A . n A 1 79 GLY 79 274 274 GLY GLY A . n A 1 80 LEU 80 275 275 LEU LEU A . n A 1 81 PRO 81 276 276 PRO PRO A . n A 1 82 ASP 82 277 277 ASP ASP A . n A 1 83 LEU 83 278 278 LEU LEU A . n A 1 84 SER 84 279 279 SER SER A . n A 1 85 SER 85 280 280 SER SER A . n A 1 86 MET 86 281 281 MET MET A . n A 1 87 THR 87 282 282 THR THR A . n A 1 88 GLU 88 283 283 GLU GLU A . n A 1 89 GLU 89 284 284 GLU GLU A . n A 1 90 GLU 90 285 285 GLU GLU A . n A 1 91 GLN 91 286 286 GLN GLN A . n A 1 92 ILE 92 287 287 ILE ILE A . n A 1 93 ALA 93 288 288 ALA ALA A . n A 1 94 TYR 94 289 289 TYR TYR A . n A 1 95 ALA 95 290 290 ALA ALA A . n A 1 96 MET 96 291 291 MET MET A . n A 1 97 GLN 97 292 292 GLN GLN A . n A 1 98 MET 98 293 293 MET MET A . n A 1 99 SER 99 294 294 SER SER A . n A 1 100 LEU 100 295 295 LEU LEU A . n A 1 101 GLN 101 296 296 GLN GLN A . n A 1 102 GLY 102 297 297 GLY GLY A . n A 1 103 ALA 103 298 298 ALA ALA A . n A 1 104 GLU 104 299 299 GLU GLU A . n A 1 105 PHE 105 300 300 PHE PHE A . n A 1 106 GLY 106 301 301 GLY GLY A . n A 1 107 GLN 107 302 302 GLN GLN A . n A 1 108 ALA 108 303 303 ALA ALA A . n A 1 109 GLU 109 304 304 GLU GLU A . n A 1 110 SER 110 305 305 SER SER A . n A 1 111 ALA 111 306 306 ALA ALA A . n B 2 1 MET 1 1 1 MET MET B . n B 2 2 GLN 2 2 2 GLN GLN B . n B 2 3 ILE 3 3 3 ILE ILE B . n B 2 4 PHE 4 4 4 PHE PHE B . n B 2 5 VAL 5 5 5 VAL VAL B . n B 2 6 LYS 6 6 6 LYS LYS B . n B 2 7 THR 7 7 7 THR THR B . n B 2 8 LEU 8 8 8 LEU LEU B . n B 2 9 THR 9 9 9 THR THR B . n B 2 10 GLY 10 10 10 GLY GLY B . n B 2 11 LYS 11 11 11 LYS LYS B . n B 2 12 THR 12 12 12 THR THR B . n B 2 13 ILE 13 13 13 ILE ILE B . n B 2 14 THR 14 14 14 THR THR B . n B 2 15 LEU 15 15 15 LEU LEU B . n B 2 16 GLU 16 16 16 GLU GLU B . n B 2 17 VAL 17 17 17 VAL VAL B . n B 2 18 GLU 18 18 18 GLU GLU B . n B 2 19 PRO 19 19 19 PRO PRO B . n B 2 20 SER 20 20 20 SER SER B . n B 2 21 ASP 21 21 21 ASP ASP B . n B 2 22 THR 22 22 22 THR THR B . n B 2 23 ILE 23 23 23 ILE ILE B . n B 2 24 GLU 24 24 24 GLU GLU B . n B 2 25 ASN 25 25 25 ASN ASN B . n B 2 26 VAL 26 26 26 VAL VAL B . n B 2 27 LYS 27 27 27 LYS LYS B . n B 2 28 ALA 28 28 28 ALA ALA B . n B 2 29 LYS 29 29 29 LYS LYS B . n B 2 30 ILE 30 30 30 ILE ILE B . n B 2 31 GLN 31 31 31 GLN GLN B . n B 2 32 ASP 32 32 32 ASP ASP B . n B 2 33 LYS 33 33 33 LYS LYS B . n B 2 34 GLU 34 34 34 GLU GLU B . n B 2 35 GLY 35 35 35 GLY GLY B . n B 2 36 ILE 36 36 36 ILE ILE B . n B 2 37 PRO 37 37 37 PRO PRO B . n B 2 38 PRO 38 38 38 PRO PRO B . n B 2 39 ASP 39 39 39 ASP ASP B . n B 2 40 GLN 40 40 40 GLN GLN B . n B 2 41 GLN 41 41 41 GLN GLN B . n B 2 42 ARG 42 42 42 ARG ARG B . n B 2 43 LEU 43 43 43 LEU LEU B . n B 2 44 ILE 44 44 44 ILE ILE B . n B 2 45 PHE 45 45 45 PHE PHE B . n B 2 46 ALA 46 46 46 ALA ALA B . n B 2 47 GLY 47 47 47 GLY GLY B . n B 2 48 LYS 48 48 48 LYS LYS B . n B 2 49 GLN 49 49 49 GLN GLN B . n B 2 50 LEU 50 50 50 LEU LEU B . n B 2 51 GLU 51 51 51 GLU GLU B . n B 2 52 ASP 52 52 52 ASP ASP B . n B 2 53 GLY 53 53 53 GLY GLY B . n B 2 54 ARG 54 54 54 ARG ARG B . n B 2 55 THR 55 55 55 THR THR B . n B 2 56 LEU 56 56 56 LEU LEU B . n B 2 57 SER 57 57 57 SER SER B . n B 2 58 ASP 58 58 58 ASP ASP B . n B 2 59 TYR 59 59 59 TYR TYR B . n B 2 60 ASN 60 60 60 ASN ASN B . n B 2 61 ILE 61 61 61 ILE ILE B . n B 2 62 GLN 62 62 62 GLN GLN B . n B 2 63 LYS 63 63 63 LYS LYS B . n B 2 64 GLU 64 64 64 GLU GLU B . n B 2 65 SER 65 65 65 SER SER B . n B 2 66 THR 66 66 66 THR THR B . n B 2 67 LEU 67 67 67 LEU LEU B . n B 2 68 HIS 68 68 68 HIS HIS B . n B 2 69 LEU 69 69 69 LEU LEU B . n B 2 70 VAL 70 70 70 VAL VAL B . n B 2 71 LEU 71 71 71 LEU LEU B . n B 2 72 ARG 72 72 72 ARG ARG B . n B 2 73 LEU 73 73 73 LEU LEU B . n B 2 74 ARG 74 74 74 ARG ARG B . n B 2 75 GLY 75 75 75 GLY GLY B . n B 2 76 GLY 76 76 76 GLY GLY B . n C 2 1 MET 1 77 77 MET MET C . n C 2 2 GLN 2 78 78 GLN GLN C . n C 2 3 ILE 3 79 79 ILE ILE C . n C 2 4 PHE 4 80 80 PHE PHE C . n C 2 5 VAL 5 81 81 VAL VAL C . n C 2 6 LYS 6 82 82 LYS LYS C . n C 2 7 THR 7 83 83 THR THR C . n C 2 8 LEU 8 84 84 LEU LEU C . n C 2 9 THR 9 85 85 THR THR C . n C 2 10 GLY 10 86 86 GLY GLY C . n C 2 11 LYS 11 87 87 LYS LYS C . n C 2 12 THR 12 88 88 THR THR C . n C 2 13 ILE 13 89 89 ILE ILE C . n C 2 14 THR 14 90 90 THR THR C . n C 2 15 LEU 15 91 91 LEU LEU C . n C 2 16 GLU 16 92 92 GLU GLU C . n C 2 17 VAL 17 93 93 VAL VAL C . n C 2 18 GLU 18 94 94 GLU GLU C . n C 2 19 PRO 19 95 95 PRO PRO C . n C 2 20 SER 20 96 96 SER SER C . n C 2 21 ASP 21 97 97 ASP ASP C . n C 2 22 THR 22 98 98 THR THR C . n C 2 23 ILE 23 99 99 ILE ILE C . n C 2 24 GLU 24 100 100 GLU GLU C . n C 2 25 ASN 25 101 101 ASN ASN C . n C 2 26 VAL 26 102 102 VAL VAL C . n C 2 27 LYS 27 103 103 LYS LYS C . n C 2 28 ALA 28 104 104 ALA ALA C . n C 2 29 LYS 29 105 105 LYS LYS C . n C 2 30 ILE 30 106 106 ILE ILE C . n C 2 31 GLN 31 107 107 GLN GLN C . n C 2 32 ASP 32 108 108 ASP ASP C . n C 2 33 LYS 33 109 109 LYS LYS C . n C 2 34 GLU 34 110 110 GLU GLU C . n C 2 35 GLY 35 111 111 GLY GLY C . n C 2 36 ILE 36 112 112 ILE ILE C . n C 2 37 PRO 37 113 113 PRO PRO C . n C 2 38 PRO 38 114 114 PRO PRO C . n C 2 39 ASP 39 115 115 ASP ASP C . n C 2 40 GLN 40 116 116 GLN GLN C . n C 2 41 GLN 41 117 117 GLN GLN C . n C 2 42 ARG 42 118 118 ARG ARG C . n C 2 43 LEU 43 119 119 LEU LEU C . n C 2 44 ILE 44 120 120 ILE ILE C . n C 2 45 PHE 45 121 121 PHE PHE C . n C 2 46 ALA 46 122 122 ALA ALA C . n C 2 47 GLY 47 123 123 GLY GLY C . n C 2 48 LYS 48 124 124 LYS LYS C . n C 2 49 GLN 49 125 125 GLN GLN C . n C 2 50 LEU 50 126 126 LEU LEU C . n C 2 51 GLU 51 127 127 GLU GLU C . n C 2 52 ASP 52 128 128 ASP ASP C . n C 2 53 GLY 53 129 129 GLY GLY C . n C 2 54 ARG 54 130 130 ARG ARG C . n C 2 55 THR 55 131 131 THR THR C . n C 2 56 LEU 56 132 132 LEU LEU C . n C 2 57 SER 57 133 133 SER SER C . n C 2 58 ASP 58 134 134 ASP ASP C . n C 2 59 TYR 59 135 135 TYR TYR C . n C 2 60 ASN 60 136 136 ASN ASN C . n C 2 61 ILE 61 137 137 ILE ILE C . n C 2 62 GLN 62 138 138 GLN GLN C . n C 2 63 LYS 63 139 139 LYS LYS C . n C 2 64 GLU 64 140 140 GLU GLU C . n C 2 65 SER 65 141 141 SER SER C . n C 2 66 THR 66 142 142 THR THR C . n C 2 67 LEU 67 143 143 LEU LEU C . n C 2 68 HIS 68 144 144 HIS HIS C . n C 2 69 LEU 69 145 145 LEU LEU C . n C 2 70 VAL 70 146 146 VAL VAL C . n C 2 71 LEU 71 147 147 LEU LEU C . n C 2 72 ARG 72 148 148 ARG ARG C . n C 2 73 LEU 73 149 149 LEU LEU C . n C 2 74 ARG 74 150 150 ARG ARG C . n C 2 75 GLY 75 151 151 GLY GLY C . n C 2 76 GLY 76 152 152 GLY GLY C . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-09-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_struct_assembly 3 3 'Structure model' pdbx_struct_oper_list 4 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'S5a (196-306)-1' 0.4 ? mM '[U-100% 15N; U-50% 2H]' 1 'K48 linked diubiquitin-2' 1.2 ? mM ? 1 'S5a (196-306)-3' 0.5 ? mM '[U-100% 13C]' 2 'K48 linked diubiquitin-4' 1.5 ? mM ? 2 'K48 linked diubiquitin-5' 0.5 ? mM '[U-100% 13C of the proximal Ub; natural abundance of the distal subunit]' 3 'S5a (196-306)-6' 1.0 ? mM ? 3 'K48 linked diubiquitin-7' 0.5 ? mM '[U-100% 13C of the distal subunit; natural abundance of the proximal Ub]' 4 'S5a (196-306)-8' 1.0 ? mM ? 4 'S5a (196-306)-9' 0.4 ? mM '[U-100% 13C]' 5 'K48 linked diubiquitin-10' 1.2 ? mM '[U-100% 2H of the proximal Ub; natural abundance of the distal subunit] ]' 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 199 ? ? 52.55 86.37 2 1 ALA A 201 ? ? -91.88 50.31 3 1 SER A 202 ? ? -135.83 -44.43 4 1 PHE A 206 ? ? -162.81 -44.31 5 1 VAL A 208 ? ? -135.29 -40.64 6 1 ALA A 246 ? ? -145.37 56.23 7 1 ASP A 255 ? ? -115.31 51.20 8 1 THR A 273 ? ? -140.28 34.64 9 1 LEU A 275 ? ? -171.10 147.98 10 1 THR A 282 ? ? -72.30 -158.78 11 1 ALA A 298 ? ? -95.20 48.36 12 1 PHE A 300 ? ? -120.88 -59.73 13 1 GLN A 302 ? ? -141.50 49.62 14 1 THR B 7 ? ? -110.42 -166.32 15 1 THR B 55 ? ? -106.88 -169.52 16 1 GLN B 62 ? ? -119.71 -167.23 17 1 ARG B 74 ? ? -97.23 52.59 18 1 THR C 131 ? ? -108.15 -169.71 19 1 GLN C 138 ? ? -102.60 -165.79 20 2 ALA A 201 ? ? -160.06 -57.05 21 2 PHE A 204 ? ? -97.77 -61.45 22 2 GLU A 205 ? ? 51.65 70.64 23 2 VAL A 208 ? ? -122.47 -69.07 24 2 ASP A 213 ? ? -171.39 118.54 25 2 ILE A 248 ? ? -131.62 -40.37 26 2 ALA A 249 ? ? -123.88 -168.34 27 2 GLU A 254 ? ? -153.82 44.46 28 2 THR A 273 ? ? -151.31 35.29 29 2 LEU A 275 ? ? -171.45 147.99 30 2 MET A 281 ? ? -78.99 -164.37 31 2 THR A 282 ? ? -147.01 -156.16 32 2 ALA A 298 ? ? -146.39 51.45 33 2 PHE A 300 ? ? -166.62 81.19 34 2 GLU A 304 ? ? -167.99 102.20 35 2 VAL B 17 ? ? -112.64 -163.51 36 2 THR C 83 ? ? -122.06 -165.59 37 2 THR C 85 ? ? -140.49 28.20 38 2 VAL C 93 ? ? -111.85 -162.40 39 2 THR C 131 ? ? -105.25 -168.01 40 2 GLN C 138 ? ? -104.90 -168.74 41 3 GLU A 205 ? ? -150.16 45.61 42 3 PHE A 206 ? ? -161.97 -46.41 43 3 VAL A 208 ? ? -134.84 -40.58 44 3 ASP A 213 ? ? -169.79 118.09 45 3 ILE A 248 ? ? -115.21 74.42 46 3 ASP A 255 ? ? -140.83 27.89 47 3 PHE A 270 ? ? -116.07 76.78 48 3 LEU A 275 ? ? -171.36 148.03 49 3 THR A 282 ? ? -71.48 -157.63 50 3 ALA A 298 ? ? -141.20 48.06 51 3 GLN A 302 ? ? -106.99 56.24 52 3 VAL B 17 ? ? -121.40 -162.54 53 3 THR B 55 ? ? -106.70 -169.51 54 3 GLN B 62 ? ? -109.98 -165.98 55 3 THR C 83 ? ? -116.93 -164.34 56 3 THR C 131 ? ? -108.97 -169.04 57 3 GLN C 138 ? ? -113.35 -168.74 58 3 ARG C 150 ? ? -160.47 114.19 59 4 GLU A 205 ? ? -109.56 65.15 60 4 PHE A 206 ? ? -169.11 -42.22 61 4 VAL A 208 ? ? -137.05 -40.84 62 4 ASP A 213 ? ? -163.70 114.79 63 4 GLU A 245 ? ? -130.44 -45.01 64 4 THR A 251 ? ? -138.34 -45.31 65 4 ASP A 255 ? ? -97.49 -62.96 66 4 PHE A 270 ? ? -114.96 77.18 67 4 THR A 273 ? ? -150.55 31.17 68 4 LEU A 275 ? ? -171.67 148.46 69 4 THR A 282 ? ? -76.02 -163.10 70 4 GLN A 296 ? ? -109.42 40.20 71 4 ALA A 298 ? ? -167.41 113.44 72 4 PHE A 300 ? ? -133.68 -44.62 73 4 GLN A 302 ? ? 52.57 78.57 74 4 THR B 7 ? ? -122.71 -164.72 75 4 VAL B 17 ? ? -108.13 -161.79 76 4 THR B 55 ? ? -110.19 -167.39 77 4 THR C 83 ? ? -103.44 -167.38 78 4 VAL C 93 ? ? -103.80 -161.67 79 4 THR C 131 ? ? -108.33 -169.06 80 5 GLU A 205 ? ? -140.32 28.48 81 5 PHE A 206 ? ? -168.94 -41.38 82 5 ASP A 213 ? ? -170.37 120.91 83 5 ALA A 246 ? ? -150.31 21.88 84 5 ILE A 248 ? ? -103.56 65.16 85 5 ALA A 249 ? ? -164.47 -165.48 86 5 LEU A 275 ? ? -171.38 147.48 87 5 THR A 282 ? ? -76.55 -160.29 88 5 PHE A 300 ? ? -116.81 51.65 89 5 GLN A 302 ? ? -91.32 49.02 90 5 ALA A 303 ? ? -90.84 -64.32 91 5 THR B 7 ? ? -112.84 -165.71 92 5 THR B 55 ? ? -108.99 -168.94 93 5 THR C 85 ? ? -142.30 28.10 94 5 VAL C 93 ? ? -110.58 -163.24 95 6 SER A 202 ? ? -161.99 -42.90 96 6 PHE A 206 ? ? -167.29 -41.56 97 6 VAL A 208 ? ? -134.33 -40.71 98 6 ASP A 213 ? ? -166.09 116.90 99 6 THR A 282 ? ? -79.11 -163.92 100 6 ALA A 298 ? ? -141.51 53.98 101 6 GLU A 299 ? ? -148.03 44.80 102 6 SER A 305 ? ? -157.42 -59.34 103 6 THR B 7 ? ? -121.18 -164.45 104 6 THR B 9 ? ? -140.13 26.79 105 6 VAL B 17 ? ? -111.18 -162.80 106 6 THR B 55 ? ? -107.30 -168.15 107 6 ARG B 74 ? ? -167.14 93.31 108 6 LEU C 84 ? ? -97.80 30.11 109 6 GLN C 138 ? ? -125.61 -164.85 110 7 ALA A 201 ? ? -143.66 31.03 111 7 PHE A 206 ? ? -168.07 -51.48 112 7 VAL A 208 ? ? -156.92 -40.81 113 7 ASP A 213 ? ? -167.47 116.56 114 7 GLU A 245 ? ? -135.10 -44.60 115 7 GLU A 254 ? ? -98.75 39.48 116 7 ASP A 255 ? ? -143.18 28.91 117 7 SER A 256 ? ? -137.76 -63.80 118 7 LEU A 275 ? ? -171.58 148.46 119 7 THR A 282 ? ? -73.60 -161.36 120 7 ALA A 298 ? ? -167.78 49.19 121 7 PHE A 300 ? ? -140.12 38.62 122 7 ALA A 303 ? ? -165.20 109.12 123 7 GLU A 304 ? ? -139.75 -64.92 124 7 LYS B 48 ? ? -160.42 112.42 125 7 THR B 55 ? ? -108.35 -169.29 126 7 GLN B 62 ? ? -92.67 -159.40 127 7 ARG B 74 ? ? -164.15 31.31 128 7 THR C 83 ? ? -117.59 -165.09 129 7 VAL C 93 ? ? -124.71 -160.87 130 7 THR C 131 ? ? -107.94 -169.13 131 7 LEU C 149 ? ? -123.44 -168.58 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 221 ? ? 0.296 'SIDE CHAIN' 2 1 ARG A 228 ? ? 0.318 'SIDE CHAIN' 3 1 ARG A 230 ? ? 0.317 'SIDE CHAIN' 4 1 ARG A 236 ? ? 0.265 'SIDE CHAIN' 5 1 ARG A 237 ? ? 0.266 'SIDE CHAIN' 6 1 ARG A 272 ? ? 0.231 'SIDE CHAIN' 7 1 ARG B 42 ? ? 0.259 'SIDE CHAIN' 8 1 ARG B 54 ? ? 0.270 'SIDE CHAIN' 9 1 ARG B 72 ? ? 0.286 'SIDE CHAIN' 10 1 ARG B 74 ? ? 0.316 'SIDE CHAIN' 11 1 ARG C 118 ? ? 0.311 'SIDE CHAIN' 12 1 ARG C 130 ? ? 0.267 'SIDE CHAIN' 13 1 ARG C 148 ? ? 0.315 'SIDE CHAIN' 14 1 ARG C 150 ? ? 0.309 'SIDE CHAIN' 15 2 ARG A 221 ? ? 0.238 'SIDE CHAIN' 16 2 ARG A 228 ? ? 0.312 'SIDE CHAIN' 17 2 ARG A 230 ? ? 0.314 'SIDE CHAIN' 18 2 ARG A 236 ? ? 0.288 'SIDE CHAIN' 19 2 ARG A 237 ? ? 0.289 'SIDE CHAIN' 20 2 ARG A 272 ? ? 0.300 'SIDE CHAIN' 21 2 ARG B 42 ? ? 0.303 'SIDE CHAIN' 22 2 ARG B 54 ? ? 0.302 'SIDE CHAIN' 23 2 ARG B 72 ? ? 0.231 'SIDE CHAIN' 24 2 ARG B 74 ? ? 0.262 'SIDE CHAIN' 25 2 ARG C 118 ? ? 0.249 'SIDE CHAIN' 26 2 ARG C 130 ? ? 0.301 'SIDE CHAIN' 27 2 ARG C 148 ? ? 0.317 'SIDE CHAIN' 28 2 ARG C 150 ? ? 0.317 'SIDE CHAIN' 29 3 ARG A 221 ? ? 0.269 'SIDE CHAIN' 30 3 ARG A 228 ? ? 0.284 'SIDE CHAIN' 31 3 ARG A 230 ? ? 0.311 'SIDE CHAIN' 32 3 ARG A 236 ? ? 0.317 'SIDE CHAIN' 33 3 ARG A 237 ? ? 0.317 'SIDE CHAIN' 34 3 ARG A 272 ? ? 0.315 'SIDE CHAIN' 35 3 ARG B 42 ? ? 0.282 'SIDE CHAIN' 36 3 ARG B 54 ? ? 0.317 'SIDE CHAIN' 37 3 ARG B 72 ? ? 0.301 'SIDE CHAIN' 38 3 ARG B 74 ? ? 0.312 'SIDE CHAIN' 39 3 ARG C 118 ? ? 0.284 'SIDE CHAIN' 40 3 ARG C 130 ? ? 0.228 'SIDE CHAIN' 41 3 ARG C 148 ? ? 0.316 'SIDE CHAIN' 42 3 ARG C 150 ? ? 0.280 'SIDE CHAIN' 43 4 ARG A 221 ? ? 0.272 'SIDE CHAIN' 44 4 ARG A 228 ? ? 0.235 'SIDE CHAIN' 45 4 ARG A 230 ? ? 0.286 'SIDE CHAIN' 46 4 ARG A 236 ? ? 0.282 'SIDE CHAIN' 47 4 ARG A 237 ? ? 0.290 'SIDE CHAIN' 48 4 ARG A 272 ? ? 0.317 'SIDE CHAIN' 49 4 ARG B 42 ? ? 0.280 'SIDE CHAIN' 50 4 ARG B 54 ? ? 0.256 'SIDE CHAIN' 51 4 ARG B 72 ? ? 0.317 'SIDE CHAIN' 52 4 ARG B 74 ? ? 0.292 'SIDE CHAIN' 53 4 ARG C 118 ? ? 0.316 'SIDE CHAIN' 54 4 ARG C 130 ? ? 0.292 'SIDE CHAIN' 55 4 ARG C 148 ? ? 0.309 'SIDE CHAIN' 56 4 ARG C 150 ? ? 0.251 'SIDE CHAIN' 57 5 ARG A 221 ? ? 0.315 'SIDE CHAIN' 58 5 ARG A 228 ? ? 0.239 'SIDE CHAIN' 59 5 ARG A 230 ? ? 0.257 'SIDE CHAIN' 60 5 ARG A 236 ? ? 0.268 'SIDE CHAIN' 61 5 ARG A 237 ? ? 0.305 'SIDE CHAIN' 62 5 ARG A 272 ? ? 0.287 'SIDE CHAIN' 63 5 ARG B 42 ? ? 0.318 'SIDE CHAIN' 64 5 ARG B 54 ? ? 0.232 'SIDE CHAIN' 65 5 ARG B 72 ? ? 0.219 'SIDE CHAIN' 66 5 ARG B 74 ? ? 0.312 'SIDE CHAIN' 67 5 ARG C 118 ? ? 0.249 'SIDE CHAIN' 68 5 ARG C 130 ? ? 0.312 'SIDE CHAIN' 69 5 ARG C 148 ? ? 0.293 'SIDE CHAIN' 70 5 ARG C 150 ? ? 0.255 'SIDE CHAIN' 71 6 ARG A 221 ? ? 0.317 'SIDE CHAIN' 72 6 ARG A 228 ? ? 0.247 'SIDE CHAIN' 73 6 ARG A 230 ? ? 0.241 'SIDE CHAIN' 74 6 ARG A 236 ? ? 0.228 'SIDE CHAIN' 75 6 ARG A 237 ? ? 0.212 'SIDE CHAIN' 76 6 ARG A 272 ? ? 0.273 'SIDE CHAIN' 77 6 ARG B 42 ? ? 0.237 'SIDE CHAIN' 78 6 ARG B 54 ? ? 0.316 'SIDE CHAIN' 79 6 ARG B 72 ? ? 0.288 'SIDE CHAIN' 80 6 ARG B 74 ? ? 0.316 'SIDE CHAIN' 81 6 ARG C 118 ? ? 0.258 'SIDE CHAIN' 82 6 ARG C 130 ? ? 0.254 'SIDE CHAIN' 83 6 ARG C 148 ? ? 0.259 'SIDE CHAIN' 84 6 ARG C 150 ? ? 0.316 'SIDE CHAIN' 85 7 ARG A 221 ? ? 0.293 'SIDE CHAIN' 86 7 ARG A 228 ? ? 0.318 'SIDE CHAIN' 87 7 ARG A 230 ? ? 0.241 'SIDE CHAIN' 88 7 ARG A 236 ? ? 0.311 'SIDE CHAIN' 89 7 ARG A 237 ? ? 0.239 'SIDE CHAIN' 90 7 ARG A 272 ? ? 0.216 'SIDE CHAIN' 91 7 ARG B 42 ? ? 0.315 'SIDE CHAIN' 92 7 ARG B 54 ? ? 0.296 'SIDE CHAIN' 93 7 ARG B 72 ? ? 0.213 'SIDE CHAIN' 94 7 ARG B 74 ? ? 0.239 'SIDE CHAIN' 95 7 ARG C 118 ? ? 0.224 'SIDE CHAIN' 96 7 ARG C 130 ? ? 0.316 'SIDE CHAIN' 97 7 ARG C 148 ? ? 0.305 'SIDE CHAIN' 98 7 ARG C 150 ? ? 0.297 'SIDE CHAIN' #