HEADER PROTEIN TRANSPORT 19-JAN-09 2KDT TITLE PC1/3 DCSG SORTING DOMAIN STRUCTURE IN DPC COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROENDOCRINE CONVERTASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DCSG SORTING DOMAIN; COMPND 5 SYNONYM: NEC 1, PROHORMONE CONVERTASE 1, PROPROTEIN CONVERTASE 1, COMPND 6 PC1, PC3, FURIN HOMOLOG, PROPEPTIDE-PROCESSING PROTEASE; COMPND 7 EC: 3.4.21.93; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PCSK1, ATT-1, NEC-1, NEC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-2T KEYWDS SECRETORY GRANULES, PROHORME CONVERTASE, CALCIUM, CLEAVAGE ON PAIR OF KEYWDS 2 BASIC RESIDUES, CYTOPLASMIC VESICLE, GLYCOPROTEIN, HYDROLASE, KEYWDS 3 PROTEASE, SERINE PROTEASE, ZYMOGEN, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.D.DIKEAKOS,P.DI LELLO,M.J.LACOMBE,R.GHIRLANDO,P.LEGAULT, AUTHOR 2 T.L.REUDELHUBER,J.G.OMICHINSKI REVDAT 3 16-MAR-22 2KDT 1 REMARK SEQADV REVDAT 2 30-JUN-09 2KDT 1 JRNL REVDAT 1 07-APR-09 2KDT 0 JRNL AUTH J.D.DIKEAKOS,P.DI LELLO,M.J.LACOMBE,R.GHIRLANDO,P.LEGAULT, JRNL AUTH 2 T.L.REUDELHUBER,J.G.OMICHINSKI JRNL TITL FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF A DENSE CORE JRNL TITL 2 SECRETORY GRANULE SORTING DOMAIN FROM THE PC1/3 PROTEASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 7408 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19376969 JRNL DOI 10.1073/PNAS.0809576106 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KDT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000100996. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 15N] PC1/3 DCSG REMARK 210 -SORTING DOMAIN, 1 MM [U-100% REMARK 210 13C; U-100% 15N] PC1/3 DCSG- REMARK 210 SORTING DOMAIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D HBHA(CO)NH; REMARK 210 3D HN(CO)CA; 3D HCCH-TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, VNMR REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 709 REMARK 465 SER A 710 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 713 52.36 -176.53 REMARK 500 1 GLU A 714 95.35 -176.55 REMARK 500 1 SER A 719 82.25 45.55 REMARK 500 1 LYS A 732 -56.56 -179.67 REMARK 500 1 HIS A 736 -73.78 -157.68 REMARK 500 1 ARG A 737 -67.67 68.74 REMARK 500 1 ASP A 739 85.40 -61.39 REMARK 500 1 GLU A 752 81.69 -156.49 REMARK 500 2 LYS A 712 -69.20 68.33 REMARK 500 2 GLU A 714 92.49 61.31 REMARK 500 2 SER A 716 50.06 -145.39 REMARK 500 2 SER A 719 89.60 -162.44 REMARK 500 2 ASN A 730 36.74 -99.55 REMARK 500 2 THR A 731 57.22 -103.84 REMARK 500 2 LYS A 732 -56.52 -179.82 REMARK 500 2 ARG A 737 78.76 60.74 REMARK 500 2 ASP A 739 88.02 -59.65 REMARK 500 2 GLU A 751 58.65 -159.05 REMARK 500 3 LYS A 712 76.65 -67.02 REMARK 500 3 LEU A 713 100.72 60.33 REMARK 500 3 GLU A 714 84.44 61.22 REMARK 500 3 SER A 719 89.41 -161.95 REMARK 500 3 LYS A 732 -56.12 179.62 REMARK 500 3 ASP A 739 -53.21 -176.48 REMARK 500 4 GLU A 714 81.43 -177.08 REMARK 500 4 SER A 716 88.01 59.70 REMARK 500 4 GLU A 717 39.09 -142.11 REMARK 500 4 SER A 719 83.03 45.59 REMARK 500 4 TYR A 734 -51.57 -148.19 REMARK 500 4 ASP A 738 169.17 59.43 REMARK 500 4 ASP A 739 -75.64 -176.58 REMARK 500 4 ARG A 740 -68.44 68.22 REMARK 500 4 GLU A 751 39.20 -156.92 REMARK 500 4 GLU A 752 82.37 45.44 REMARK 500 5 GLU A 714 95.59 -177.05 REMARK 500 5 SER A 719 89.40 -162.83 REMARK 500 5 TYR A 734 -48.36 -134.89 REMARK 500 5 ASP A 739 37.43 -176.51 REMARK 500 6 LEU A 713 39.98 -173.95 REMARK 500 6 GLU A 714 92.10 60.84 REMARK 500 6 SER A 716 77.87 60.09 REMARK 500 6 GLU A 717 38.91 -149.46 REMARK 500 6 SER A 719 78.29 -164.56 REMARK 500 6 ASN A 730 -65.93 69.38 REMARK 500 6 PRO A 733 58.33 -92.53 REMARK 500 6 ARG A 737 -67.57 -169.99 REMARK 500 6 ASP A 738 147.66 62.63 REMARK 500 6 ASP A 739 -65.63 -177.26 REMARK 500 6 GLU A 752 82.29 45.60 REMARK 500 7 SER A 719 83.55 46.24 REMARK 500 REMARK 500 THIS ENTRY HAS 176 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KDT A 711 753 UNP P63239 NEC1_MOUSE 711 753 SEQADV 2KDT GLY A 709 UNP P63239 EXPRESSION TAG SEQADV 2KDT SER A 710 UNP P63239 EXPRESSION TAG SEQRES 1 A 45 GLY SER SER LYS LEU GLU GLY SER GLU ASP SER LEU TYR SEQRES 2 A 45 SER ASP TYR VAL ASP VAL PHE TYR ASN THR LYS PRO TYR SEQRES 3 A 45 LYS HIS ARG ASP ASP ARG LEU LEU GLN ALA LEU MET ASP SEQRES 4 A 45 ILE LEU ASN GLU GLU ASN HELIX 1 1 TYR A 721 VAL A 727 1 7 HELIX 2 2 ARG A 740 LEU A 749 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1