HEADER TRANSPORT PROTEIN 02-FEB-09 2KEP TITLE SOLUTION STRUCTURE OF XCPT, THE MAIN COMPONENT OF THE TYPE 2 SECRETION TITLE 2 SYSTEM OF PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL SECRETION PATHWAY PROTEIN G; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 33-142; COMPND 5 SYNONYM: PILD-DEPENDENT PROTEIN PDDA, XCPT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: PA3101, PDDA, XCPT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-PLYSS(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS METHYLATION, TRANSPORT, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.ALPHONSE,E.DURAND,B.DOUZI,H.DARBON,A.FILLOUX,R.VOULHOUX,C.BERNARD REVDAT 3 29-MAY-24 2KEP 1 REMARK REVDAT 2 16-MAR-22 2KEP 1 REMARK REVDAT 1 06-OCT-09 2KEP 0 JRNL AUTH S.ALPHONSE,E.DURAND,B.DOUZI,B.WAEGELE,H.DARBON,A.FILLOUX, JRNL AUTH 2 R.VOULHOUX,C.BERNARD JRNL TITL STRUCTURE OF THE PSEUDOMONAS AERUGINOSA XCPT PSEUDOPILIN, A JRNL TITL 2 MAJOR COMPONENT OF THE TYPE II SECRETION SYSTEM JRNL REF J.STRUCT.BIOL. 2009 JRNL REFN ESSN 1095-8657 JRNL PMID 19747550 JRNL DOI 10.1016/J.JSB.2009.09.003 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.0, X-PLOR NIH REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA, CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KEP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000101028. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 290; 300 REMARK 210 PH : 7; 7 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIANT REMARK 210 SAMPLE CONTENTS : 1.3MM XCPT, 50MM SODIUM REMARK 210 PHOSPHATE, 150MM SODIUM CHLORIDE, REMARK 210 90% H2O/10% D2O; 0.9MM [U-15N] REMARK 210 XCPT, 50MM SODIUM PHOSPHATE, REMARK 210 150MM SODIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O; 0.9MM [U-15N] XCPT, 100% REMARK 210 D2O; 0.9MM [U-13C; U-15N] XCPT, REMARK 210 50MM SODIUM PHOSPHATE, 150MM REMARK 210 SODIUM CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D HNCA; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 HN(CO)CA; 3D HCCH-TOCSY; 3D HNHA; REMARK 210 3D 1H-15N NOESY; 3D 1H-15N REMARK 210 TOCSY; 3D HNHB; 3D HCACO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW 5.2.2.01, TALOS REMARK 210 3.851, CYANA 2.1, PROCHECKNMR REMARK 210 3.4, WHAT IF 20080408-2247, REMARK 210 QUEEN 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 12 PRO A 122 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 18 PRO A 122 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 43 -35.94 72.99 REMARK 500 1 GLN A 75 -64.69 -102.09 REMARK 500 1 PRO A 91 97.63 -64.60 REMARK 500 1 TYR A 99 91.82 66.43 REMARK 500 1 PRO A 104 -168.52 -74.70 REMARK 500 1 PRO A 107 171.47 -59.80 REMARK 500 1 LYS A 120 -33.07 77.26 REMARK 500 1 PRO A 122 -20.85 -39.78 REMARK 500 1 SER A 137 -176.76 179.18 REMARK 500 1 ASP A 138 -71.86 -81.19 REMARK 500 2 ASP A 43 -32.47 75.62 REMARK 500 2 ALA A 70 157.35 178.50 REMARK 500 2 GLN A 75 -66.01 -102.58 REMARK 500 2 PRO A 91 101.51 -51.10 REMARK 500 2 ASN A 93 84.16 16.01 REMARK 500 2 TYR A 99 90.15 63.04 REMARK 500 2 LYS A 102 28.82 -76.47 REMARK 500 2 PRO A 104 -167.74 -71.15 REMARK 500 2 PRO A 107 171.91 -44.85 REMARK 500 2 LYS A 120 24.28 45.33 REMARK 500 2 SER A 137 -178.70 178.07 REMARK 500 3 ASP A 43 -26.40 76.88 REMARK 500 3 ALA A 70 161.23 178.03 REMARK 500 3 GLN A 75 -65.42 -102.02 REMARK 500 3 PRO A 91 98.48 -50.82 REMARK 500 3 TYR A 99 78.56 65.67 REMARK 500 3 PRO A 104 -168.20 -78.42 REMARK 500 3 PRO A 107 172.17 -50.00 REMARK 500 3 PRO A 122 -20.79 -39.20 REMARK 500 3 ALA A 130 5.19 -63.96 REMARK 500 3 SER A 137 -177.98 178.81 REMARK 500 4 ASP A 43 -49.00 77.15 REMARK 500 4 ALA A 70 161.30 178.70 REMARK 500 4 GLN A 75 -67.65 -102.80 REMARK 500 4 PRO A 91 99.21 -62.39 REMARK 500 4 ASN A 93 91.36 -65.48 REMARK 500 4 LYS A 96 -169.36 -75.58 REMARK 500 4 TYR A 99 92.37 61.88 REMARK 500 4 LYS A 101 -171.93 -68.97 REMARK 500 4 LYS A 102 28.81 -72.67 REMARK 500 4 PRO A 104 -167.96 -66.98 REMARK 500 4 PRO A 107 170.43 -49.05 REMARK 500 4 PRO A 117 108.51 -47.78 REMARK 500 4 PRO A 122 -27.08 -38.61 REMARK 500 4 PHE A 123 146.71 -173.20 REMARK 500 4 SER A 137 -178.39 179.59 REMARK 500 5 ASP A 43 -33.72 75.95 REMARK 500 5 ALA A 70 162.33 177.41 REMARK 500 5 GLN A 75 -65.24 -102.48 REMARK 500 5 PRO A 91 98.76 -58.45 REMARK 500 REMARK 500 THIS ENTRY HAS 214 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 6 ARG A 41 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2KEP A 39 148 UNP Q00514 GSPG_PSEAE 33 142 SEQRES 1 A 110 MET SER ARG PRO ASP GLN ALA LYS VAL THR VAL ALA LYS SEQRES 2 A 110 GLY ASP ILE LYS ALA ILE ALA ALA ALA LEU ASP MET TYR SEQRES 3 A 110 LYS LEU ASP ASN PHE ALA TYR PRO SER THR GLN GLN GLY SEQRES 4 A 110 LEU GLU ALA LEU VAL LYS LYS PRO THR GLY ASN PRO GLN SEQRES 5 A 110 PRO LYS ASN TRP ASN LYS ASP GLY TYR LEU LYS LYS LEU SEQRES 6 A 110 PRO VAL ASP PRO TRP GLY ASN PRO TYR GLN TYR LEU ALA SEQRES 7 A 110 PRO GLY THR LYS GLY PRO PHE ASP LEU TYR SER LEU GLY SEQRES 8 A 110 ALA ASP GLY LYS GLU GLY GLY SER ASP ASN ASP ALA ASP SEQRES 9 A 110 ILE GLY ASN TRP ASP ASN HELIX 1 1 ASP A 43 ASN A 68 1 26 HELIX 2 2 GLN A 75 LYS A 83 1 9 SHEET 1 A 3 GLN A 113 LEU A 115 0 SHEET 2 A 3 ASP A 124 SER A 127 -1 O TYR A 126 N GLN A 113 SHEET 3 A 3 ILE A 143 ASN A 145 -1 O ILE A 143 N SER A 127 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1