HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 05-FEB-09 2KEW TITLE THE SOLUTION STRUCTURE OF BACILLUS SUBTILIS SR211 START DOMAIN BY NMR TITLE 2 SPECTROSCOPY COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YNDB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YNDB, BSU17730; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MVK KEYWDS BACILLUS SUBTILIS, PROTEIN YNDB, START DOMAIN, NMR RESONANCE KEYWDS 2 ASSIGNMENTS, LIPID BINDING, STRUCTURAL GENOMICS, UNKNOWN FUNCTION, KEYWDS 3 PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 4 CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR K.A.MERCIER,G.A.MUELLER,R.POWERS,T.B.ACTON,M.CIANO,C.HO,J.LUI,L.MA, AUTHOR 2 B.ROST,R.ROSSI,R.XIAO,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (NESG) REVDAT 3 13-JUL-11 2KEW 1 VERSN REVDAT 2 17-NOV-09 2KEW 1 JRNL REVDAT 1 17-MAR-09 2KEW 0 JRNL AUTH K.A.MERCIER,G.A.MUELLER,T.B.ACTON,R.XIAO,G.T.MONTELIONE, JRNL AUTH 2 R.POWERS JRNL TITL (1)H, (13)C, AND (15)N NMR ASSIGNMENTS FOR THE BACILLUS JRNL TITL 2 SUBTILIS YNDB START DOMAIN. JRNL REF BIOMOL.NMR ASSIGN. V. 3 191 2009 JRNL REFN ISSN 1874-2718 JRNL PMID 19888688 JRNL DOI 10.1007/S12104-009-9172-6 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KEW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-09. REMARK 100 THE RCSB ID CODE IS RCSB101035. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 277 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.105 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 SR211, 20 MM MES, 5 % D2O, 0.02 % REMARK 210 SODIUM AZIDE, 10 MM DTT, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D HNHA; 3D HCCH-COSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA, NMRVIEW, NMRDRAW, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 70 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE START DOMAIN IS FOUND IN BOTH EUKARYOTES AND REMARK 210 PROKARYOTES, WITH PUTATIVE FUNCTIONS INCLUDING SIGNAL REMARK 210 TRANSDUCTION, TRANSCRIPTIONAL REGULATION, GTPASE ACTIVATION AND REMARK 210 THIOESTER HYDROLYSIS. HERE WE REPORT THE NEAR COMPLETE 1H, 15N REMARK 210 AND 13C BACKBONE AND SIDE CHAIN NMR RESONANCE ASSIGNMENTS FOR THE REMARK 210 BACILLUS SUBTILIS START DOMAIN PROTEIN YNDB. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 GLU A 81 HB ILE A 112 1.05 REMARK 500 HG2 GLU A 33 HA ASP A 43 1.22 REMARK 500 HB3 LEU A 92 HB3 GLU A 94 1.23 REMARK 500 HD12 ILE A 22 HB2 ASP A 91 1.25 REMARK 500 HE22 GLN A 50 HB VAL A 65 1.27 REMARK 500 HA ARG A 137 HB2 LYS A 140 1.29 REMARK 500 HA MET A 126 HB2 TRP A 130 1.32 REMARK 500 HD23 LEU A 100 HE1 TRP A 130 1.35 REMARK 500 HB3 GLU A 6 HA PRO A 108 1.35 REMARK 500 HD23 LEU A 89 HD1 PHE A 98 1.37 REMARK 500 HG21 VAL A 111 H GLY A 113 1.40 REMARK 500 HG3 GLU A 94 H LYS A 95 1.41 REMARK 500 HA VAL A 29 HG13 ILE A 35 1.42 REMARK 500 HB3 ASP A 79 H THR A 80 1.42 REMARK 500 HG2 GLU A 81 HB2 ALA A 115 1.44 REMARK 500 HG2 GLU A 107 HA ILE A 112 1.45 REMARK 500 HE2 PHE A 98 HB2 LEU A 100 1.45 REMARK 500 HB2 SER A 56 HD3 PRO A 57 1.47 REMARK 500 HB3 ALA A 8 HB2 GLU A 107 1.48 REMARK 500 HG3 GLU A 48 HG12 VAL A 68 1.54 REMARK 500 HB2 TRP A 83 HG13 VAL A 85 1.55 REMARK 500 HD1 PHE A 87 HG LEU A 100 1.55 REMARK 500 HB3 LEU A 9 HG11 VAL A 122 1.56 REMARK 500 HG21 ILE A 16 HA ASN A 135 1.56 REMARK 500 HB2 TRP A 38 HG22 ILE A 133 1.57 REMARK 500 HB VAL A 111 H ILE A 112 1.57 REMARK 500 HE2 PHE A 98 HD13 LEU A 100 1.58 REMARK 500 HD12 LEU A 100 HG21 VAL A 134 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 7 -69.83 -152.55 REMARK 500 1 ALA A 8 -168.59 60.22 REMARK 500 1 VAL A 29 -63.06 -131.75 REMARK 500 1 GLU A 33 -8.18 -47.42 REMARK 500 1 PHE A 39 -72.08 -64.89 REMARK 500 1 MET A 40 139.70 178.35 REMARK 500 1 PRO A 41 101.67 -40.63 REMARK 500 1 ASP A 43 51.84 -114.64 REMARK 500 1 LEU A 54 15.48 -68.77 REMARK 500 1 PRO A 62 -90.37 -88.63 REMARK 500 1 PRO A 71 68.39 -4.63 REMARK 500 1 THR A 72 -50.06 -139.29 REMARK 500 1 ASP A 79 -106.15 41.62 REMARK 500 1 GLU A 94 -154.97 -52.65 REMARK 500 1 LYS A 106 34.55 90.66 REMARK 500 1 PRO A 108 -153.69 -92.67 REMARK 500 1 ASN A 116 -70.43 -179.47 REMARK 500 1 GLU A 117 -71.84 -172.63 REMARK 500 1 GLU A 143 -56.40 -148.17 REMARK 500 1 GLU A 144 -152.20 42.61 REMARK 500 1 LEU A 145 -51.15 -153.70 REMARK 500 1 HIS A 150 -73.44 -135.03 REMARK 500 2 ALA A 2 -67.51 -162.87 REMARK 500 2 GLU A 6 -109.09 -85.05 REMARK 500 2 ALA A 8 155.85 72.19 REMARK 500 2 VAL A 29 -64.30 -130.13 REMARK 500 2 GLU A 33 -5.31 -47.88 REMARK 500 2 PHE A 39 95.63 81.56 REMARK 500 2 MET A 40 161.95 67.27 REMARK 500 2 ASP A 43 39.52 -155.65 REMARK 500 2 GLN A 55 -162.40 -101.16 REMARK 500 2 SER A 56 136.12 70.92 REMARK 500 2 PRO A 57 -142.38 -83.66 REMARK 500 2 PHE A 58 -47.13 77.15 REMARK 500 2 SER A 61 66.05 61.58 REMARK 500 2 PRO A 62 -80.17 -74.69 REMARK 500 2 PRO A 71 60.10 -2.21 REMARK 500 2 THR A 72 -44.48 -136.86 REMARK 500 2 ASP A 79 -146.05 55.73 REMARK 500 2 GLU A 94 -158.86 -54.85 REMARK 500 2 LYS A 106 -104.73 -174.22 REMARK 500 2 ASN A 109 96.53 59.22 REMARK 500 2 ASN A 116 -65.57 -172.40 REMARK 500 2 GLU A 117 -81.19 -167.31 REMARK 500 2 GLU A 143 -56.06 -153.24 REMARK 500 2 GLU A 144 77.35 35.18 REMARK 500 2 GLU A 146 162.78 68.19 REMARK 500 2 HIS A 147 -24.78 174.68 REMARK 500 2 HIS A 151 -149.93 56.62 REMARK 500 3 ASN A 7 -60.43 -140.02 REMARK 500 REMARK 500 THIS ENTRY HAS 228 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 110 VAL A 111 2 141.39 REMARK 500 HIS A 102 SER A 103 3 146.45 REMARK 500 GLY A 113 LYS A 114 4 146.98 REMARK 500 LYS A 114 ALA A 115 4 -142.09 REMARK 500 SER A 103 GLY A 104 10 -149.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16043 RELATED DB: BMRB REMARK 900 RELATED ID: SR211 RELATED DB: TARGETDB DBREF 2KEW A 1 144 UNP O31806 YNDB_BACSU 1 144 SEQADV 2KEW GLN A 110 UNP O31806 GLU 110 CONFLICT SEQADV 2KEW LEU A 145 UNP O31806 EXPRESSION TAG SEQADV 2KEW GLU A 146 UNP O31806 EXPRESSION TAG SEQADV 2KEW HIS A 147 UNP O31806 EXPRESSION TAG SEQADV 2KEW HIS A 148 UNP O31806 EXPRESSION TAG SEQADV 2KEW HIS A 149 UNP O31806 EXPRESSION TAG SEQADV 2KEW HIS A 150 UNP O31806 EXPRESSION TAG SEQADV 2KEW HIS A 151 UNP O31806 EXPRESSION TAG SEQADV 2KEW HIS A 152 UNP O31806 EXPRESSION TAG SEQRES 1 A 152 MET ALA GLN ASN ASN GLU ASN ALA LEU PRO ASP ILE THR SEQRES 2 A 152 LYS SER ILE THR LEU GLU ALA PRO ILE GLN LYS VAL TRP SEQRES 3 A 152 GLU THR VAL SER THR SER GLU GLY ILE ALA LYS TRP PHE SEQRES 4 A 152 MET PRO ASN ASP PHE GLN LEU LYS GLU GLY GLN GLU PHE SEQRES 5 A 152 HIS LEU GLN SER PRO PHE GLY PRO SER PRO CYS LYS VAL SEQRES 6 A 152 LEU ALA VAL GLN ALA PRO THR GLU LEU SER PHE GLU TRP SEQRES 7 A 152 ASP THR GLU GLY TRP VAL VAL THR PHE GLN LEU GLU ASP SEQRES 8 A 152 LEU GLY GLU LYS THR GLY PHE THR LEU ILE HIS SER GLY SEQRES 9 A 152 TRP LYS GLU PRO ASN GLN VAL ILE GLY LYS ALA ASN GLU SEQRES 10 A 152 LYS SER SER VAL VAL ARG GLY LYS MET ASP GLY GLY TRP SEQRES 11 A 152 THR GLY ILE VAL ASN GLU ARG LEU ARG LYS ALA VAL GLU SEQRES 12 A 152 GLU LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 PRO A 21 VAL A 29 1 9 HELIX 2 2 SER A 32 MET A 40 1 9 HELIX 3 3 LYS A 118 VAL A 134 1 17 HELIX 4 4 GLU A 136 GLU A 143 1 8 SHEET 1 A 5 ILE A 12 LEU A 18 0 SHEET 2 A 5 THR A 96 HIS A 102 -1 O LEU A 100 N LYS A 14 SHEET 3 A 5 VAL A 84 GLU A 90 -1 N THR A 86 O ILE A 101 SHEET 4 A 5 GLU A 73 GLU A 77 -1 N LEU A 74 O PHE A 87 SHEET 5 A 5 LYS A 64 GLN A 69 -1 N GLN A 69 O GLU A 73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1