HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 06-FEB-09 2KEY TITLE SOLUTION NMR STRUCTURE OF A DOMAIN FROM A PUTATIVE PHAGE INTEGRASE TITLE 2 PROTEIN BF2284 FROM BACTEROIDES FRAGILIS, NORTHEAST STRUCTURAL TITLE 3 GENOMICS CONSORTIUM TARGET BFR257C COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHAGE INTEGRASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 96-198; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 STRAIN: NCTC 9343; SOURCE 5 ATCC: 25285; SOURCE 6 GENE: BF2284; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21-23C KEYWDS PROTEIN STRUCTURE, PSI, NESG, STRUCTURAL GENOMICS, UNKNOWN FUNCTION, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.L.MILLS,B.SATHYAMOORTHY,D.K.SUKUMARAN,D.LEE,C.CICCOSANTI,M.JIANG, AUTHOR 2 R.XIAO,T.B.ACTON,G.V.T.SWAPNA,B.ROST,R.NAIR,J.K.EVERETT, AUTHOR 3 G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (NESG) REVDAT 3 01-MAY-24 2KEY 1 REMARK SEQADV REVDAT 2 13-JUL-11 2KEY 1 VERSN REVDAT 1 14-APR-09 2KEY 0 JRNL AUTH J.L.MILLS,B.SATHYAMOORTHY,D.K.SUKUMARAN,D.LEE,C.CICCOSANTI, JRNL AUTH 2 M.JIANG,R.XIAO,T.B.ACTON,G.V.T.SWAPNA,B.ROST,R.NAIR, JRNL AUTH 3 J.K.EVERETT,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF A DOMAIN FROM A PUTATIVE PHAGE JRNL TITL 2 INTEGRASE PROTEIN, BF2284, FROM BACTEROIDES FRAGILIS, JRNL TITL 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET BFR257C JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ, CNS, PSVS REMARK 3 AUTHORS : VARIAN (VNMRJ), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS), BHATTACHARYA AND MONTELIONE REMARK 3 (PSVS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KEY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000101037. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 430 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.05 MM [U-99% 13C; U-99% 15N] REMARK 210 BFR257C-1, 10 % [U-2H] D2O-2, 90 REMARK 210 % H2O-3, 50 UM DSS-4, 10 MM DTT- REMARK 210 5, 200 MM SODIUM CHLORIDE-6, REMARK 210 0.02 % SODIUM AZIDE-7, 5 MM REMARK 210 CALCIUM CHLORIDE-8, 20 MM MES-9, REMARK 210 90% H2O/10% D2O; 0.77 MM [U-5% REMARK 210 13C; U-99% 15N] BFR257C-10, 10 % REMARK 210 [U-2H] D2O-11, 90 % H2O-12, 50 REMARK 210 UM DSS-13, 10 MM DTT-14, 200 MM REMARK 210 SODIUM CHLORIDE-15, 0.02 % REMARK 210 SODIUM AZIDE-16, 5 MM CALCIUM REMARK 210 CHLORIDE-17, 20 MM MES-18, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNNCO; (4,3)D GFT HNNCABCA; REMARK 210 (4,3)D GFT CABCA(CO)NHN; (4,3)D REMARK 210 GFT HABCAB(CO)NHN; (4,3)D GFT REMARK 210 HCCH; 3D SIMULTANEOUS NCALICARO REMARK 210 HH NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRDRAW, XEASY, SPSCAN, REMARK 210 AUTOASSIGN, CSI, TALOS, CYANA, REMARK 210 MOLMOL REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 26 H THR A 29 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 4 85.90 -65.02 REMARK 500 1 SER A 5 75.14 59.05 REMARK 500 1 CYS A 44 -164.42 61.52 REMARK 500 1 GLU A 45 158.91 72.10 REMARK 500 1 LEU A 47 108.61 72.27 REMARK 500 1 CYS A 69 85.48 63.91 REMARK 500 1 TYR A 94 -3.34 -145.12 REMARK 500 1 HIS A 108 -61.21 69.64 REMARK 500 1 HIS A 111 -102.86 55.19 REMARK 500 2 LYS A 41 72.36 67.42 REMARK 500 2 GLU A 45 46.61 -91.15 REMARK 500 2 LEU A 47 119.55 66.54 REMARK 500 2 LYS A 92 57.43 -160.97 REMARK 500 2 TYR A 94 -26.06 -141.63 REMARK 500 2 GLU A 96 -43.11 -152.00 REMARK 500 2 LEU A 105 -4.61 70.80 REMARK 500 2 GLU A 106 136.33 69.09 REMARK 500 3 ASN A 2 -55.93 -120.56 REMARK 500 3 SER A 5 60.71 67.30 REMARK 500 3 HIS A 33 30.88 -143.77 REMARK 500 3 LYS A 34 -73.09 -95.71 REMARK 500 3 LYS A 41 102.45 179.58 REMARK 500 3 TYR A 43 -161.83 59.58 REMARK 500 3 CYS A 44 -73.98 77.17 REMARK 500 3 GLU A 45 -75.32 64.55 REMARK 500 3 LEU A 68 -89.08 -93.38 REMARK 500 3 CYS A 69 -42.21 179.07 REMARK 500 3 LEU A 105 -82.20 62.15 REMARK 500 3 GLU A 106 92.34 -170.74 REMARK 500 3 HIS A 107 31.09 -84.58 REMARK 500 3 HIS A 109 -84.99 66.25 REMARK 500 3 HIS A 110 -80.35 -153.03 REMARK 500 3 HIS A 111 -47.81 -163.17 REMARK 500 4 ASN A 3 83.82 70.27 REMARK 500 4 HIS A 33 34.14 -142.00 REMARK 500 4 LYS A 41 103.71 69.52 REMARK 500 4 GLU A 42 -80.25 -60.44 REMARK 500 4 GLU A 51 -49.30 -152.01 REMARK 500 4 LYS A 92 75.30 -170.19 REMARK 500 4 TYR A 94 -51.32 -161.49 REMARK 500 4 HIS A 109 -115.80 52.62 REMARK 500 4 HIS A 110 -33.19 -179.85 REMARK 500 5 ASN A 2 19.29 -157.86 REMARK 500 5 SER A 5 82.74 69.13 REMARK 500 5 CYS A 44 91.64 68.73 REMARK 500 5 CYS A 69 -164.77 67.43 REMARK 500 5 ASN A 70 -173.20 73.27 REMARK 500 5 TYR A 94 -70.95 -140.78 REMARK 500 5 LEU A 105 94.06 61.13 REMARK 500 5 HIS A 107 114.26 -169.55 REMARK 500 REMARK 500 THIS ENTRY HAS 166 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BFR257C RELATED DB: TARGETDB DBREF 2KEY A 2 104 UNP Q5LD33 Q5LD33_BACFN 96 198 SEQADV 2KEY MET A 1 UNP Q5LD33 EXPRESSION TAG SEQADV 2KEY LEU A 105 UNP Q5LD33 EXPRESSION TAG SEQADV 2KEY GLU A 106 UNP Q5LD33 EXPRESSION TAG SEQADV 2KEY HIS A 107 UNP Q5LD33 EXPRESSION TAG SEQADV 2KEY HIS A 108 UNP Q5LD33 EXPRESSION TAG SEQADV 2KEY HIS A 109 UNP Q5LD33 EXPRESSION TAG SEQADV 2KEY HIS A 110 UNP Q5LD33 EXPRESSION TAG SEQADV 2KEY HIS A 111 UNP Q5LD33 EXPRESSION TAG SEQADV 2KEY HIS A 112 UNP Q5LD33 EXPRESSION TAG SEQRES 1 A 112 MET ASN ASN PRO SER ASP PHE LYS SER PHE HIS ASP PHE SEQRES 2 A 112 VAL ALA SER TYR MET LYS THR TYR SER ARG ARG LEU GLU SEQRES 3 A 112 ILE GLY THR PHE ARG HIS HIS LYS SER CYS MET ARG LYS SEQRES 4 A 112 PHE LYS GLU TYR CYS GLU GLY LEU GLN PHE HIS GLU LEU SEQRES 5 A 112 THR GLU ASP PHE LEU ARG ASP TYR LEU ILE TYR MET LYS SEQRES 6 A 112 LYS THR LEU CYS ASN ALA ASP SER THR ALA GLN ARG ASN SEQRES 7 A 112 LEU SER THR ILE LYS ILE TYR VAL SER ALA ALA ILE LYS SEQRES 8 A 112 LYS GLY TYR MET GLU ASN ASP PRO PHE LYS ASP PHE GLY SEQRES 9 A 112 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 SER A 9 MET A 18 1 10 HELIX 2 2 MET A 18 ARG A 23 1 6 HELIX 3 3 GLU A 26 PHE A 40 1 15 HELIX 4 4 THR A 53 THR A 67 1 15 HELIX 5 5 ALA A 71 LYS A 92 1 22 HELIX 6 6 ASP A 98 GLY A 104 1 7 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1