HEADER DNA BINDING PROTEIN 27-FEB-09 2KFS TITLE NMR STRUCTURE OF RV2175C COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL REGULATORY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV2175C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET15B-TEV KEYWDS WHTH, DNA BINDING, PHOSPHORYLATION, DNA-BINDING PROTEIN, DNA BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR P.BARTHE,M.COHEN-GONSAUD,C.ROUMESTAND,V.MOLLE REVDAT 4 14-JUN-23 2KFS 1 REMARK REVDAT 3 26-FEB-20 2KFS 1 KEYWDS REMARK SEQADV REVDAT 2 28-JUL-09 2KFS 1 JRNL REVDAT 1 19-MAY-09 2KFS 0 JRNL AUTH M.COHEN-GONSAUD,P.BARTHE,M.J.CANOVA,C.STAGIER-SIMON, JRNL AUTH 2 L.KREMER,C.ROUMESTAND,V.MOLLE JRNL TITL THE MYCOBACTERIUM TUBERCULOSIS SER/THR KINASE SUBSTRATE JRNL TITL 2 RV2175C IS A DNA-BINDING PROTEIN REGULATED BY JRNL TITL 3 PHOSPHORYLATION. JRNL REF J.BIOL.CHEM. V. 284 19290 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19457863 JRNL DOI 10.1074/JBC.M109.019653 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : GIFA 4.44, CNS 1.2 REMARK 3 AUTHORS : DELSUC (GIFA), BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KFS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000101066. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 4.6 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 300 MM [U-15N] RV2175C, 10 MM REMARK 210 SODIUM ACETATE, 150 MM SODIUM REMARK 210 CHLORIDE, 95% H2O/5% D2O; 300 MM REMARK 210 [U-13C; U-15N] RV2175C, 10 MM REMARK 210 SODIUM ACETATE, 150 MM SODIUM REMARK 210 CHLORIDE, 95% H2O/5% D2O; 300 MM REMARK 210 RV2175C, 10 MM SODIUM ACETATE, REMARK 210 150 MM SODIUM CHLORIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-15N REMARK 210 TOCSY; 2D 1H-1H NOESY; 3D HNCA; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D HCACO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CINDY 1.7A, CYANA 2.1, PROCHECK REMARK 210 3.5.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 6 41.92 -76.84 REMARK 500 1 ALA A 61 -16.81 67.03 REMARK 500 1 ASN A 122 68.63 67.10 REMARK 500 3 VAL A 13 25.33 -144.66 REMARK 500 3 ASN A 122 69.06 75.46 REMARK 500 4 ALA A 5 89.31 -152.57 REMARK 500 4 PRO A 6 97.81 -65.42 REMARK 500 4 SER A 15 159.31 178.33 REMARK 500 4 ASN A 122 64.72 66.71 REMARK 500 5 ARG A 12 77.53 -106.62 REMARK 500 5 ALA A 61 -59.16 70.63 REMARK 500 6 ASP A 114 101.00 -57.01 REMARK 500 6 ASN A 122 69.33 69.36 REMARK 500 7 ASN A 122 69.33 72.40 REMARK 500 8 ALA A 5 102.94 -172.24 REMARK 500 8 VAL A 13 79.49 -119.57 REMARK 500 8 PRO A 28 106.91 -31.08 REMARK 500 9 THR A 9 -161.13 -162.84 REMARK 500 9 ASP A 114 99.37 -63.66 REMARK 500 10 SER A 8 99.91 -69.98 REMARK 500 10 ALA A 61 -48.06 72.96 REMARK 500 11 ARG A 12 97.73 -58.38 REMARK 500 11 PRO A 28 106.51 -42.85 REMARK 500 11 ALA A 61 9.55 57.11 REMARK 500 11 ASP A 114 70.87 47.02 REMARK 500 11 ASN A 122 68.32 61.81 REMARK 500 12 PRO A 28 107.94 -39.68 REMARK 500 13 ALA A 5 118.05 -36.99 REMARK 500 13 ASP A 114 88.87 49.88 REMARK 500 13 ASP A 118 -175.60 171.77 REMARK 500 13 ASN A 122 70.30 68.22 REMARK 500 14 PRO A 6 33.03 -87.00 REMARK 500 14 ALA A 61 -51.68 63.58 REMARK 500 14 ASN A 122 72.26 74.36 REMARK 500 15 SER A 8 134.92 177.68 REMARK 500 15 ASP A 118 -169.92 -102.66 REMARK 500 16 PRO A 6 -169.25 -77.93 REMARK 500 18 PRO A 28 98.39 -55.27 REMARK 500 18 ALA A 61 -15.78 70.04 REMARK 500 18 ARG A 117 16.94 -68.51 REMARK 500 19 PRO A 6 -178.63 -67.83 REMARK 500 19 ARG A 12 75.68 -104.29 REMARK 500 19 VAL A 22 45.14 -96.83 REMARK 500 20 PRO A 28 110.64 -36.46 REMARK 500 20 ASN A 122 66.44 68.12 REMARK 500 22 ARG A 100 -71.26 -52.56 REMARK 500 22 SER A 116 87.31 -67.19 REMARK 500 22 ASN A 122 40.42 70.10 REMARK 500 23 PRO A 6 -162.47 -79.39 REMARK 500 23 ALA A 61 -53.19 70.96 REMARK 500 REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 124 0.08 SIDE CHAIN REMARK 500 5 ARG A 60 0.08 SIDE CHAIN REMARK 500 6 ARG A 124 0.08 SIDE CHAIN REMARK 500 8 ARG A 135 0.07 SIDE CHAIN REMARK 500 10 ARG A 124 0.08 SIDE CHAIN REMARK 500 12 ARG A 124 0.08 SIDE CHAIN REMARK 500 13 ARG A 60 0.08 SIDE CHAIN REMARK 500 15 ARG A 124 0.08 SIDE CHAIN REMARK 500 17 ARG A 100 0.07 SIDE CHAIN REMARK 500 19 ARG A 60 0.09 SIDE CHAIN REMARK 500 19 ARG A 94 0.11 SIDE CHAIN REMARK 500 22 ARG A 100 0.10 SIDE CHAIN REMARK 500 22 ARG A 113 0.08 SIDE CHAIN REMARK 500 23 ARG A 34 0.07 SIDE CHAIN REMARK 500 28 ARG A 51 0.08 SIDE CHAIN REMARK 500 28 ARG A 100 0.08 SIDE CHAIN REMARK 500 30 ARG A 34 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16188 RELATED DB: BMRB DBREF 2KFS A 1 146 UNP O53509 O53509_MYCTU 1 146 SEQADV 2KFS GLY A -1 UNP O53509 EXPRESSION TAG SEQADV 2KFS HIS A 0 UNP O53509 EXPRESSION TAG SEQRES 1 A 148 GLY HIS MET PRO GLY ARG ALA PRO GLY SER THR LEU ALA SEQRES 2 A 148 ARG VAL GLY SER ILE PRO ALA GLY ASP ASP VAL LEU ASP SEQRES 3 A 148 PRO ASP GLU PRO THR TYR ASP LEU PRO ARG VAL ALA GLU SEQRES 4 A 148 LEU LEU GLY VAL PRO VAL SER LYS VAL ALA GLN GLN LEU SEQRES 5 A 148 ARG GLU GLY HIS LEU VAL ALA VAL ARG ARG ALA GLY GLY SEQRES 6 A 148 VAL VAL ILE PRO GLN VAL PHE PHE THR ASN SER GLY GLN SEQRES 7 A 148 VAL VAL LYS SER LEU PRO GLY LEU LEU THR ILE LEU HIS SEQRES 8 A 148 ASP GLY GLY TYR ARG ASP THR GLU ILE MET ARG TRP LEU SEQRES 9 A 148 PHE THR PRO ASP PRO SER LEU THR ILE THR ARG ASP GLY SEQRES 10 A 148 SER ARG ASP ALA VAL SER ASN ALA ARG PRO VAL ASP ALA SEQRES 11 A 148 LEU HIS ALA HIS GLN ALA ARG GLU VAL VAL ARG ARG ALA SEQRES 12 A 148 GLN ALA MET ALA TYR HELIX 1 1 LEU A 32 GLY A 40 1 9 HELIX 2 2 PRO A 42 GLU A 52 1 11 HELIX 3 3 VAL A 69 PHE A 71 5 3 HELIX 4 4 SER A 80 GLY A 91 1 12 HELIX 5 5 ARG A 94 PHE A 103 1 10 HELIX 6 6 ARG A 124 ALA A 131 1 8 HELIX 7 7 GLN A 133 TYR A 146 1 14 SHEET 1 A 3 THR A 29 ASP A 31 0 SHEET 2 A 3 GLY A 63 PRO A 67 -1 O ILE A 66 N TYR A 30 SHEET 3 A 3 VAL A 58 ARG A 60 -1 N VAL A 58 O VAL A 65 SHEET 1 B 2 ASP A 106 THR A 112 0 SHEET 2 B 2 ALA A 119 ALA A 123 -1 O VAL A 120 N ILE A 111 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1