HEADER MEMBRANE PROTEIN 18-MAR-09 2KGS TITLE SOLUTION STRUCTURE OF THE AMINO-TERMINAL DOMAIN OF OMPATB, A PORE TITLE 2 FORMING PROTEIN FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN RV0899/MT0922; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 13.6KDA AMINO-TERMINAL FRAGMENT, RESIDUES 73-204; COMPND 5 SYNONYM: OMPATB, OUTER MEMBRANE PROTEIN A OMPA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: RV0899, MT0922, MTCY31.27; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)OMP8; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PETSIG-OMPATB73-326 KEYWDS OUTER MEMBRANE PROTEIN A, MYCOBACTERIUM TUBERCULOSIS, BON DOMAIN, KEYWDS 2 CELL MEMBRANE, MEMBRANE, TRANSMEMBRANE, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR Y.YANG,D.AUGUIN,S.DELBECQ,E.DUMAS,V.MOLLE,N.SAINT REVDAT 4 26-FEB-20 2KGS 1 REMARK REVDAT 3 12-JAN-11 2KGS 1 JRNL REVDAT 2 08-DEC-10 2KGS 1 JRNL REMARK REVDAT 1 09-MAR-10 2KGS 0 JRNL AUTH Y.YANG,D.AUGUIN,S.DELBECQ,E.DUMAS,G.MOLLE,V.MOLLE, JRNL AUTH 2 C.ROUMESTAND,N.SAINT JRNL TITL STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS OMPATB PROTEIN: JRNL TITL 2 A MODEL OF AN OLIGOMERIC CHANNEL IN THE MYCOBACTERIAL CELL JRNL TITL 3 WALL JRNL REF PROTEINS V. 79 645 2011 JRNL REFN ISSN 0887-3585 JRNL PMID 21117233 JRNL DOI 10.1002/PROT.22912 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 8 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, AND KOLLM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CYANA, AMBER REMARK 4 REMARK 4 2KGS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000101101. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 300 REMARK 210 PH : 6; NULL REMARK 210 IONIC STRENGTH : 100; 100 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM PHOSPHATE-1, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-15N HSQC; REMARK 210 3D 1H-15N NOESY; 3D HNCO; 3D REMARK 210 HNCA; 3D CBCA(CO)NH; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, GIFA, XWINNMR REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING, MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 168 OE1 GLU A 170 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 10 GLU A 193 CG GLU A 193 CD 0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 177 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 4 ARG A 157 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG A 177 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 10 ASP A 185 OD1 - CG - OD2 ANGL. DEV. = 45.3 DEGREES REMARK 500 10 ASP A 185 CB - CG - OD1 ANGL. DEV. = -35.0 DEGREES REMARK 500 10 ASP A 185 CB - CG - OD2 ANGL. DEV. = -33.0 DEGREES REMARK 500 10 GLU A 193 OE1 - CD - OE2 ANGL. DEV. = 44.4 DEGREES REMARK 500 10 GLU A 193 CG - CD - OE1 ANGL. DEV. = -34.7 DEGREES REMARK 500 10 GLU A 193 CG - CD - OE2 ANGL. DEV. = -34.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 80 163.94 -44.43 REMARK 500 1 GLN A 123 17.69 -140.20 REMARK 500 1 LEU A 133 -175.79 -65.29 REMARK 500 1 ARG A 157 -71.61 51.36 REMARK 500 1 ASP A 158 21.00 -144.95 REMARK 500 1 ALA A 198 57.77 -155.74 REMARK 500 2 ALA A 76 39.66 -150.42 REMARK 500 2 SER A 80 164.31 -41.23 REMARK 500 2 GLN A 123 24.95 -140.35 REMARK 500 2 ARG A 157 -86.36 41.39 REMARK 500 2 ASP A 158 29.54 -140.64 REMARK 500 3 SER A 80 165.73 -42.54 REMARK 500 3 GLN A 123 26.72 -141.61 REMARK 500 3 ARG A 157 -73.08 46.80 REMARK 500 3 ASP A 158 22.98 -147.89 REMARK 500 4 ALA A 76 44.84 -146.87 REMARK 500 4 SER A 80 157.04 -43.50 REMARK 500 4 GLN A 123 28.92 -140.75 REMARK 500 4 LEU A 133 -176.52 -68.01 REMARK 500 4 ARG A 157 -101.13 39.35 REMARK 500 4 ASN A 190 70.43 -112.27 REMARK 500 5 LEU A 77 96.72 -65.42 REMARK 500 5 SER A 80 154.39 -39.44 REMARK 500 5 ARG A 157 -74.52 42.15 REMARK 500 5 ASP A 158 20.54 -141.86 REMARK 500 6 ALA A 76 39.46 -146.59 REMARK 500 6 SER A 80 161.03 -37.38 REMARK 500 6 GLN A 123 29.88 -140.87 REMARK 500 6 ARG A 157 -86.65 44.59 REMARK 500 6 ASP A 158 33.80 -144.16 REMARK 500 7 SER A 80 162.10 -35.91 REMARK 500 7 ARG A 157 -92.64 42.39 REMARK 500 7 GLN A 197 21.03 -145.50 REMARK 500 7 ALA A 198 154.48 62.58 REMARK 500 8 SER A 80 158.72 -36.92 REMARK 500 8 ARG A 157 -69.76 49.06 REMARK 500 8 ASP A 158 15.31 -149.24 REMARK 500 9 ALA A 74 166.64 58.65 REMARK 500 9 SER A 80 157.35 -44.17 REMARK 500 9 ARG A 157 -89.59 36.54 REMARK 500 9 ALA A 198 57.13 -156.88 REMARK 500 10 ALA A 74 51.75 -143.35 REMARK 500 10 ALA A 76 37.60 -155.30 REMARK 500 10 SER A 80 151.29 -44.96 REMARK 500 10 ARG A 157 -89.78 43.82 REMARK 500 10 GLN A 197 -154.54 -143.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16237 RELATED DB: BMRB REMARK 900 RELATED ID: 2KGW RELATED DB: PDB REMARK 900 THE OMPATB198-326 DBREF 2KGS A 73 204 UNP P65593 Y899_MYCTU 73 204 SEQRES 1 A 132 GLY ALA SER ALA LEU SER LEU SER LEU LEU SER ILE SER SEQRES 2 A 132 ARG SER GLY ASN THR VAL THR LEU ILE GLY ASP PHE PRO SEQRES 3 A 132 ASP GLU ALA ALA LYS ALA ALA LEU MET THR ALA LEU ASN SEQRES 4 A 132 GLY LEU LEU ALA PRO GLY VAL ASN VAL ILE ASP GLN ILE SEQRES 5 A 132 HIS VAL ASP PRO VAL VAL ARG SER LEU ASP PHE SER SER SEQRES 6 A 132 ALA GLU PRO VAL PHE THR ALA SER VAL PRO ILE PRO ASP SEQRES 7 A 132 PHE GLY LEU LYS VAL GLU ARG ASP THR VAL THR LEU THR SEQRES 8 A 132 GLY THR ALA PRO SER SER GLU HIS LYS ASP ALA VAL LYS SEQRES 9 A 132 ARG ALA ALA THR SER THR TRP PRO ASP MET LYS ILE VAL SEQRES 10 A 132 ASN ASN ILE GLU VAL THR GLY GLN ALA PRO PRO GLY PRO SEQRES 11 A 132 PRO ALA HELIX 1 1 GLY A 73 LEU A 113 0 41 HELIX 2 2 GLY A 73 SER A 145 0 73 HELIX 3 3 GLY A 73 TRP A 183 0 111 SHEET 1 A 6 LEU A 81 SER A 87 0 SHEET 2 A 6 THR A 90 ASP A 96 0 SHEET 3 A 6 ASN A 119 VAL A 126 0 SHEET 4 A 6 ASP A 150 GLU A 156 0 SHEET 5 A 6 THR A 159 ALA A 166 0 SHEET 6 A 6 LYS A 187 VAL A 194 0 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1