HEADER IMMUNE SYSTEM 23-MAR-09 2KGY TITLE SOLUTION STRUCTURE OF RV0603 PROTEIN FROM MYCOBACTERIUM TUBERCULOSIS TITLE 2 H37RV COMPND MOL_ID: 1; COMPND 2 MOLECULE: POSSIBLE EXPORTED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 28-85; COMPND 5 SYNONYM: RV0603 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV0603; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PET-NH6 KEYWDS RV0603, SECRETORY PROTEIN, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.TRIPATHI,S.V.S.R.K.PULAVARTI,P.P.PATHAK,A.K.MEHER,A.JAIN,A.ARORA REVDAT 2 16-MAR-22 2KGY 1 REMARK SEQADV REVDAT 1 31-MAR-10 2KGY 0 JRNL AUTH S.TRIPATHI,S.V.S.R.K.PULAVARTI,P.P.PATHAK,A.K.MEHER,A.JAIN, JRNL AUTH 2 A.ARORA JRNL TITL SOLUTION STRUCTURE OF RV0603 PROTEIN FROM MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS H37RV JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CYANA 2.1 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KGY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000101107. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM SODIUM PHOSPHATE-1, 50MM REMARK 210 SODIUM CHLORIDE-2, 0.1% SODIUM REMARK 210 AZIDE-3, 1MM [U-99% 15N] RV0603- REMARK 210 SSD-4, 1MM AEBSF-5, 95% H2O/5% REMARK 210 D2O; 20MM SODIUM PHOSPHATE-6, REMARK 210 50MM SODIUM CHLORIDE-7, 0.1% REMARK 210 SODIUM AZIDE-8, 1MM [U-99% 13C; REMARK 210 U-99% 15N] RV0603-SSD-9, 1MM REMARK 210 AEBSF-10, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D HNCA; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HNCO; 3D HN(CO)CA; 3D REMARK 210 HCCH-TOCSY; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D H(CCCO)NH-TOCSY; D REMARK 210 (H)CCC(O)NH-TOCSY; 2D CB(CGCD)HD; REMARK 210 2D CB(CGCE)HE REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TALOS, CARA, XEASY, CYANA 2.1, REMARK 210 MOLMOL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 TYR A 3 REMARK 465 TYR A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 49 O THR A 54 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 13 -161.63 -62.55 REMARK 500 1 PRO A 15 0.56 -69.72 REMARK 500 1 THR A 17 -168.20 -78.86 REMARK 500 1 GLU A 18 -100.16 -73.97 REMARK 500 1 ASP A 29 -77.47 -74.09 REMARK 500 1 GLU A 31 99.76 -60.02 REMARK 500 1 VAL A 34 -133.31 -84.10 REMARK 500 1 THR A 35 -58.55 -136.09 REMARK 500 1 ALA A 46 -77.69 -57.25 REMARK 500 1 GLU A 57 -168.54 -102.97 REMARK 500 1 ALA A 66 -76.04 -121.97 REMARK 500 1 THR A 74 -131.03 -168.06 REMARK 500 1 PRO A 76 16.83 -69.72 REMARK 500 1 ARG A 87 5.39 -61.21 REMARK 500 1 VAL A 91 70.87 -116.38 REMARK 500 1 PRO A 96 96.48 -69.75 REMARK 500 2 ASP A 13 -122.83 -65.98 REMARK 500 2 PRO A 15 15.86 -69.78 REMARK 500 2 THR A 16 37.86 -150.77 REMARK 500 2 THR A 17 -161.81 -71.61 REMARK 500 2 GLU A 18 -111.51 -84.13 REMARK 500 2 PHE A 22 52.93 -115.18 REMARK 500 2 GLN A 23 88.94 -58.19 REMARK 500 2 ALA A 27 61.91 -118.14 REMARK 500 2 PHE A 28 -6.15 -59.34 REMARK 500 2 GLU A 31 93.83 -62.47 REMARK 500 2 VAL A 34 -135.92 -75.03 REMARK 500 2 THR A 35 -60.43 -140.15 REMARK 500 2 ALA A 68 61.61 -155.08 REMARK 500 2 THR A 74 -135.34 -173.74 REMARK 500 2 PRO A 76 5.13 -69.72 REMARK 500 2 ASP A 88 31.02 -84.01 REMARK 500 2 PHE A 89 -27.97 98.03 REMARK 500 2 ARG A 90 38.84 -91.83 REMARK 500 2 PRO A 96 95.33 -69.73 REMARK 500 3 GLU A 18 -92.96 -129.55 REMARK 500 3 PHE A 28 46.90 -75.73 REMARK 500 3 ASP A 29 -74.62 -133.21 REMARK 500 3 ALA A 66 -82.68 -122.82 REMARK 500 3 THR A 74 -136.93 -173.43 REMARK 500 3 PRO A 76 7.88 -69.74 REMARK 500 3 ARG A 87 0.19 -68.44 REMARK 500 3 PHE A 89 -91.35 -176.71 REMARK 500 3 ARG A 90 31.44 -150.31 REMARK 500 3 PRO A 96 92.85 -69.74 REMARK 500 4 ASP A 13 -100.12 -58.44 REMARK 500 4 THR A 17 -169.17 -74.60 REMARK 500 4 GLU A 18 -97.43 -116.78 REMARK 500 4 PHE A 22 49.49 -109.60 REMARK 500 4 GLN A 23 82.63 -64.47 REMARK 500 REMARK 500 THIS ENTRY HAS 299 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16220 RELATED DB: BMRB DBREF 2KGY A 27 102 UNP O07775 O07775_MYCTU 28 103 SEQADV 2KGY MET A 1 UNP O07775 INITIATING METHIONINE SEQADV 2KGY LYS A 2 UNP O07775 EXPRESSION TAG SEQADV 2KGY TYR A 3 UNP O07775 EXPRESSION TAG SEQADV 2KGY TYR A 4 UNP O07775 EXPRESSION TAG SEQADV 2KGY HIS A 5 UNP O07775 EXPRESSION TAG SEQADV 2KGY HIS A 6 UNP O07775 EXPRESSION TAG SEQADV 2KGY HIS A 7 UNP O07775 EXPRESSION TAG SEQADV 2KGY HIS A 8 UNP O07775 EXPRESSION TAG SEQADV 2KGY HIS A 9 UNP O07775 EXPRESSION TAG SEQADV 2KGY HIS A 10 UNP O07775 EXPRESSION TAG SEQADV 2KGY ASP A 11 UNP O07775 EXPRESSION TAG SEQADV 2KGY TYR A 12 UNP O07775 EXPRESSION TAG SEQADV 2KGY ASP A 13 UNP O07775 EXPRESSION TAG SEQADV 2KGY ILE A 14 UNP O07775 EXPRESSION TAG SEQADV 2KGY PRO A 15 UNP O07775 EXPRESSION TAG SEQADV 2KGY THR A 16 UNP O07775 EXPRESSION TAG SEQADV 2KGY THR A 17 UNP O07775 EXPRESSION TAG SEQADV 2KGY GLU A 18 UNP O07775 EXPRESSION TAG SEQADV 2KGY ASN A 19 UNP O07775 EXPRESSION TAG SEQADV 2KGY LEU A 20 UNP O07775 EXPRESSION TAG SEQADV 2KGY TYR A 21 UNP O07775 EXPRESSION TAG SEQADV 2KGY PHE A 22 UNP O07775 EXPRESSION TAG SEQADV 2KGY GLN A 23 UNP O07775 EXPRESSION TAG SEQADV 2KGY GLY A 24 UNP O07775 EXPRESSION TAG SEQADV 2KGY ALA A 25 UNP O07775 EXPRESSION TAG SEQADV 2KGY MET A 26 UNP O07775 EXPRESSION TAG SEQRES 1 A 102 MET LYS TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 102 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 A 102 ALA PHE ASP GLY GLU ASP GLU VAL THR GLY PRO ASP ALA SEQRES 4 A 102 ASP ARG ALA ARG ALA ALA ALA VAL GLN ALA VAL PRO GLY SEQRES 5 A 102 GLY THR ALA GLY GLU VAL GLU THR GLU THR GLY GLU GLY SEQRES 6 A 102 ALA ALA ALA TYR GLY VAL LEU VAL THR ARG PRO ASP GLY SEQRES 7 A 102 THR ARG VAL GLU VAL HIS LEU ASP ARG ASP PHE ARG VAL SEQRES 8 A 102 LEU ASP THR GLU PRO ALA ASP GLY ASP GLY GLY HELIX 1 1 ASN A 19 PHE A 28 1 10 HELIX 2 2 PRO A 37 GLN A 48 1 12 SHEET 1 A 4 VAL A 58 GLU A 61 0 SHEET 2 A 4 ALA A 68 VAL A 71 -1 O GLY A 70 N GLU A 59 SHEET 3 A 4 ARG A 80 LEU A 85 -1 O LEU A 85 N TYR A 69 SHEET 4 A 4 THR A 94 ALA A 97 -1 O ALA A 97 N ARG A 80 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1