HEADER    SPLICING/RNA                            27-MAR-09   2KH9              
TITLE     SOLUTION STRUCTURE OF YEAST PRP24-RRM2 BOUND TO A FRAGMENT OF U6 RNA  
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: U4/U6 SNRNA-ASSOCIATED-SPLICING FACTOR PRP24;              
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: UNP RESIDUES 115-197;                                      
COMPND   5 SYNONYM: U4/U6 SNRNP PROTEIN;                                        
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MOL_ID: 2;                                                           
COMPND   8 MOLECULE: 5'-R(*AP*GP*AP*GP*AP*U)-3';                                
COMPND   9 CHAIN: B;                                                            
COMPND  10 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;                       
SOURCE   3 ORGANISM_COMMON: YEAST;                                              
SOURCE   4 ORGANISM_TAXID: 4932;                                                
SOURCE   5 GENE: PRP24, YMR268C, YM8156.10C;                                    
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21;                                      
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PET21B;                                   
SOURCE  11 MOL_ID: 2;                                                           
SOURCE  12 SYNTHETIC: YES;                                                      
SOURCE  13 OTHER_DETAILS: SYNTHETIC RNA                                         
KEYWDS    PROTEIN/RNA, RRM, SNRNP, SPLICING, MRNA PROCESSING, MRNA SPLICING,    
KEYWDS   2 NUCLEUS, PHOSPHOPROTEIN, RNA-BINDING, SPLICING-RNA COMPLEX           
EXPDTA    SOLUTION NMR                                                          
NUMMDL    10                                                                    
AUTHOR    S.A.MARTIN-TUMASZ,S.E.BUTCHER                                         
REVDAT   4   22-MAY-24 2KH9    1       REMARK                                   
REVDAT   3   16-MAR-22 2KH9    1       REMARK SEQADV                            
REVDAT   2   14-APR-10 2KH9    1       JRNL                                     
REVDAT   1   09-MAR-10 2KH9    0                                                
JRNL        AUTH   S.MARTIN-TUMASZ,N.J.REITER,D.A.BROW,S.E.BUTCHER              
JRNL        TITL   STRUCTURE AND FUNCTIONAL IMPLICATIONS OF A COMPLEX           
JRNL        TITL 2 CONTAINING A SEGMENT OF U6 RNA BOUND BY A DOMAIN OF PRP24.   
JRNL        REF    RNA                           V.  16   792 2010              
JRNL        REFN                   ISSN 1355-8382                               
JRNL        PMID   20181740                                                     
JRNL        DOI    10.1261/RNA.1913310                                          
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : AMBER, HADDOCK 2                                     
REMARK   3   AUTHORS     : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG,       
REMARK   3                 DUKE, LUO, ..., AND KOLLM (AMBER), DOMINGUEZ, C.,    
REMARK   3                 BOELENS, R., BONVIN, A.M.M.J. (HADDOCK)              
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2KH9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-09.                  
REMARK 100 THE DEPOSITION ID IS D_1000101118.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298.15                             
REMARK 210  PH                             : 7                                  
REMARK 210  IONIC STRENGTH                 : 50                                 
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 300 UM PRP24-RRM2-1, 3 MM AGAGAU   
REMARK 210                                   -2, 10 MM [U-2H] TRIS-3, 50 MM     
REMARK 210                                   POTASSIUM CHLORIDE-4, 100% D2O;    
REMARK 210                                   500 UM [U-99% 15N] PRP24-RRM2-5,   
REMARK 210                                   5 MM AGAGAU-6, 10 MM [U-2H] TRIS-  
REMARK 210                                   7, 50 MM POTASSIUM CHLORIDE-8,     
REMARK 210                                   100% D2O; 500 MM [U-99% 13C; U-    
REMARK 210                                   99% 15N] PRP24-RRM2-9, 5 MM        
REMARK 210                                   AGAGAU-10, 10 MM TRIS-11, 50 MM    
REMARK 210                                   POTASSIUM CHLORIDE-12, 1 MM DTT-   
REMARK 210                                   13, 90% H2O/10% D2O; 500 UM [U-    
REMARK 210                                   99% 13C; U-99% 15N] PRP24-RRM2-    
REMARK 210                                   14, 5 MM AGAGAU-15, 10 MM TRIS-    
REMARK 210                                   16, 50 MM POTASSIUM CHLORIDE-17,   
REMARK 210                                   1 MM DTT-18, 10 UM DSS-19, 90%     
REMARK 210                                   H2O/10% D2O; 300 UM [U-99% 13C;    
REMARK 210                                   U-99% 15N] PRP24-RRM2-20, 3 MM     
REMARK 210                                   AGAGAU-21, 10 MM TRIS-22, 50 MM    
REMARK 210                                   POTASSIUM CHLORIDE-23, 1 MM DTT-   
REMARK 210                                   24, 6.5 % DMPC/DHPC 3:1-25, 90%    
REMARK 210                                   H2O/10% D2O                        
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-13C HSQC; 2D 1H-15N HSQC;    
REMARK 210                                   3D CBCA(CO)NH; 3D C(CO)NH; 3D      
REMARK 210                                   HNCO; 3D HNCACB; 3D HBHA(CO)NH;    
REMARK 210                                   3D HCCH-TOCSY; 3D 1H-15N NOESY;    
REMARK 210                                   3D 1H-13C NOESY; 2D 1H-1H NOESY;   
REMARK 210                                   2D 1H-15N HSQC-IPAP; 3D J          
REMARK 210                                   MODULATED CHSQC                    
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ; 750 MHZ; 900 MHZ; 800     
REMARK 210                                   MHZ                                
REMARK 210  SPECTROMETER MODEL             : INOVA; DMX                         
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN; BRUKER                     
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : XWINNMR, NMRPIPE, NMRDRAW,         
REMARK 210                                   SPARKY, ATNOSCANDID, CNS, TALOS,   
REMARK 210                                   HADDOCK 2                          
REMARK 210   METHOD USED                   : SIMULATED ANNEALING, TORSION       
REMARK 210                                   ANGLE DYNAMICS                     
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 10                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                   
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                            
REMARK 465   MODELS 1-10                                                        
REMARK 465     RES C SSSEQI                                                     
REMARK 465     HIS A   200                                                      
REMARK 465     HIS A   201                                                      
REMARK 465     HIS A   202                                                      
REMARK 465     HIS A   203                                                      
REMARK 465     HIS A   204                                                      
REMARK 465     HIS A   205                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   H    ARG A   148     O    TYR A   162              1.55            
REMARK 500   O    THR A   118     HG   SER A   193              1.59            
REMARK 500   H1   MET A   114     OE1  GLU A   116              1.60            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500  2 TYR A 162   CB  -  CG  -  CD2 ANGL. DEV. =  -3.7 DEGREES          
REMARK 500  3   A B  51   C3' -  C2' -  C1' ANGL. DEV. =  -4.6 DEGREES          
REMARK 500  3   G B  52   C3' -  C2' -  C1' ANGL. DEV. =  -7.5 DEGREES          
REMARK 500  7   A B  51   C3' -  C2' -  C1' ANGL. DEV. =  -5.1 DEGREES          
REMARK 500  7   A B  51   O4' -  C1' -  N9  ANGL. DEV. =   4.7 DEGREES          
REMARK 500  8 TYR A 162   CB  -  CG  -  CD2 ANGL. DEV. =  -4.1 DEGREES          
REMARK 500  9   A B  51   C3' -  C2' -  C1' ANGL. DEV. =  -5.4 DEGREES          
REMARK 500  9   A B  51   O4' -  C1' -  N9  ANGL. DEV. =   4.5 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 THR A 115       -7.51   -140.74                                   
REMARK 500  1 GLU A 116     -155.32   -105.44                                   
REMARK 500  1 CYS A 117      -12.97    160.50                                   
REMARK 500  1 ASN A 123      110.32     43.47                                   
REMARK 500  1 PHE A 124      138.65    171.96                                   
REMARK 500  1 PRO A 126       13.11    -68.15                                   
REMARK 500  1 VAL A 142      112.46     77.95                                   
REMARK 500  1 VAL A 143      115.89     11.29                                   
REMARK 500  1 LEU A 152       -1.43    102.30                                   
REMARK 500  1 ASN A 155     -175.46   -179.60                                   
REMARK 500  1 ARG A 159        0.25    -51.07                                   
REMARK 500  1 SER A 167      -53.15   -158.77                                   
REMARK 500  1 LYS A 168      -38.89    162.86                                   
REMARK 500  1 VAL A 189       68.86   -111.79                                   
REMARK 500  2 THR A 115       23.58   -140.95                                   
REMARK 500  2 GLU A 116      -89.31   -130.12                                   
REMARK 500  2 CYS A 117      -24.17     57.84                                   
REMARK 500  2 ASN A 123      107.93     45.17                                   
REMARK 500  2 PHE A 124      130.55    171.81                                   
REMARK 500  2 VAL A 142      108.02     47.45                                   
REMARK 500  2 VAL A 143      110.31     23.58                                   
REMARK 500  2 LEU A 152      -32.37    116.91                                   
REMARK 500  2 ASN A 155      166.87    178.32                                   
REMARK 500  2 THR A 156       13.14    -65.23                                   
REMARK 500  2 SER A 157      -98.33    -49.33                                   
REMARK 500  2 ARG A 159        4.66    -48.06                                   
REMARK 500  2 PHE A 160      158.53    -44.94                                   
REMARK 500  2 SER A 167      -67.58   -170.91                                   
REMARK 500  2 LYS A 168      -40.60    178.78                                   
REMARK 500  2 GLU A 184       19.80     59.52                                   
REMARK 500  2 VAL A 189       71.96   -111.33                                   
REMARK 500  2 LEU A 196      -48.24   -131.64                                   
REMARK 500  3 THR A 115       15.40   -149.45                                   
REMARK 500  3 CYS A 117        2.38     33.83                                   
REMARK 500  3 ASN A 123      109.71     47.00                                   
REMARK 500  3 PHE A 124      134.82    173.62                                   
REMARK 500  3 VAL A 142      109.63     73.91                                   
REMARK 500  3 VAL A 143      115.22     15.81                                   
REMARK 500  3 LEU A 152       13.09     90.56                                   
REMARK 500  3 PHE A 154      -50.18   -155.87                                   
REMARK 500  3 SER A 157      -78.54   -147.96                                   
REMARK 500  3 ARG A 159       11.13    -64.80                                   
REMARK 500  3 PHE A 160      151.63    -45.93                                   
REMARK 500  3 SER A 167      -65.82   -163.34                                   
REMARK 500  3 LYS A 168      -37.43    169.35                                   
REMARK 500  3 VAL A 189       73.99   -111.21                                   
REMARK 500  4 THR A 115       -2.64   -155.37                                   
REMARK 500  4 CYS A 117      -24.67     52.91                                   
REMARK 500  4 ASN A 123      111.24     47.53                                   
REMARK 500  4 PHE A 124      139.46    176.14                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     162 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500  3   A B  53         0.09    SIDE CHAIN                              
REMARK 500  7   A B  53         0.07    SIDE CHAIN                              
REMARK 500  9   A B  53         0.06    SIDE CHAIN                              
REMARK 500  9   U B  54         0.10    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 7070   RELATED DB: BMRB                                  
DBREF  2KH9 A  115   197  UNP    P49960   PRP24_YEAST    115    197             
DBREF  2KH9 B   49    54  PDB    2KH9     2KH9            49     54             
SEQADV 2KH9 MET A  114  UNP  P49960              EXPRESSION TAG                 
SEQADV 2KH9 LEU A  198  UNP  P49960              EXPRESSION TAG                 
SEQADV 2KH9 GLU A  199  UNP  P49960              EXPRESSION TAG                 
SEQADV 2KH9 HIS A  200  UNP  P49960              EXPRESSION TAG                 
SEQADV 2KH9 HIS A  201  UNP  P49960              EXPRESSION TAG                 
SEQADV 2KH9 HIS A  202  UNP  P49960              EXPRESSION TAG                 
SEQADV 2KH9 HIS A  203  UNP  P49960              EXPRESSION TAG                 
SEQADV 2KH9 HIS A  204  UNP  P49960              EXPRESSION TAG                 
SEQADV 2KH9 HIS A  205  UNP  P49960              EXPRESSION TAG                 
SEQRES   1 A   92  MET THR GLU CYS THR LEU TRP MET THR ASN PHE PRO PRO          
SEQRES   2 A   92  SER TYR THR GLN ARG ASN ILE ARG ASP LEU LEU GLN ASP          
SEQRES   3 A   92  ILE ASN VAL VAL ALA LEU SER ILE ARG LEU PRO SER LEU          
SEQRES   4 A   92  ARG PHE ASN THR SER ARG ARG PHE ALA TYR ILE ASP VAL          
SEQRES   5 A   92  THR SER LYS GLU ASP ALA ARG TYR CYS VAL GLU LYS LEU          
SEQRES   6 A   92  ASN GLY LEU LYS ILE GLU GLY TYR THR LEU VAL THR LYS          
SEQRES   7 A   92  VAL SER ASN PRO LEU GLU LEU GLU HIS HIS HIS HIS HIS          
SEQRES   8 A   92  HIS                                                          
SEQRES   1 B    6    A   G   A   G   A   U                                      
HELIX    1   1 THR A  129  ILE A  140  1                                  12    
HELIX    2   2 LYS A  168  ASN A  179  1                                  12    
SHEET    1   A 4 ALA A 144  ARG A 148  0                                        
SHEET    2   A 4 ALA A 161  VAL A 165 -1  O  TYR A 162   N  ARG A 148           
SHEET    3   A 4 THR A 118  THR A 122 -1  N  MET A 121   O  ALA A 161           
SHEET    4   A 4 VAL A 189  VAL A 192 -1  O  LYS A 191   N  TRP A 120           
SHEET    1   B 2 LYS A 182  ILE A 183  0                                        
SHEET    2   B 2 TYR A 186  THR A 187 -1  O  TYR A 186   N  ILE A 183           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1