HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-APR-09 2KHD TITLE SOLUTION NMR STRUCTURE OF VC_A0919 FROM VIBRIO CHOLERAE. NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM TARGET VCR52 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN VC_A0919; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR STR. N16961; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: EL TOR INABA N16961 / SEROTYPE O1; SOURCE 5 ATCC: 39315; SOURCE 6 GENE: VC_A0919; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21-23C KEYWDS ALPHA BETA, STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,J.R.CORT,H.WANG,C.CICCOSANTI,M.JIANG,J.LIU,B.ROST, AUTHOR 2 G.V.T.SWAPNA,T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE, AUTHOR 3 M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 14-JUN-23 2KHD 1 REMARK REVDAT 2 26-FEB-20 2KHD 1 REMARK SEQADV REVDAT 1 16-JUN-09 2KHD 0 JRNL AUTH T.A.RAMELOT,J.R.CORT,H.WANG,C.CICCOSANTI,M.JIANG,J.LIU, JRNL AUTH 2 B.ROST,G.V.T.SWAPNA,T.B.ACTON,R.XIAO,J.K.EVERETT, JRNL AUTH 3 G.T.MONTELIONE,M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF VC_A0919 FROM VIBRIO CHOLERAE. JRNL TITL 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET VCR52. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2008, X-PLOR NIH 2.20 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NIH-XPLOR-2.20 REFINEMENT WITH HYDROGEN REMARK 3 BOND PMF, RADIUS OF GYRATION, RAMA, IVM MODULE. REMARK 4 REMARK 4 2KHD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000101122. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 273 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM MES, 100 MM SODIUM REMARK 210 CHLORIDE, 5 MM CALCIUM CHLORIDE, REMARK 210 10 MM DTT, 0.02 % SODIUM AZIDE, REMARK 210 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 95% H2O/5% D2O; 20 MM REMARK 210 MES, 100 MM SODIUM CHLORIDE, 5 REMARK 210 MM CALCIUM CHLORIDE, 10 MM DTT, REMARK 210 0.02 % SODIUM AZIDE, 0.5 MM [U-5% REMARK 210 13C; U-100% 15N] PROTEIN, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HNCO; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 C(CO)NH; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, TOPSPIN 2.1.3, REMARK 210 AUTOSTRUCTURE 2.2.1, X-PLOR NIH REMARK 210 2.20, SPARKY 3.113, PSVS 1.3, REMARK 210 AUTOASSIGN 2.3.0, PDBSTAT 5.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 125 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H2 MET A 1 H SER A 2 1.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 6 72.14 -178.75 REMARK 500 1 ASN A 9 -67.40 -96.23 REMARK 500 1 GLU A 10 -120.90 41.53 REMARK 500 1 GLU A 13 -167.89 42.35 REMARK 500 1 ALA A 14 133.26 62.24 REMARK 500 1 CYS A 15 16.64 45.32 REMARK 500 1 CYS A 17 25.92 44.45 REMARK 500 1 ALA A 18 99.95 -65.00 REMARK 500 1 GLU A 20 -34.63 -155.79 REMARK 500 1 PHE A 23 -33.36 -148.01 REMARK 500 1 ASP A 40 -168.18 -171.62 REMARK 500 1 THR A 74 -6.37 67.78 REMARK 500 1 PHE A 82 -129.42 -115.32 REMARK 500 1 GLU A 83 -33.29 -140.46 REMARK 500 1 HIS A 104 168.91 59.73 REMARK 500 1 HIS A 105 -147.86 -84.75 REMARK 500 2 CYS A 6 93.86 38.83 REMARK 500 2 GLU A 10 -157.60 -57.20 REMARK 500 2 GLU A 13 -89.01 36.44 REMARK 500 2 ALA A 18 -161.48 40.80 REMARK 500 2 GLU A 20 -122.31 44.25 REMARK 500 2 ILE A 25 69.03 33.50 REMARK 500 2 ARG A 26 179.25 -48.61 REMARK 500 2 SER A 39 -146.94 -75.78 REMARK 500 2 ASP A 40 175.98 -52.07 REMARK 500 2 THR A 74 10.59 49.69 REMARK 500 2 PHE A 82 -123.46 -133.13 REMARK 500 2 GLU A 83 -36.89 -153.65 REMARK 500 2 HIS A 105 -75.93 -151.38 REMARK 500 3 CYS A 12 32.32 -148.31 REMARK 500 3 ALA A 18 -102.02 40.97 REMARK 500 3 GLU A 20 99.46 -169.59 REMARK 500 3 ILE A 21 -88.28 48.77 REMARK 500 3 ILE A 24 -87.60 48.91 REMARK 500 3 ASP A 29 64.62 72.45 REMARK 500 3 ASP A 30 70.63 54.60 REMARK 500 3 SER A 39 -128.33 -62.65 REMARK 500 3 HIS A 105 154.97 56.59 REMARK 500 4 GLN A 4 90.74 -160.55 REMARK 500 4 VAL A 7 -28.80 -147.89 REMARK 500 4 VAL A 11 86.23 61.98 REMARK 500 4 PHE A 23 -141.16 -153.35 REMARK 500 4 ASP A 29 -172.38 45.02 REMARK 500 4 SER A 39 -81.64 -87.48 REMARK 500 4 LEU A 101 146.61 58.78 REMARK 500 4 GLU A 102 87.33 -53.08 REMARK 500 4 HIS A 105 -171.17 43.86 REMARK 500 4 HIS A 106 37.30 -155.04 REMARK 500 5 GLU A 10 177.94 47.73 REMARK 500 5 CYS A 12 100.83 50.40 REMARK 500 REMARK 500 THIS ENTRY HAS 252 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16238 RELATED DB: BMRB REMARK 900 RELATED ID: VCR52 RELATED DB: TARGETDB DBREF 2KHD A 1 100 UNP Q9KL30 Q9KL30_VIBCH 1 100 SEQADV 2KHD LEU A 101 UNP Q9KL30 EXPRESSION TAG SEQADV 2KHD GLU A 102 UNP Q9KL30 EXPRESSION TAG SEQADV 2KHD HIS A 103 UNP Q9KL30 EXPRESSION TAG SEQADV 2KHD HIS A 104 UNP Q9KL30 EXPRESSION TAG SEQADV 2KHD HIS A 105 UNP Q9KL30 EXPRESSION TAG SEQADV 2KHD HIS A 106 UNP Q9KL30 EXPRESSION TAG SEQADV 2KHD HIS A 107 UNP Q9KL30 EXPRESSION TAG SEQADV 2KHD HIS A 108 UNP Q9KL30 EXPRESSION TAG SEQRES 1 A 108 MET SER ASN GLN THR CYS VAL GLU ASN GLU VAL CYS GLU SEQRES 2 A 108 ALA CYS GLY CYS ALA GLY GLU ILE GLY PHE ILE ILE ARG SEQRES 3 A 108 GLU GLY ASP ASP VAL ALA GLU VAL SER LEU PHE GLY SER SEQRES 4 A 108 ASP LYS ALA HIS LEU GLU GLY LYS LEU ALA GLU TYR ILE SEQRES 5 A 108 SER LEU ALA LYS GLN VAL TYR ALA ASN VAL GLU TYR GLU SEQRES 6 A 108 VAL ALA PRO VAL ALA ASP ASN ALA THR GLU LEU HIS ALA SEQRES 7 A 108 ARG PHE LYS PHE GLU VAL SER ALA GLU LYS LEU ILE PHE SEQRES 8 A 108 GLU LEU LYS THR ARG ALA LEU ALA ARG LEU GLU HIS HIS SEQRES 9 A 108 HIS HIS HIS HIS HELIX 1 1 ASP A 40 TYR A 59 1 20 HELIX 2 2 VAL A 84 LEU A 101 1 18 SHEET 1 A 3 VAL A 31 PHE A 37 0 SHEET 2 A 3 GLU A 75 LYS A 81 -1 O LEU A 76 N LEU A 36 SHEET 3 A 3 GLU A 63 VAL A 66 -1 N GLU A 63 O LYS A 81 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1