HEADER HYDROLASE 03-APR-09 2KHE TITLE SOLUTION STRUCTURE OF THE BACTERIAL TOXIN RELE FROM THERMUS TITLE 2 THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOXIN-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TOXIN RELE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET11A KEYWDS RELE, TOXIN-ANTITOXIN, RNASE, PLASMID, HYDROLASE, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.SUZUKI,M.KAWAZOE,T.KAMINISHI,C.TAKEMOTO,Y.MUTO,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 10-NOV-21 2KHE 1 REMARK SEQADV REVDAT 1 31-MAR-10 2KHE 0 JRNL AUTH S.SUZUKI,M.KAWAZOE,T.KAMINISHI,C.TAKEMOTO,Y.MUTO,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE BACTERIAL TOXIN RELE FROM THERMUS JRNL TITL 2 THERMOPHILUS HB8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KHE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000101123. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN-1, 20MM [U-2H] D-TRIS- REMARK 210 HCL-2, 100MM SODIUM CHLORIDE-3, REMARK 210 5MM [U-2H] D-DTT-4, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17, REMARK 210 SPARKY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 33 -72.34 -68.81 REMARK 500 1 LEU A 47 171.43 -57.67 REMARK 500 1 ARG A 54 77.32 -61.23 REMARK 500 1 ALA A 74 53.60 34.17 REMARK 500 2 LEU A 18 170.61 -59.04 REMARK 500 2 ARG A 33 -70.91 -64.37 REMARK 500 2 ARG A 41 44.35 -100.25 REMARK 500 2 GLU A 51 -71.25 -75.81 REMARK 500 2 LEU A 52 156.25 -45.40 REMARK 500 2 ASP A 86 -74.80 -71.28 REMARK 500 3 LEU A 18 172.75 -58.48 REMARK 500 3 GLU A 32 -73.10 -115.43 REMARK 500 3 ARG A 33 -72.21 -56.54 REMARK 500 3 LEU A 47 43.57 -82.75 REMARK 500 3 ARG A 48 105.45 -52.18 REMARK 500 3 ALA A 84 -70.24 -35.90 REMARK 500 3 ASP A 86 -70.72 -50.43 REMARK 500 3 TYR A 88 155.16 -38.20 REMARK 500 4 LEU A 18 172.09 -53.98 REMARK 500 4 ARG A 33 -72.21 -61.92 REMARK 500 4 LEU A 37 106.16 -51.95 REMARK 500 4 ARG A 41 45.55 -92.56 REMARK 500 4 ASP A 86 -74.83 -93.06 REMARK 500 5 LEU A 18 174.25 -47.69 REMARK 500 5 ARG A 33 -72.22 -64.73 REMARK 500 5 GLU A 38 -39.65 -38.27 REMARK 500 5 ALA A 74 42.86 35.87 REMARK 500 5 VAL A 87 -73.84 -34.13 REMARK 500 6 ARG A 33 -71.14 -72.88 REMARK 500 6 ARG A 85 -34.41 -39.05 REMARK 500 6 ASP A 86 -71.93 -76.68 REMARK 500 6 TYR A 88 157.39 -44.40 REMARK 500 7 LEU A 18 173.90 -52.92 REMARK 500 7 ARG A 33 -71.34 -61.31 REMARK 500 7 ARG A 41 47.35 -102.94 REMARK 500 7 ALA A 74 40.45 37.29 REMARK 500 7 HIS A 83 159.70 -47.10 REMARK 500 7 ALA A 84 37.82 -82.54 REMARK 500 7 ARG A 85 -61.35 -124.76 REMARK 500 8 GLU A 12 -37.57 -35.90 REMARK 500 8 LEU A 18 171.88 -56.06 REMARK 500 8 GLU A 32 -60.97 -106.72 REMARK 500 8 ARG A 33 -72.67 -67.07 REMARK 500 8 LEU A 37 121.68 -35.76 REMARK 500 8 ARG A 41 46.24 -92.08 REMARK 500 8 LEU A 43 -71.12 -100.14 REMARK 500 8 ALA A 74 53.01 38.79 REMARK 500 9 ARG A 33 -71.16 -62.56 REMARK 500 9 LEU A 37 122.50 -36.62 REMARK 500 9 ARG A 41 46.59 -89.73 REMARK 500 REMARK 500 THIS ENTRY HAS 125 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003001365.1 RELATED DB: TARGETDB DBREF 2KHE A 1 89 UNP Q5SGM1 Q5SGM1_THET8 1 89 SEQADV 2KHE ALA A 84 UNP Q5SGM1 ARG 84 ENGINEERED MUTATION SEQRES 1 A 89 MET GLY TYR ARG ILE GLU PHE ASP PRO ARG ALA GLU LYS SEQRES 2 A 89 GLU LEU GLU LYS LEU ASP ARG GLU VAL ALA ARG ARG ILE SEQRES 3 A 89 LEU ARG PHE LEU ARG GLU ARG VAL ALA THR LEU GLU ASP SEQRES 4 A 89 PRO ARG SER LEU GLY GLU PRO LEU ARG GLY PRO GLU LEU SEQRES 5 A 89 GLY ARG PHE TRP LYS TYR ARG VAL GLY ASP TYR ARG LEU SEQRES 6 A 89 ILE CYS HIS ILE GLN ASP ARG GLU ALA THR VAL LEU VAL SEQRES 7 A 89 LEU ARG VAL GLY HIS ALA ARG ASP VAL TYR ARG HELIX 1 1 ARG A 10 LYS A 17 1 8 HELIX 2 2 ASP A 19 LEU A 37 1 19 HELIX 3 3 ASP A 71 GLU A 73 5 3 SHEET 1 A 5 ARG A 4 PHE A 7 0 SHEET 2 A 5 THR A 75 HIS A 83 1 O VAL A 76 N GLU A 6 SHEET 3 A 5 TYR A 63 GLN A 70 -1 N ILE A 66 O LEU A 79 SHEET 4 A 5 TRP A 56 VAL A 60 -1 N TYR A 58 O LEU A 65 SHEET 5 A 5 GLY A 44 PRO A 46 -1 N GLU A 45 O LYS A 57 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1