HEADER TRANSPORT PROTEIN 06-APR-09 2KHH TITLE STRUCTURAL REQUIREMENTS FOR THE UBA DOMAIN OF THE MRNA EXPORT FACTOR TITLE 2 MEX67 TO BIND ITS SPECIFIC TARGETS, THE TRANSCRIPTION ELONGATION THO TITLE 3 COMPLEX COMPONENT HPR1 AND NUCLEOPORIN FXFG REPEATS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA EXPORT FACTOR MEX67; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TAP-C DOMAIN, UNP RESIDUES 542-599; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FXFG; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: MEX67; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX4T1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS MEX67, UBA, FXFG, MRNA EXPORT, CYTOPLASM, LEUCINE-RICH REPEAT, MRNA KEYWDS 2 TRANSPORT, NUCLEUS, TRANSPORT, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.HOBEIKA,C.BROCKMANN,F.GRUESSING,D.NEUHAUS,G.DIVITA,M.STEWART, AUTHOR 2 C.DARGEMONT REVDAT 5 29-MAY-24 2KHH 1 REMARK REVDAT 4 16-MAR-22 2KHH 1 REMARK SEQADV REVDAT 3 26-JAN-10 2KHH 1 ATOM REVDAT 2 19-JAN-10 2KHH 1 ATOM JRNL REVDAT 1 12-MAY-09 2KHH 0 JRNL AUTH M.HOBEIKA,C.BROCKMANN,F.GRUESSING,D.NEUHAUS,G.DIVITA, JRNL AUTH 2 M.STEWART,C.DARGEMONT JRNL TITL STRUCTURAL REQUIREMENTS FOR THE UBIQUITIN-ASSOCIATED DOMAIN JRNL TITL 2 OF THE MRNA EXPORT FACTOR MEX67 TO BIND ITS SPECIFIC JRNL TITL 3 TARGETS, THE TRANSCRIPTION ELONGATION THO COMPLEX COMPONENT JRNL TITL 4 HPR1 AND NUCLEOPORIN FXFG REPEATS JRNL REF J.BIOL.CHEM. V. 284 17575 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19401465 JRNL DOI 10.1074/JBC.M109.004374 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.6, TALOS REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), CORNILESCU, DELAGLIO AND REMARK 3 BAX (TALOS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KHH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000101126. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 MEX67-1, 5 MM FXFG-2, 25 MM REMARK 210 SODIUM PHOSPHATE-3, 50 MM SODIUM REMARK 210 CHLORIDE-4, 90% H2O/10% D2O; 5 REMARK 210 MM FXFG-5, 25 MM SODIUM REMARK 210 PHOSPHATE-6, 50 MM SODIUM REMARK 210 CHLORIDE-7, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HCCH-COSY; 3D 1H-13C NOESY; 3D REMARK 210 1H-15N NOESY; 2D 1H-1H TOCSY; 2D REMARK 210 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.6, X-PLOR NIH, CCPNMR REMARK 210 1.0.18, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 541 REMARK 465 SER A 542 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 562 H THR A 566 1.43 REMARK 500 O LEU A 569 HG SER A 573 1.44 REMARK 500 O VAL A 579 H GLY A 583 1.47 REMARK 500 O LEU A 552 H HIS A 556 1.59 REMARK 500 OG SER B 2 H GLY B 3 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 544 156.94 64.05 REMARK 500 1 PRO A 546 -25.19 -38.74 REMARK 500 1 LYS A 560 31.03 38.93 REMARK 500 1 LEU A 561 49.71 -87.60 REMARK 500 1 ASN A 562 122.57 66.07 REMARK 500 1 ALA A 563 -79.24 -42.60 REMARK 500 1 GLU A 564 -57.01 -26.63 REMARK 500 1 TYR A 577 -83.31 132.36 REMARK 500 1 SER A 586 -89.33 -81.80 REMARK 500 1 MET A 588 64.97 20.33 REMARK 500 1 ASN A 589 -4.72 -173.55 REMARK 500 1 SER B 2 -156.54 -163.07 REMARK 500 1 PHE B 6 -111.76 -114.56 REMARK 500 1 SER B 8 95.51 -42.09 REMARK 500 2 LYS A 560 23.39 43.35 REMARK 500 2 ASN A 562 125.49 63.62 REMARK 500 2 ALA A 563 -75.51 -44.48 REMARK 500 2 GLU A 564 -57.85 -28.42 REMARK 500 2 ASN A 574 18.86 52.41 REMARK 500 2 TYR A 577 -84.18 129.06 REMARK 500 2 GLN A 585 31.87 -78.06 REMARK 500 2 SER A 586 -76.44 -108.93 REMARK 500 2 MET A 588 73.07 31.90 REMARK 500 2 ASN A 589 -1.72 -176.76 REMARK 500 2 VAL A 597 36.35 -80.68 REMARK 500 2 GLN A 598 39.69 87.31 REMARK 500 2 PHE B 6 -111.66 -113.73 REMARK 500 3 LEU A 544 156.35 62.53 REMARK 500 3 LYS A 560 27.27 38.92 REMARK 500 3 ASN A 562 124.27 65.95 REMARK 500 3 ALA A 563 -78.64 -43.81 REMARK 500 3 GLU A 564 -57.37 -26.03 REMARK 500 3 ASN A 576 -74.80 -79.78 REMARK 500 3 TYR A 577 -81.84 139.57 REMARK 500 3 GLN A 585 24.55 -75.15 REMARK 500 3 SER A 586 -78.19 -101.85 REMARK 500 3 MET A 588 68.50 22.79 REMARK 500 3 ASN A 589 0.40 -173.60 REMARK 500 3 PHE B 6 -112.95 -114.75 REMARK 500 4 LEU A 544 154.95 60.71 REMARK 500 4 PRO A 546 -25.17 -39.11 REMARK 500 4 LYS A 560 27.35 39.22 REMARK 500 4 ASN A 562 124.70 64.41 REMARK 500 4 ALA A 563 -78.53 -43.86 REMARK 500 4 GLU A 564 -56.21 -26.24 REMARK 500 4 ASN A 574 18.51 55.02 REMARK 500 4 ASN A 576 -72.09 -83.40 REMARK 500 4 TYR A 577 -83.73 135.86 REMARK 500 4 SER A 586 -82.23 -97.26 REMARK 500 4 MET A 588 67.32 29.38 REMARK 500 REMARK 500 THIS ENTRY HAS 254 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KHH A 543 599 UNP Q99257 MEX67_YEAST 543 599 DBREF 2KHH B 1 9 PDB 2KHH 2KHH 1 9 SEQADV 2KHH GLY A 541 UNP Q99257 EXPRESSION TAG SEQADV 2KHH SER A 542 UNP Q99257 EXPRESSION TAG SEQRES 1 A 59 GLY SER ARG LEU ASN PRO VAL GLN LEU GLU LEU LEU ASN SEQRES 2 A 59 LYS LEU HIS LEU GLU THR LYS LEU ASN ALA GLU TYR THR SEQRES 3 A 59 PHE MET LEU ALA GLU GLN SER ASN TRP ASN TYR GLU VAL SEQRES 4 A 59 ALA ILE LYS GLY PHE GLN SER SER MET ASN GLY ILE PRO SEQRES 5 A 59 ARG GLU ALA PHE VAL GLN PHE SEQRES 1 B 9 ASP SER GLY PHE SER PHE GLY SER LYS HELIX 1 1 ASN A 545 THR A 559 1 15 HELIX 2 2 ASN A 562 SER A 573 1 12 HELIX 3 3 TYR A 577 MET A 588 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1