HEADER DNA BINDING PROTEIN 08-APR-09 2KHL TITLE REFINED SOLUTION STRUCTURE OF METHANOSARCINA THERMOPHILA PROTEIN MC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMOSOMAL PROTEIN MC1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA THERMOPHILA; SOURCE 3 ORGANISM_TAXID: 2210; SOURCE 4 STRAIN: CHTI 55; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET24A-MC1 KEYWDS DNA-BINDING PROTEIN, ALPHA AND BETA, DNA-BINDING, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR F.PAQUET,H.MEUDAL,F.CULARD,G.LANCELOT REVDAT 3 01-MAY-24 2KHL 1 REMARK REVDAT 2 22-OCT-14 2KHL 1 JRNL VERSN REVDAT 1 12-MAY-09 2KHL 0 JRNL AUTH F.PAQUET,K.LOTH,H.MEUDAL,F.CULARD,D.GENEST,G.LANCELOT JRNL TITL REFINED SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF THE JRNL TITL 2 ARCHAEAL MC1 PROTEIN JRNL REF FEBS J. V. 277 5133 2010 JRNL REFN ISSN 1742-464X JRNL PMID 21078128 JRNL DOI 10.1111/J.1742-4658.2010.07927.X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.2, ARIA 2.2 REMARK 3 AUTHORS : RIEPING, HABECK, BARDIAUX, BERNARD, MALLIAVIN AND REMARK 3 NILGES (ARIA), RIEPING, HABECK, BARDIAUX, BERNARD, REMARK 3 MALLIAVIN AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KHL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000101130. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.1 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.6 MM [U-95% 13C; U-95% 15N] REMARK 210 MC1-1, 100 MM SODIUM ACETATE-2, REMARK 210 800 MM SODIUM CHLORIDE-3, 90% REMARK 210 H2O/10% D2O; 0.5 MM [U-95% 13C; REMARK 210 U-95% 15N] MC1-4, 100 MM SODIUM REMARK 210 ACETATE-5, 800 MM SODIUM REMARK 210 CHLORIDE-6, 7 % POLYACRYLAMIDE REMARK 210 GEL-7, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HCCH-TOCSY; 3D HN(CO)CA; 3D REMARK 210 HNCA; 3D CBCA(CO)NH; 3D HNCACB; REMARK 210 3D HNCO; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE LINUX9, NMRVIEW 5.0.16 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 600 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB2 LYS A 53 HB3 LEU A 92 1.25 REMARK 500 HD13 ILE A 79 HD3 LYS A 81 1.27 REMARK 500 HA PRO A 68 HD3 ARG A 71 1.30 REMARK 500 HD11 ILE A 44 HE3 LYS A 59 1.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 10 -151.80 -102.35 REMARK 500 1 ASN A 14 178.31 -54.63 REMARK 500 1 HIS A 16 -159.59 -142.58 REMARK 500 1 PRO A 24 -18.74 -46.96 REMARK 500 1 ALA A 27 -37.46 -34.46 REMARK 500 1 ASN A 33 8.13 -35.06 REMARK 500 1 SER A 36 36.87 -87.26 REMARK 500 1 ASN A 41 81.06 -163.90 REMARK 500 1 ASP A 43 99.29 -57.32 REMARK 500 1 ASP A 66 66.44 157.90 REMARK 500 1 LYS A 69 -63.02 -95.96 REMARK 500 1 PRO A 76 -135.98 -65.24 REMARK 500 1 ARG A 88 -173.01 174.08 REMARK 500 2 ASN A 41 67.82 -161.85 REMARK 500 2 ARG A 50 25.66 -73.05 REMARK 500 2 LYS A 53 38.21 -95.21 REMARK 500 2 PRO A 82 98.32 -68.43 REMARK 500 2 LYS A 85 98.23 -175.63 REMARK 500 2 LYS A 86 93.16 -55.96 REMARK 500 3 ASP A 10 -146.77 -59.20 REMARK 500 3 ASN A 14 -152.44 -74.01 REMARK 500 3 ARG A 25 -36.49 -39.90 REMARK 500 3 ASN A 33 7.10 -68.36 REMARK 500 3 SER A 36 -63.95 76.15 REMARK 500 3 ASN A 41 70.18 -160.29 REMARK 500 3 ARG A 50 104.46 -46.47 REMARK 500 3 PRO A 68 -173.66 -69.00 REMARK 500 3 PRO A 76 -152.52 -88.70 REMARK 500 3 PRO A 82 89.79 -65.22 REMARK 500 4 HIS A 16 -158.92 -132.18 REMARK 500 4 ASP A 66 -174.65 101.16 REMARK 500 4 PRO A 68 -175.26 -50.94 REMARK 500 4 ASN A 70 32.67 -76.01 REMARK 500 4 PRO A 82 94.58 -57.24 REMARK 500 4 LYS A 85 99.11 -176.51 REMARK 500 4 GLU A 87 23.77 -167.19 REMARK 500 5 LYS A 22 -33.03 173.36 REMARK 500 5 ALA A 67 160.07 -48.50 REMARK 500 5 PRO A 68 67.49 -67.08 REMARK 500 5 GLU A 77 -81.70 -51.81 REMARK 500 5 VAL A 84 117.24 -173.08 REMARK 500 5 ARG A 88 -174.68 173.63 REMARK 500 6 ASN A 2 91.10 62.03 REMARK 500 6 LYS A 30 -16.87 -39.62 REMARK 500 6 ASN A 33 -4.53 -48.42 REMARK 500 6 ASN A 41 82.44 -157.57 REMARK 500 6 ARG A 50 -64.46 47.21 REMARK 500 6 TRP A 61 -166.88 -162.01 REMARK 500 6 ILE A 64 74.58 -113.53 REMARK 500 6 LYS A 85 99.58 179.47 REMARK 500 REMARK 500 THIS ENTRY HAS 121 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 34 GLY A 35 5 143.18 REMARK 500 ARG A 71 PRO A 72 10 147.42 REMARK 500 LYS A 91 LEU A 92 14 -126.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 4 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T23 RELATED DB: PDB DBREF 2KHL A 1 93 UNP P12770 HMC1_METTE 1 93 SEQRES 1 A 93 SER ASN THR ARG ASN PHE VAL LEU ARG ASP GLU ASP GLY SEQRES 2 A 93 ASN GLU HIS GLY VAL PHE THR GLY LYS GLN PRO ARG GLN SEQRES 3 A 93 ALA ALA LEU LYS ALA ALA ASN ARG GLY SER GLY THR LYS SEQRES 4 A 93 ALA ASN PRO ASP ILE ILE ARG LEU ARG GLU ARG GLY THR SEQRES 5 A 93 LYS LYS VAL HIS VAL PHE LYS ALA TRP LYS GLU ILE VAL SEQRES 6 A 93 ASP ALA PRO LYS ASN ARG PRO ALA TRP MET PRO GLU LYS SEQRES 7 A 93 ILE SER LYS PRO PHE VAL LYS LYS GLU ARG ILE GLU LYS SEQRES 8 A 93 LEU GLU HELIX 1 1 GLN A 23 ASN A 33 1 11 SHEET 1 A 5 GLU A 15 GLY A 21 0 SHEET 2 A 5 ARG A 4 ARG A 9 -1 N PHE A 6 O PHE A 19 SHEET 3 A 5 ASP A 43 GLU A 49 -1 O ARG A 46 N ARG A 9 SHEET 4 A 5 LYS A 54 LYS A 62 -1 O HIS A 56 N LEU A 47 SHEET 5 A 5 PRO A 82 LYS A 91 -1 O GLU A 90 N VAL A 55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1