HEADER STRUCTURAL PROTEIN 09-APR-09 2KHM TITLE STRUCTURE OF THE C-TERMINAL NON-REPETITIVE DOMAIN OF THE SPIDER TITLE 2 DRAGLINE SILK PROTEIN ADF-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROIN-3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 513-636; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARANEUS DIADEMATUS; SOURCE 3 ORGANISM_COMMON: SPIDER; SOURCE 4 ORGANISM_TAXID: 45920; SOURCE 5 GENE: ADF-3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ALPHA HELIX, HOMODIMER, SWAPPED, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR F.X.HAGN,L.EISOLDT,J.G.HARDY,C.VENDRELY,M.COLES,T.SCHEIBEL,H.KESSLER REVDAT 4 26-FEB-20 2KHM 1 REMARK SEQADV REVDAT 3 26-MAY-10 2KHM 1 TITLE REVDAT 2 19-MAY-10 2KHM 1 JRNL REVDAT 1 14-APR-10 2KHM 0 JRNL AUTH F.HAGN,L.EISOLDT,J.G.HARDY,C.VENDRELY,M.COLES,T.SCHEIBEL, JRNL AUTH 2 H.KESSLER JRNL TITL A CONSERVED SPIDER SILK DOMAIN ACTS AS A MOLECULAR SWITCH JRNL TITL 2 THAT CONTROLS FIBRE ASSEMBLY JRNL REF NATURE V. 465 239 2010 JRNL REFN ISSN 0028-0836 JRNL PMID 20463741 JRNL DOI 10.1038/NATURE08936 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1.3, X-PLOR NIH REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA, CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KHM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000101131. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.02 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1.3MM [U-99% 13C; U-99% 15N] REMARK 210 NR3-1, 95% H2O/5% D2O; 0.6-1MM REMARK 210 NR3-2, 95% H2O/5% D2O; 1MM [U-99% REMARK 210 13C; U-99% 15N] NR3-3, 1MM NR3- REMARK 210 4, 95% H2O/5% D2O; 0.2-1MM [U-99% REMARK 210 15N] NR3-5, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HN(CO)CA; 3D REMARK 210 HN(CA)CO; 3D HCCH-TOCSY; 3D HNHA; REMARK 210 3D HNHB; 3D CCH-COSY; 3D C(CO) REMARK 210 NH; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D CNH NOESY; 3D NNH REMARK 210 NOESY; 3D CCH NOESY; 2D 1H-1H REMARK 210 NOESY; FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DMX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.11, PASTA 0.1, TALOS REMARK 210 9.4, X-PLOR NIH, PROCHECKNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 19 111.17 -160.02 REMARK 500 1 ALA A 20 88.24 57.87 REMARK 500 1 GLN A 30 84.30 61.69 REMARK 500 1 SER A 32 79.91 -154.25 REMARK 500 1 SER A 33 -60.66 -101.86 REMARK 500 1 ASN A 86 71.20 -112.99 REMARK 500 1 ALA B 2 98.53 59.62 REMARK 500 1 GLN B 9 106.75 61.26 REMARK 500 1 MET B 10 -167.97 43.06 REMARK 500 1 MET B 15 104.11 59.05 REMARK 500 1 ALA B 18 105.58 -170.79 REMARK 500 1 SER B 31 -49.53 -142.19 REMARK 500 1 ASN B 86 70.97 -113.63 REMARK 500 2 ALA A 18 35.16 -167.27 REMARK 500 2 GLN A 30 45.27 -98.46 REMARK 500 2 SER A 31 170.71 59.21 REMARK 500 2 ASN A 86 71.34 -112.47 REMARK 500 2 ALA A 139 -46.52 -161.40 REMARK 500 2 GLN B 9 -64.49 -167.72 REMARK 500 2 ALA B 21 -68.80 67.78 REMARK 500 2 ALA B 34 -60.68 -179.74 REMARK 500 2 ASN B 86 70.97 -113.05 REMARK 500 2 ALA B 139 -46.73 -161.73 REMARK 500 3 MET A 4 -66.55 -92.00 REMARK 500 3 SER A 14 128.03 63.26 REMARK 500 3 ALA A 18 35.65 -149.70 REMARK 500 3 SER A 31 171.69 58.50 REMARK 500 3 SER A 32 41.85 -101.82 REMARK 500 3 ASN A 86 70.61 -112.82 REMARK 500 3 ALA A 139 51.26 -159.50 REMARK 500 3 ALA B 2 104.62 59.86 REMARK 500 3 SER B 14 174.50 59.19 REMARK 500 3 ALA B 21 -179.00 59.78 REMARK 500 3 GLN B 30 -178.44 59.12 REMARK 500 3 ALA B 34 -60.21 -178.52 REMARK 500 3 ASN B 86 70.32 -113.42 REMARK 500 3 ALA B 139 52.03 -159.21 REMARK 500 4 ALA A 20 -54.19 -171.08 REMARK 500 4 ASN A 86 71.81 -112.36 REMARK 500 4 ALA A 139 51.78 -159.62 REMARK 500 4 SER B 33 -44.69 -168.72 REMARK 500 4 ASN B 86 71.64 -113.00 REMARK 500 4 ALA B 139 52.70 -159.21 REMARK 500 5 SER A 32 48.81 -152.25 REMARK 500 5 ASN A 86 70.08 -113.59 REMARK 500 5 THR B 5 37.61 -165.80 REMARK 500 5 ALA B 17 33.28 -164.35 REMARK 500 5 ALA B 20 -62.95 -103.36 REMARK 500 5 ALA B 21 -56.00 -163.77 REMARK 500 5 ALA B 34 -60.55 -178.84 REMARK 500 REMARK 500 THIS ENTRY HAS 193 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16249 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE ARE CONFLICTS BETWEEN SEQRES AND SEQUENCE DATABASE. REMARK 999 THE AUTHORS BELIEVE THAT THE SEQRES IS CORRECT AND IS REMARK 999 THE TRUE IDENTITY OF THESE RESIDUES AND IS NATURAL MUTANT. DBREF 2KHM A 16 139 UNP Q16987 Q16987_ARADI 513 636 DBREF 2KHM B 16 139 UNP Q16987 Q16987_ARADI 513 636 SEQADV 2KHM MET A 1 UNP Q16987 EXPRESSION TAG SEQADV 2KHM ALA A 2 UNP Q16987 EXPRESSION TAG SEQADV 2KHM SER A 3 UNP Q16987 EXPRESSION TAG SEQADV 2KHM MET A 4 UNP Q16987 EXPRESSION TAG SEQADV 2KHM THR A 5 UNP Q16987 EXPRESSION TAG SEQADV 2KHM GLY A 6 UNP Q16987 EXPRESSION TAG SEQADV 2KHM GLY A 7 UNP Q16987 EXPRESSION TAG SEQADV 2KHM GLN A 8 UNP Q16987 EXPRESSION TAG SEQADV 2KHM GLN A 9 UNP Q16987 EXPRESSION TAG SEQADV 2KHM MET A 10 UNP Q16987 EXPRESSION TAG SEQADV 2KHM GLY A 11 UNP Q16987 EXPRESSION TAG SEQADV 2KHM ARG A 12 UNP Q16987 EXPRESSION TAG SEQADV 2KHM GLY A 13 UNP Q16987 EXPRESSION TAG SEQADV 2KHM SER A 14 UNP Q16987 EXPRESSION TAG SEQADV 2KHM MET A 15 UNP Q16987 EXPRESSION TAG SEQADV 2KHM ALA A 34 UNP Q16987 VAL 531 SEE REMARK 999 SEQADV 2KHM ALA A 40 UNP Q16987 VAL 537 SEE REMARK 999 SEQADV 2KHM ASN A 67 UNP Q16987 LYS 564 SEE REMARK 999 SEQADV 2KHM GLN A 68 UNP Q16987 HIS 565 SEE REMARK 999 SEQADV 2KHM GLY A 140 UNP Q16987 SEE REMARK 999 SEQADV 2KHM MET B 1 UNP Q16987 EXPRESSION TAG SEQADV 2KHM ALA B 2 UNP Q16987 EXPRESSION TAG SEQADV 2KHM SER B 3 UNP Q16987 EXPRESSION TAG SEQADV 2KHM MET B 4 UNP Q16987 EXPRESSION TAG SEQADV 2KHM THR B 5 UNP Q16987 EXPRESSION TAG SEQADV 2KHM GLY B 6 UNP Q16987 EXPRESSION TAG SEQADV 2KHM GLY B 7 UNP Q16987 EXPRESSION TAG SEQADV 2KHM GLN B 8 UNP Q16987 EXPRESSION TAG SEQADV 2KHM GLN B 9 UNP Q16987 EXPRESSION TAG SEQADV 2KHM MET B 10 UNP Q16987 EXPRESSION TAG SEQADV 2KHM GLY B 11 UNP Q16987 EXPRESSION TAG SEQADV 2KHM ARG B 12 UNP Q16987 EXPRESSION TAG SEQADV 2KHM GLY B 13 UNP Q16987 EXPRESSION TAG SEQADV 2KHM SER B 14 UNP Q16987 EXPRESSION TAG SEQADV 2KHM MET B 15 UNP Q16987 EXPRESSION TAG SEQADV 2KHM ALA B 34 UNP Q16987 VAL 531 SEE REMARK 999 SEQADV 2KHM ALA B 40 UNP Q16987 VAL 537 SEE REMARK 999 SEQADV 2KHM ASN B 67 UNP Q16987 LYS 564 SEE REMARK 999 SEQADV 2KHM GLN B 68 UNP Q16987 HIS 565 SEE REMARK 999 SEQADV 2KHM GLY B 140 UNP Q16987 SEE REMARK 999 SEQRES 1 A 140 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 A 140 SER MET GLY ALA ALA SER ALA ALA VAL SER VAL GLY GLY SEQRES 3 A 140 TYR GLY PRO GLN SER SER SER ALA PRO VAL ALA SER ALA SEQRES 4 A 140 ALA ALA SER ARG LEU SER SER PRO ALA ALA SER SER ARG SEQRES 5 A 140 VAL SER SER ALA VAL SER SER LEU VAL SER SER GLY PRO SEQRES 6 A 140 THR ASN GLN ALA ALA LEU SER ASN THR ILE SER SER VAL SEQRES 7 A 140 VAL SER GLN VAL SER ALA SER ASN PRO GLY LEU SER GLY SEQRES 8 A 140 CYS ASP VAL LEU VAL GLN ALA LEU LEU GLU VAL VAL SER SEQRES 9 A 140 ALA LEU VAL SER ILE LEU GLY SER SER SER ILE GLY GLN SEQRES 10 A 140 ILE ASN TYR GLY ALA SER ALA GLN TYR THR GLN MET VAL SEQRES 11 A 140 GLY GLN SER VAL ALA GLN ALA LEU ALA GLY SEQRES 1 B 140 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 B 140 SER MET GLY ALA ALA SER ALA ALA VAL SER VAL GLY GLY SEQRES 3 B 140 TYR GLY PRO GLN SER SER SER ALA PRO VAL ALA SER ALA SEQRES 4 B 140 ALA ALA SER ARG LEU SER SER PRO ALA ALA SER SER ARG SEQRES 5 B 140 VAL SER SER ALA VAL SER SER LEU VAL SER SER GLY PRO SEQRES 6 B 140 THR ASN GLN ALA ALA LEU SER ASN THR ILE SER SER VAL SEQRES 7 B 140 VAL SER GLN VAL SER ALA SER ASN PRO GLY LEU SER GLY SEQRES 8 B 140 CYS ASP VAL LEU VAL GLN ALA LEU LEU GLU VAL VAL SER SEQRES 9 B 140 ALA LEU VAL SER ILE LEU GLY SER SER SER ILE GLY GLN SEQRES 10 B 140 ILE ASN TYR GLY ALA SER ALA GLN TYR THR GLN MET VAL SEQRES 11 B 140 GLY GLN SER VAL ALA GLN ALA LEU ALA GLY HELIX 1 1 SER A 33 SER A 45 1 13 HELIX 2 2 SER A 46 GLY A 64 1 19 HELIX 3 3 ASN A 67 ASN A 86 1 20 HELIX 4 4 SER A 90 SER A 113 1 24 HELIX 5 5 ALA A 122 GLY A 140 1 19 HELIX 6 6 ALA B 34 SER B 45 1 12 HELIX 7 7 SER B 46 GLY B 64 1 19 HELIX 8 8 ASN B 67 ASN B 86 1 20 HELIX 9 9 SER B 90 SER B 113 1 24 HELIX 10 10 ALA B 122 GLY B 140 1 19 SSBOND 1 CYS A 92 CYS B 92 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1