HEADER NUCLEAR PROTEIN 15-APR-09 2KHZ TITLE SOLUTION STRUCTURE OF RCL COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-MYC-RESPONSIVE PROTEIN RCL; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: RCL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET24D KEYWDS FLEXIBLE LOOP, NUCLEUS, PHOSPHOPROTEIN, NUCLEAR PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR K.DODDAPANENI,B.MAHLER,C.YUAN,Z.WU REVDAT 4 22-MAY-24 2KHZ 1 REMARK REVDAT 3 16-MAR-22 2KHZ 1 REMARK SEQADV REVDAT 2 01-DEC-09 2KHZ 1 JRNL REVDAT 1 13-OCT-09 2KHZ 0 JRNL AUTH K.DODDAPANENI,B.MAHLER,R.PAVLOVICZ,A.HAUSHALTER,C.YUAN,Z.WU JRNL TITL SOLUTION STRUCTURE OF RCL, A NOVEL 2'-DEOXYRIBONUCLEOSIDE JRNL TITL 2 5'-MONOPHOSPHATE N-GLYCOSIDASE JRNL REF J.MOL.BIOL. V. 394 423 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19720067 JRNL DOI 10.1016/J.JMB.2009.08.054 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KHZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000101144. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 25 MM SODIUM PHOSPHATE, 25 MM REMARK 210 SODIUM CHLORIDE, 2 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE-4, 12 % PF1 PHAGE- REMARK 210 5, 90% H2O/10% D2O; 25 MM SODIUM REMARK 210 PHOSPHATE, 25 MM SODIUM CHLORIDE, REMARK 210 2 MM DTT, 0.02 % SODIUM AZIDE, REMARK 210 90% H2O/10% D2O; 25 MM SODIUM REMARK 210 PHOSPHATE, 25 MM SODIUM CHLORIDE, REMARK 210 2 MM DTT-12, 0.02 % SODIUM REMARK 210 AZIDE-13, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N TROSY; 3D HNCA; 3D REMARK 210 HNCACB; 3D HN(CO)CA; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N TOCSY; 2D 1H- REMARK 210 13C CT-HSQC; 3D 1H-15N NOESY- REMARK 210 TROSY; 3D 1H-13C NOESY-HSQC; 3D REMARK 210 1H-13C-13C HMQC-NOESY-HSQC; 3D REMARK 210 13C-EDITED NOESY; 3D 15N/13C- REMARK 210 FILTERED 13C-EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, X-PLOR NIH, REMARK 210 TALOS, PROCHECKNMR, XWINNMR, REMARK 210 TOPSPIN, NMRDRAW REMARK 210 METHOD USED : SIMULATED ANNEALING, DISTANCE REMARK 210 GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 GLY B 199 REMARK 465 HIS B 200 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL B 246 H ASP B 248 1.46 REMARK 500 O VAL A 46 H ASP A 48 1.46 REMARK 500 O ALA B 335 H GLU B 338 1.49 REMARK 500 O ALA A 135 H GLU A 138 1.49 REMARK 500 OG SER B 217 H VAL B 290 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 9 -150.30 -57.62 REMARK 500 1 SER A 17 127.58 -16.20 REMARK 500 1 ILE A 18 -75.29 -94.43 REMARK 500 1 ARG A 19 72.08 48.42 REMARK 500 1 ARG A 22 -144.31 -129.09 REMARK 500 1 THR A 43 37.15 -68.27 REMARK 500 1 ALA A 47 -59.92 62.55 REMARK 500 1 ASP A 48 24.78 -65.85 REMARK 500 1 GLU A 52 158.61 55.97 REMARK 500 1 GLU A 56 -86.78 47.11 REMARK 500 1 ALA A 58 151.11 -48.66 REMARK 500 1 THR A 84 -69.00 -173.87 REMARK 500 1 PRO A 86 143.71 -37.37 REMARK 500 1 LYS A 102 -71.09 -124.55 REMARK 500 1 VAL A 115 100.54 46.99 REMARK 500 1 ALA A 124 96.42 -44.45 REMARK 500 1 ARG A 128 -31.52 98.61 REMARK 500 1 TYR A 134 -178.68 -170.19 REMARK 500 1 GLU A 138 11.32 -145.08 REMARK 500 1 TYR A 150 -105.09 -134.60 REMARK 500 1 LEU A 151 92.13 -34.40 REMARK 500 1 PRO A 152 -61.56 -94.80 REMARK 500 1 PRO B 209 -150.04 -58.09 REMARK 500 1 SER B 217 127.03 -15.94 REMARK 500 1 ILE B 218 -75.81 -93.97 REMARK 500 1 ARG B 219 71.63 49.02 REMARK 500 1 ARG B 222 -144.27 -129.21 REMARK 500 1 THR B 243 36.65 -68.34 REMARK 500 1 ALA B 247 -59.89 62.57 REMARK 500 1 ASP B 248 24.24 -65.76 REMARK 500 1 GLU B 252 158.68 56.14 REMARK 500 1 GLU B 256 -86.89 46.90 REMARK 500 1 ALA B 258 151.27 -47.92 REMARK 500 1 THR B 284 -68.64 -173.47 REMARK 500 1 PRO B 286 144.04 -37.12 REMARK 500 1 LYS B 302 -71.25 -124.54 REMARK 500 1 VAL B 315 100.26 47.67 REMARK 500 1 ALA B 324 96.20 -44.24 REMARK 500 1 ARG B 328 -31.78 98.89 REMARK 500 1 TYR B 334 -179.12 -170.28 REMARK 500 1 GLU B 338 11.33 -145.02 REMARK 500 1 TYR B 350 -105.14 -134.40 REMARK 500 1 LEU B 351 92.17 -34.22 REMARK 500 1 PRO B 352 -61.80 -94.90 REMARK 500 2 SER A 4 17.57 49.54 REMARK 500 2 PRO A 9 -154.46 -55.38 REMARK 500 2 ARG A 19 -87.99 -88.57 REMARK 500 2 ARG A 22 -164.08 -172.21 REMARK 500 2 VAL A 46 -78.75 -39.54 REMARK 500 2 GLU A 52 157.85 54.58 REMARK 500 REMARK 500 THIS ENTRY HAS 675 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KHZ A 1 163 UNP O35820 RCL_RAT 1 163 DBREF 2KHZ B 201 363 UNP O35820 RCL_RAT 1 163 SEQADV 2KHZ GLY A -1 UNP O35820 EXPRESSION TAG SEQADV 2KHZ HIS A 0 UNP O35820 EXPRESSION TAG SEQADV 2KHZ GLY B 199 UNP O35820 EXPRESSION TAG SEQADV 2KHZ HIS B 200 UNP O35820 EXPRESSION TAG SEQRES 1 A 165 GLY HIS MET ALA ALA SER GLY GLU GLN ALA PRO CYS SER SEQRES 2 A 165 VAL TYR PHE CYS GLY SER ILE ARG GLY GLY ARG GLU ASP SEQRES 3 A 165 GLN ALA LEU TYR ALA ARG ILE VAL SER ARG LEU ARG ARG SEQRES 4 A 165 TYR GLY LYS VAL LEU THR GLU HIS VAL ALA ASP ALA GLU SEQRES 5 A 165 LEU GLU PRO LEU GLY GLU GLU ALA ALA GLY GLY ASP GLN SEQRES 6 A 165 PHE ILE HIS GLU GLN ASP LEU ASN TRP LEU GLN GLN ALA SEQRES 7 A 165 ASP VAL VAL VAL ALA GLU VAL THR GLN PRO SER LEU GLY SEQRES 8 A 165 VAL GLY TYR GLU LEU GLY ARG ALA VAL ALA LEU GLY LYS SEQRES 9 A 165 PRO ILE LEU CYS LEU PHE ARG PRO GLN SER GLY ARG VAL SEQRES 10 A 165 LEU SER ALA MET ILE ARG GLY ALA ALA ASP GLY SER ARG SEQRES 11 A 165 PHE GLN VAL TRP ASP TYR ALA GLU GLY GLU VAL GLU THR SEQRES 12 A 165 MET LEU ASP ARG TYR PHE GLU ALA TYR LEU PRO GLN LYS SEQRES 13 A 165 THR ALA SER SER SER HIS PRO SER ALA SEQRES 1 B 165 GLY HIS MET ALA ALA SER GLY GLU GLN ALA PRO CYS SER SEQRES 2 B 165 VAL TYR PHE CYS GLY SER ILE ARG GLY GLY ARG GLU ASP SEQRES 3 B 165 GLN ALA LEU TYR ALA ARG ILE VAL SER ARG LEU ARG ARG SEQRES 4 B 165 TYR GLY LYS VAL LEU THR GLU HIS VAL ALA ASP ALA GLU SEQRES 5 B 165 LEU GLU PRO LEU GLY GLU GLU ALA ALA GLY GLY ASP GLN SEQRES 6 B 165 PHE ILE HIS GLU GLN ASP LEU ASN TRP LEU GLN GLN ALA SEQRES 7 B 165 ASP VAL VAL VAL ALA GLU VAL THR GLN PRO SER LEU GLY SEQRES 8 B 165 VAL GLY TYR GLU LEU GLY ARG ALA VAL ALA LEU GLY LYS SEQRES 9 B 165 PRO ILE LEU CYS LEU PHE ARG PRO GLN SER GLY ARG VAL SEQRES 10 B 165 LEU SER ALA MET ILE ARG GLY ALA ALA ASP GLY SER ARG SEQRES 11 B 165 PHE GLN VAL TRP ASP TYR ALA GLU GLY GLU VAL GLU THR SEQRES 12 B 165 MET LEU ASP ARG TYR PHE GLU ALA TYR LEU PRO GLN LYS SEQRES 13 B 165 THR ALA SER SER SER HIS PRO SER ALA HELIX 1 1 ARG A 22 GLY A 39 1 18 HELIX 2 2 THR A 43 VAL A 46 5 4 HELIX 3 3 GLY A 61 ALA A 76 1 16 HELIX 4 4 SER A 87 LEU A 100 1 14 HELIX 5 5 SER A 117 ALA A 123 1 7 HELIX 6 6 GLU A 138 ALA A 149 1 12 HELIX 7 7 ARG B 222 GLY B 239 1 18 HELIX 8 8 THR B 243 VAL B 246 5 4 HELIX 9 9 GLY B 261 ALA B 276 1 16 HELIX 10 10 SER B 287 LEU B 300 1 14 HELIX 11 11 SER B 317 ALA B 323 1 7 HELIX 12 12 GLU B 338 ALA B 349 1 12 SHEET 1 A 5 LYS A 40 VAL A 41 0 SHEET 2 A 5 SER A 11 CYS A 15 1 N VAL A 12 O LYS A 40 SHEET 3 A 5 VAL A 78 GLU A 82 1 O GLU A 82 N CYS A 15 SHEET 4 A 5 ILE A 104 PHE A 108 1 O LEU A 105 N ALA A 81 SHEET 5 A 5 PHE A 129 ASP A 133 1 O GLN A 130 N CYS A 106 SHEET 1 B 5 LYS B 240 VAL B 241 0 SHEET 2 B 5 SER B 211 CYS B 215 1 N VAL B 212 O LYS B 240 SHEET 3 B 5 VAL B 278 GLU B 282 1 O GLU B 282 N CYS B 215 SHEET 4 B 5 ILE B 304 PHE B 308 1 O LEU B 305 N ALA B 281 SHEET 5 B 5 PHE B 329 ASP B 333 1 O GLN B 330 N CYS B 306 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1