HEADER MOTOR PROTEIN 29-APR-09 2KIA TITLE SOLUTION STRUCTURE OF MYOSIN VI C-TERMINAL CARGO-BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN-VI; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CARGO-BINDING DOMAIN (CBD), UNP RESIDUES 1137-1265; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MYO6, SV; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET32A KEYWDS MYOSIN VI, CARGO-BINDING DOMAIN, MOLECULAR MOTOR, ACTIN-BINDING, ATP- KEYWDS 2 BINDING, CALMODULIN-BINDING, CELL PROJECTION, COATED PIT, COILED KEYWDS 3 COIL, CYTOPLASM, CYTOPLASMIC VESICLE, DEAFNESS, DISEASE MUTATION, KEYWDS 4 ENDOCYTOSIS, GOLGI APPARATUS, HEARING, MEMBRANE, MOTOR PROTEIN, KEYWDS 5 MYOSIN, NUCLEOTIDE-BINDING, NUCLEUS, PHOSPHOPROTEIN, PROTEIN KEYWDS 6 TRANSPORT, TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.FENG,C.YU,Z.WEI,Y.MIYANOIRI,M.ZHANG REVDAT 2 10-NOV-21 2KIA 1 REMARK SEQADV REVDAT 1 29-SEP-09 2KIA 0 JRNL AUTH C.YU,W.FENG,Z.WEI,Y.MIYANOIRI,W.WEN,Y.ZHAO,M.ZHANG JRNL TITL MYOSIN VI UNDERGOES CARGO-MEDIATED DIMERIZATION JRNL REF CELL(CAMBRIDGE,MASS.) V. 138 537 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 19665975 JRNL DOI 10.1016/J.CELL.2009.05.030 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES, REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KIA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000101154. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM MYOSIN VI CBD-1, 100% D2O; REMARK 210 1.0MM [U-100% 15N] MYOSIN VI CBD- REMARK 210 2, 90% H2O/10% D2O; 1.0MM [U-100% REMARK 210 13C; U-100% 15N] MYOSIN VI CBD- REMARK 210 3, 90% H2O/10% D2O; 1.0MM [U-100% REMARK 210 13C; U-100% 15N] MYOSIN VI CBD- REMARK 210 4, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 3D 1H-15N NOESY; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, PIPP, CNS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 7 93.53 48.15 REMARK 500 1 LYS A 9 36.88 -146.45 REMARK 500 1 LYS A 32 70.19 -119.62 REMARK 500 1 TRP A 45 -162.89 -121.93 REMARK 500 1 PRO A 57 168.21 -49.83 REMARK 500 1 PRO A 58 96.96 -60.32 REMARK 500 1 ASP A 66 39.82 -97.24 REMARK 500 1 MET A 70 174.32 -56.59 REMARK 500 1 LYS A 83 -176.41 -55.28 REMARK 500 1 CYS A 100 -77.90 -107.23 REMARK 500 1 ARG A 116 82.09 65.35 REMARK 500 1 PRO A 117 97.48 -45.36 REMARK 500 1 TYR A 119 -52.26 -160.32 REMARK 500 2 ASP A 7 91.12 46.75 REMARK 500 2 MET A 8 -80.03 -67.02 REMARK 500 2 ALA A 39 124.81 -170.34 REMARK 500 2 PRO A 57 167.55 -49.49 REMARK 500 2 PRO A 58 84.07 -60.89 REMARK 500 2 MET A 70 170.09 -48.66 REMARK 500 2 GLU A 72 -66.44 77.09 REMARK 500 2 LYS A 73 171.70 -51.43 REMARK 500 2 THR A 78 -77.04 -63.81 REMARK 500 2 LYS A 83 -168.56 -59.95 REMARK 500 2 CYS A 100 -84.66 -81.20 REMARK 500 2 ARG A 113 46.60 72.00 REMARK 500 2 ARG A 116 118.10 62.96 REMARK 500 2 PRO A 117 90.90 -49.22 REMARK 500 2 THR A 118 -165.07 -119.35 REMARK 500 3 ASP A 7 91.08 44.65 REMARK 500 3 MET A 8 -81.79 -56.23 REMARK 500 3 ALA A 39 124.49 -170.37 REMARK 500 3 TRP A 45 -160.12 -113.17 REMARK 500 3 PRO A 57 -176.57 -50.96 REMARK 500 3 PRO A 58 85.20 -59.15 REMARK 500 3 GLU A 72 -57.49 77.20 REMARK 500 3 THR A 78 -73.96 -91.51 REMARK 500 3 LYS A 83 32.05 -92.69 REMARK 500 3 CYS A 100 -82.47 -79.77 REMARK 500 3 ALA A 115 -163.92 -58.71 REMARK 500 3 PRO A 117 90.25 -50.04 REMARK 500 3 THR A 118 -50.46 -136.12 REMARK 500 3 TYR A 119 -61.60 -162.23 REMARK 500 4 ASP A 7 31.47 36.73 REMARK 500 4 MET A 8 94.53 46.62 REMARK 500 4 LYS A 9 -77.90 -86.17 REMARK 500 4 ASP A 28 138.85 -174.18 REMARK 500 4 ASN A 31 48.32 -93.73 REMARK 500 4 LYS A 32 61.88 -110.00 REMARK 500 4 LYS A 33 135.62 -39.01 REMARK 500 4 TRP A 45 -157.68 -119.83 REMARK 500 REMARK 500 THIS ENTRY HAS 313 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KIA A 1 129 UNP Q64331 MYO6_MOUSE 1137 1265 SEQADV 2KIA LYS A 73 UNP Q64331 LEU 1209 ENGINEERED MUTATION SEQRES 1 A 129 ALA ARG GLN GLN GLU ILE ASP MET LYS ARG GLN GLN ARG SEQRES 2 A 129 PHE PHE ARG ILE PRO PHE ILE ARG PRO ALA ASP GLN TYR SEQRES 3 A 129 LYS ASP PRO GLN ASN LYS LYS LYS GLY TRP TRP TYR ALA SEQRES 4 A 129 HIS PHE ASP GLY PRO TRP ILE ALA ARG GLN MET GLU LEU SEQRES 5 A 129 HIS PRO ASP LYS PRO PRO ILE LEU LEU VAL ALA GLY LYS SEQRES 6 A 129 ASP ASP MET GLU MET CYS GLU LYS ASN LEU GLU GLU THR SEQRES 7 A 129 GLY LEU THR ARG LYS ARG GLY ALA GLU ILE LEU PRO ARG SEQRES 8 A 129 GLN PHE GLU GLU ILE TRP GLU ARG CYS GLY GLY ILE GLN SEQRES 9 A 129 TYR LEU GLN SER ALA ILE GLU SER ARG GLN ALA ARG PRO SEQRES 10 A 129 THR TYR ALA THR ALA MET LEU GLN ASN LEU LEU LYS HELIX 1 1 ALA A 1 ASP A 7 1 7 HELIX 2 2 ARG A 21 ASP A 28 1 8 HELIX 3 3 ASN A 74 GLY A 79 1 6 HELIX 4 4 LEU A 89 GLY A 101 1 13 HELIX 5 5 GLY A 101 SER A 112 1 12 HELIX 6 6 TYR A 119 LEU A 128 1 10 SHEET 1 A 4 GLN A 12 ILE A 20 0 SHEET 2 A 4 LYS A 34 ASP A 42 -1 O PHE A 41 N ARG A 13 SHEET 3 A 4 TRP A 45 HIS A 53 -1 O LEU A 52 N TRP A 36 SHEET 4 A 4 LYS A 56 VAL A 62 -1 O ILE A 59 N GLU A 51 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1