HEADER HYDROLASE 03-MAY-09 2KIE TITLE A PH DOMAIN WITHIN OCRL BRIDGES CLATHRIN MEDIATED MEMBRANE TRAFFICKING TITLE 2 TO PHOSPHOINOSITIDE METABOLIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL POLYPHOSPHATE 5-PHOSPHATASE OCRL-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL RESIDUES 1-119; COMPND 5 SYNONYM: LOWE OCULOCEREBRORENAL SYNDROME PROTEIN; COMPND 6 EC: 3.1.3.36; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OCRL, INPP5F, OCRL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX6P-1 KEYWDS OCRL, INPP5B, PH, CLATHRIN, ENDOCYTOSIS, ALTERNATIVE SPLICING, KEYWDS 2 CATARACT, DISEASE MUTATION, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.MAO,D.M.BALKIN,R.ZONCU,K.ERDMANN,L.TOMASINI,F.HU,M.M.JIN, AUTHOR 2 M.E.HODSDON,P.DE CAMILLI REVDAT 2 16-MAR-22 2KIE 1 REMARK SEQADV REVDAT 1 21-JUL-09 2KIE 0 JRNL AUTH Y.MAO,D.M.BALKIN,R.ZONCU,K.S.ERDMANN,L.TOMASINI,F.HU, JRNL AUTH 2 M.M.JIN,M.E.HODSDON,P.DE CAMILLI JRNL TITL A PH DOMAIN WITHIN OCRL BRIDGES CLATHRIN-MEDIATED MEMBRANE JRNL TITL 2 TRAFFICKING TO PHOSPHOINOSITIDE METABOLISM JRNL REF EMBO J. V. 28 1831 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19536138 JRNL DOI 10.1038/EMBOJ.2009.155 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, X-PLOR NIH REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KIE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000101158. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN , 20 MM POTASSIUM REMARK 210 PHOSPHATE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D HN(CO)CA; 3D REMARK 210 CBCA(CO)NH; 3D C(CO)NH; 3D H(CCO) REMARK 210 NH; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 16 98.38 -50.96 REMARK 500 1 LEU A 29 -176.30 -174.99 REMARK 500 1 HIS A 51 40.57 -71.54 REMARK 500 1 GLU A 54 -78.98 -65.05 REMARK 500 1 ASN A 64 -160.88 -174.68 REMARK 500 1 GLU A 72 60.75 36.87 REMARK 500 1 GLU A 75 79.55 -167.42 REMARK 500 1 THR A 76 57.34 -114.63 REMARK 500 1 ASP A 80 -38.21 -144.35 REMARK 500 1 SER A 83 62.23 -103.73 REMARK 500 1 SER A 85 86.81 67.85 REMARK 500 1 GLU A 98 129.50 -174.54 REMARK 500 2 GLU A 7 105.44 -42.31 REMARK 500 2 GLN A 15 79.62 -104.78 REMARK 500 2 PRO A 16 94.74 -61.78 REMARK 500 2 LEU A 29 177.58 179.60 REMARK 500 2 GLU A 52 150.09 -45.65 REMARK 500 2 GLU A 54 -75.76 -54.55 REMARK 500 2 ASN A 64 -162.69 -175.22 REMARK 500 2 GLU A 72 58.82 37.11 REMARK 500 2 ALA A 73 -173.48 -177.99 REMARK 500 2 GLU A 75 86.76 -161.55 REMARK 500 2 THR A 76 43.67 -141.92 REMARK 500 2 ASP A 80 -36.28 -146.74 REMARK 500 2 SER A 83 66.58 -103.87 REMARK 500 2 SER A 85 98.44 65.06 REMARK 500 3 MET A 6 -136.82 45.48 REMARK 500 3 LEU A 29 -170.06 -173.94 REMARK 500 3 GLU A 54 -77.36 -64.57 REMARK 500 3 ASN A 64 -163.34 -175.66 REMARK 500 3 GLU A 72 -0.06 57.85 REMARK 500 3 GLU A 75 83.39 -161.99 REMARK 500 3 THR A 76 82.41 -154.65 REMARK 500 3 ASP A 80 -41.76 -168.45 REMARK 500 3 ALA A 82 -3.58 -56.18 REMARK 500 3 SER A 85 85.10 61.77 REMARK 500 4 PRO A 16 99.71 -59.13 REMARK 500 4 LEU A 29 -174.57 179.70 REMARK 500 4 GLU A 52 -167.72 42.39 REMARK 500 4 GLU A 54 -68.50 -138.73 REMARK 500 4 ASN A 64 -155.89 -172.94 REMARK 500 4 ALA A 73 -168.25 178.19 REMARK 500 4 GLU A 75 -105.43 -140.57 REMARK 500 4 THR A 76 35.19 36.10 REMARK 500 4 ASP A 80 -41.18 -144.25 REMARK 500 4 ALA A 82 -18.05 -45.29 REMARK 500 4 SER A 85 89.47 70.15 REMARK 500 5 LEU A 29 -179.87 -176.46 REMARK 500 5 GLU A 52 152.95 -45.49 REMARK 500 5 GLN A 55 -163.04 -173.11 REMARK 500 REMARK 500 THIS ENTRY HAS 210 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 12671 RELATED DB: BMRB DBREF 2KIE A 6 124 UNP Q01968 OCRL_HUMAN 1 119 SEQADV 2KIE GLY A 1 UNP Q01968 EXPRESSION TAG SEQADV 2KIE PRO A 2 UNP Q01968 EXPRESSION TAG SEQADV 2KIE LEU A 3 UNP Q01968 EXPRESSION TAG SEQADV 2KIE GLY A 4 UNP Q01968 EXPRESSION TAG SEQADV 2KIE SER A 5 UNP Q01968 EXPRESSION TAG SEQRES 1 A 124 GLY PRO LEU GLY SER MET GLU PRO PRO LEU PRO VAL GLY SEQRES 2 A 124 ALA GLN PRO LEU ALA THR VAL GLU GLY MET GLU MET LYS SEQRES 3 A 124 GLY PRO LEU ARG GLU PRO CYS ALA LEU THR LEU ALA GLN SEQRES 4 A 124 ARG ASN GLY GLN TYR GLU LEU ILE ILE GLN LEU HIS GLU SEQRES 5 A 124 LYS GLU GLN HIS VAL GLN ASP ILE ILE PRO ILE ASN SER SEQRES 6 A 124 HIS PHE ARG CYS VAL GLN GLU ALA GLU GLU THR LEU LEU SEQRES 7 A 124 ILE ASP ILE ALA SER ASN SER GLY CYS LYS ILE ARG VAL SEQRES 8 A 124 GLN GLY ASP TRP ILE ARG GLU ARG ARG PHE GLU ILE PRO SEQRES 9 A 124 ASP GLU GLU HIS CYS LEU LYS PHE LEU SER ALA VAL LEU SEQRES 10 A 124 ALA ALA GLN LYS ALA GLN SER HELIX 1 1 ASP A 80 ASN A 84 5 5 HELIX 2 2 ASP A 105 SER A 124 1 20 SHEET 1 A 7 VAL A 57 PRO A 62 0 SHEET 2 A 7 GLN A 43 LEU A 50 -1 N LEU A 46 O ILE A 61 SHEET 3 A 7 LEU A 29 ARG A 40 -1 N ALA A 34 O GLN A 49 SHEET 4 A 7 GLN A 15 LYS A 26 -1 N GLU A 24 O GLU A 31 SHEET 5 A 7 ARG A 99 ILE A 103 -1 O GLU A 102 N MET A 23 SHEET 6 A 7 CYS A 87 GLN A 92 -1 N ILE A 89 O PHE A 101 SHEET 7 A 7 ARG A 68 GLN A 71 -1 N VAL A 70 O ARG A 90 SSBOND 1 CYS A 87 CYS A 109 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1