HEADER TRANSFERASE 07-MAY-09 2KIO TITLE NMR STRUCTURE OF THE OXIDIZED YEAST TOR1 FATC DOMAIN BOUND TO DPC TITLE 2 MICELLES AT 318K COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE TOR1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: YEAST TOR1 FATC DOMAIN; COMPND 5 SYNONYM: PHOSPHATIDYLINOSITOL KINASE HOMOLOG TOR1, TARGET OF COMPND 6 RAPAMYCIN KINASE 1, DOMINANT RAPAMYCIN RESISTANCE PROTEIN 1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: DRR1, J1803, TOR1, YJR066W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PGEV2; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PGEV2 KEYWDS PROTEIN, DPC MICELLE, MEMBRANE-MIMETIC, ATP-BINDING, CELL CYCLE, CELL KEYWDS 2 MEMBRANE, KINASE, MEMBRANE, NUCLEOTIDE-BINDING, SERINE/THREONINE- KEYWDS 3 PROTEIN KINASE, TRANSFERASE, VACUOLE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.A.DAMES REVDAT 3 15-NOV-17 2KIO 1 REMARK REVDAT 2 16-MAR-10 2KIO 1 JRNL REVDAT 1 19-JAN-10 2KIO 0 JRNL AUTH S.A.DAMES JRNL TITL STRUCTURAL BASIS FOR THE ASSOCIATION OF THE REDOX-SENSITIVE JRNL TITL 2 TARGET OF RAPAMYCIN FATC DOMAIN WITH MEMBRANE-MIMETIC JRNL TITL 3 MICELLES. JRNL REF J.BIOL.CHEM. V. 285 7766 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20042596 JRNL DOI 10.1074/JBC.M109.058404 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.16.0, X-PLOR_NIH 2.16.0 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X REMARK 3 -PLOR_NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR_NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KIO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000101167. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.40-0.46 MM [U-13C; U-15N] REMARK 210 Y1FATC-1; 0.40 MM [U-13C; U-15N] REMARK 210 Y1FATC-2 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 3D REMARK 210 HNHB; 13C'-{13CG} SED 1H-15N REMARK 210 HSQC; 15N-{13CG} SED 1H-15N HSQC; REMARK 210 {15N} SED 1H-13C HSQC; {13C'} REMARK 210 SED 1H-13C HSQC; 15N T1; 15N T2; REMARK 210 {1H}-15N-NOE REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.2.2_01, NMRPIPE, REMARK 210 NMRDRAW, PROCHECKNMR, MOLMOL, REMARK 210 XWINNMR 3.5, TENSOR2 2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 9 H ILE A 13 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 77.36 -63.89 REMARK 500 1 GLU A 7 -70.53 -93.94 REMARK 500 1 SER A 18 -68.31 -91.47 REMARK 500 1 HIS A 25 -70.16 -95.65 REMARK 500 1 ILE A 27 -80.64 -92.26 REMARK 500 1 PHE A 32 -7.27 -53.73 REMARK 500 2 ASP A 4 40.52 -65.98 REMARK 500 2 GLN A 8 -16.64 -48.10 REMARK 500 2 THR A 17 -25.78 -37.97 REMARK 500 2 SER A 18 -70.38 -83.56 REMARK 500 2 CYS A 23 -16.40 -43.43 REMARK 500 2 HIS A 25 -70.16 -92.75 REMARK 500 2 ILE A 27 -80.13 -94.13 REMARK 500 2 PRO A 31 -84.99 -39.48 REMARK 500 2 PHE A 32 66.71 -172.65 REMARK 500 3 GLU A 2 103.91 -48.25 REMARK 500 3 PRO A 6 84.01 -52.38 REMARK 500 3 GLN A 8 -9.36 -57.85 REMARK 500 3 ALA A 16 -9.53 -48.96 REMARK 500 3 HIS A 25 -67.92 -95.48 REMARK 500 3 ILE A 27 -81.05 -98.90 REMARK 500 3 CYS A 30 101.36 -160.21 REMARK 500 3 PRO A 31 -86.12 -41.81 REMARK 500 3 PHE A 32 74.21 -178.50 REMARK 500 4 LEU A 3 12.90 -69.70 REMARK 500 4 ASP A 4 38.00 -71.53 REMARK 500 4 GLU A 7 -71.24 -93.98 REMARK 500 4 GLN A 8 -19.67 -49.30 REMARK 500 4 SER A 18 -70.05 -64.89 REMARK 500 4 HIS A 25 -70.38 -91.66 REMARK 500 4 ILE A 27 -72.00 -85.75 REMARK 500 4 TRP A 29 120.20 -170.04 REMARK 500 5 GLN A 8 -9.97 -57.35 REMARK 500 5 HIS A 25 -61.58 -95.53 REMARK 500 5 TYR A 26 -73.89 -81.66 REMARK 500 5 ILE A 27 -79.53 -76.56 REMARK 500 5 CYS A 30 73.30 -160.17 REMARK 500 5 PHE A 32 -3.20 -56.61 REMARK 500 6 LEU A 3 12.02 -66.04 REMARK 500 6 GLN A 8 -12.93 -49.77 REMARK 500 6 SER A 18 -70.10 -63.02 REMARK 500 6 HIS A 25 -65.58 -95.32 REMARK 500 6 ILE A 27 -80.93 -97.22 REMARK 500 6 CYS A 30 69.48 -155.11 REMARK 500 6 PHE A 32 1.01 -60.02 REMARK 500 7 ASP A 4 69.61 -115.50 REMARK 500 7 PRO A 6 106.39 -28.46 REMARK 500 7 GLU A 7 -70.20 -95.43 REMARK 500 7 TYR A 26 -68.52 -92.94 REMARK 500 7 ILE A 27 -80.58 -82.07 REMARK 500 REMARK 500 THIS ENTRY HAS 151 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6228 RELATED DB: BMRB REMARK 900 OXIDIZED YEAST TOR1 FATC DOMAIN IN SOLUTION AT 298K REMARK 900 RELATED ID: 1W1N RELATED DB: PDB REMARK 900 OXIDIZED YEAST TOR1 FATC DOMAIN IN SOLUTION AT 298K REMARK 900 RELATED ID: 16284 RELATED DB: BMRB REMARK 900 OXIDIZED YEAST TOR1 FATC DOMAIN BOUND TO DPC MICELLES AT 318K REMARK 900 RELATED ID: 2KIT RELATED DB: PDB REMARK 900 REDUCED YEAST TOR1 FATC DOMAIN BOUND TO DPC MICELLES AT 298K REMARK 900 RELATED ID: 16295 RELATED DB: BMRB REMARK 900 REDUCED YEAST TOR1 FATC DOMAIN BOUND TO DPC MICELLES AT 298K DBREF 2KIO A 1 33 UNP P35169 TOR1_YEAST 2438 2470 SEQRES 1 A 33 ASN GLU LEU ASP VAL PRO GLU GLN VAL ASP LYS LEU ILE SEQRES 2 A 33 GLN GLN ALA THR SER ILE GLU ARG LEU CYS GLN HIS TYR SEQRES 3 A 33 ILE GLY TRP CYS PRO PHE TRP HELIX 1 1 PRO A 6 TYR A 26 1 21 SSBOND 1 CYS A 23 CYS A 30 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1