HEADER DNA BINDING PROTEIN 11-MAY-09 2KIU TITLE SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF THE DNA-BINDING DOMAIN OF TITLE 2 FOXP1: INSIGHT INTO ITS DOMAIN SWAPPING COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORKHEAD BOX PROTEIN P1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING DOMAIN (UNP RESIDUES 462-548); COMPND 5 SYNONYM: FOXP1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: 3P14.1, FOXP1, HSPC215; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET21D(+) KEYWDS SOLUTION STRUCTURE OF THE MONOMERIC FOXP1, DNA-BINDING, METAL- KEYWDS 2 BINDING, NUCLEUS, PHOSPHOPROTEIN, REPRESSOR, TRANSCRIPTION, KEYWDS 3 TRANSCRIPTION REGULATION, ZINC-FINGER, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.CHUANG,Y.CHU REVDAT 3 10-NOV-21 2KIU 1 REMARK SEQADV REVDAT 2 27-APR-11 2KIU 1 JRNL REVDAT 1 21-APR-10 2KIU 0 JRNL AUTH Y.P.CHU,C.H.CHANG,J.H.SHIU,Y.T.CHANG,C.Y.CHEN,W.J.CHUANG JRNL TITL SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF THE DNA-BINDING JRNL TITL 2 DOMAIN OF FOXP1: INSIGHT INTO ITS DOMAIN SWAPPING AND DNA JRNL TITL 3 BINDING. JRNL REF PROTEIN SCI. V. 20 908 2011 JRNL REFN ISSN 0961-8368 JRNL PMID 21416545 JRNL DOI 10.1002/PRO.626 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.185 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES WERE CALCULATED USING A REMARK 3 TOTAL OF 1323 RESTRAINTS, INCLUDNG 1248 NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS, 75 DIHEDRAL ANGLE RESTRAINTS, 34 HYDROGEN BOND REMARK 3 DISTANCE RESTRAINTS, X-PLOR REMARK 4 REMARK 4 2KIU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000101173. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 0.245 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7-2.5 MM [U-99% 13C; U-99% REMARK 210 15N] THE DNA-BINDING DOMAIN OF REMARK 210 FOXP1-1, 20 MM PHOSPHATE BUFFER, REMARK 210 50 MM NACL, 25 MM MGCL2, 50 MM REMARK 210 ARG+GLU REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H COSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-1H TOCSY; 2D 1H-15N HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCA; 3D REMARK 210 HNCACB; 3D HCCH-TOCSY; 3D C(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU A 25 O TRP A 73 1.46 REMARK 500 O ARG A 14 H LEU A 18 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 7 -156.86 -159.28 REMARK 500 1 ARG A 43 -72.01 -144.63 REMARK 500 2 VAL A 3 64.36 -119.81 REMARK 500 2 PRO A 6 -88.64 -78.73 REMARK 500 2 ARG A 42 33.21 -93.66 REMARK 500 2 ARG A 43 -48.20 -140.42 REMARK 500 2 LEU A 58 45.04 -96.37 REMARK 500 2 ARG A 83 63.57 -112.30 REMARK 500 2 ARG A 84 -65.79 -128.50 REMARK 500 3 GLU A 2 -172.41 46.40 REMARK 500 3 PRO A 6 -166.45 -78.61 REMARK 500 3 THR A 8 49.02 -89.88 REMARK 500 3 ARG A 42 34.43 -93.50 REMARK 500 3 ARG A 43 -95.21 -120.55 REMARK 500 3 ASN A 44 91.90 -59.79 REMARK 500 3 ARG A 83 52.57 -91.87 REMARK 500 4 GLU A 2 110.31 72.34 REMARK 500 4 ASN A 44 72.26 -114.65 REMARK 500 4 ARG A 83 68.10 -110.91 REMARK 500 4 ARG A 84 -69.47 -136.35 REMARK 500 5 VAL A 3 106.64 -53.11 REMARK 500 5 PRO A 6 -159.75 -78.80 REMARK 500 5 PHE A 7 -38.10 -137.23 REMARK 500 5 ARG A 43 -66.74 -139.24 REMARK 500 6 GLU A 2 106.11 56.40 REMARK 500 6 PRO A 6 -86.36 -77.76 REMARK 500 6 PHE A 7 -92.07 -163.30 REMARK 500 6 GLU A 22 35.58 -93.97 REMARK 500 6 LYS A 23 38.37 39.76 REMARK 500 6 ARG A 43 -53.01 -124.76 REMARK 500 6 ASN A 44 59.80 -103.94 REMARK 500 6 ARG A 83 53.04 -99.95 REMARK 500 7 PRO A 6 -159.06 -78.09 REMARK 500 7 ARG A 42 47.15 -81.36 REMARK 500 7 ARG A 43 -58.82 -143.22 REMARK 500 7 ASN A 44 55.79 -112.57 REMARK 500 8 ARG A 43 -79.62 -142.63 REMARK 500 9 GLU A 2 -149.85 -65.44 REMARK 500 9 VAL A 3 -119.96 -123.60 REMARK 500 9 PRO A 6 -90.16 -78.89 REMARK 500 9 PHE A 7 38.46 -144.80 REMARK 500 9 THR A 8 43.39 -93.48 REMARK 500 9 GLU A 22 10.68 -141.44 REMARK 500 9 ARG A 43 -44.97 -136.48 REMARK 500 9 ASN A 44 57.38 -113.48 REMARK 500 9 LYS A 82 -70.31 -43.42 REMARK 500 10 VAL A 3 66.49 -115.25 REMARK 500 10 PRO A 6 -83.66 -78.07 REMARK 500 10 PHE A 7 12.52 -145.65 REMARK 500 10 ARG A 43 -81.20 -65.63 REMARK 500 REMARK 500 THIS ENTRY HAS 92 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 4 0.24 SIDE CHAIN REMARK 500 1 ARG A 14 0.20 SIDE CHAIN REMARK 500 1 ARG A 42 0.25 SIDE CHAIN REMARK 500 1 ARG A 53 0.21 SIDE CHAIN REMARK 500 1 ARG A 64 0.30 SIDE CHAIN REMARK 500 1 ARG A 83 0.29 SIDE CHAIN REMARK 500 1 ARG A 84 0.27 SIDE CHAIN REMARK 500 2 ARG A 4 0.20 SIDE CHAIN REMARK 500 2 ARG A 14 0.32 SIDE CHAIN REMARK 500 2 ARG A 36 0.24 SIDE CHAIN REMARK 500 2 ARG A 42 0.24 SIDE CHAIN REMARK 500 2 ARG A 43 0.20 SIDE CHAIN REMARK 500 2 ARG A 53 0.31 SIDE CHAIN REMARK 500 2 ARG A 64 0.31 SIDE CHAIN REMARK 500 2 ARG A 83 0.32 SIDE CHAIN REMARK 500 2 ARG A 84 0.26 SIDE CHAIN REMARK 500 3 ARG A 4 0.29 SIDE CHAIN REMARK 500 3 ARG A 14 0.31 SIDE CHAIN REMARK 500 3 ARG A 36 0.22 SIDE CHAIN REMARK 500 3 ARG A 42 0.18 SIDE CHAIN REMARK 500 3 ARG A 43 0.31 SIDE CHAIN REMARK 500 3 ARG A 53 0.32 SIDE CHAIN REMARK 500 3 ARG A 64 0.10 SIDE CHAIN REMARK 500 3 ARG A 83 0.31 SIDE CHAIN REMARK 500 3 ARG A 84 0.08 SIDE CHAIN REMARK 500 4 ARG A 4 0.29 SIDE CHAIN REMARK 500 4 ARG A 14 0.22 SIDE CHAIN REMARK 500 4 ARG A 36 0.22 SIDE CHAIN REMARK 500 4 ARG A 42 0.15 SIDE CHAIN REMARK 500 4 ARG A 43 0.32 SIDE CHAIN REMARK 500 4 ARG A 53 0.15 SIDE CHAIN REMARK 500 4 ARG A 64 0.31 SIDE CHAIN REMARK 500 4 ARG A 83 0.30 SIDE CHAIN REMARK 500 4 ARG A 84 0.28 SIDE CHAIN REMARK 500 5 ARG A 4 0.31 SIDE CHAIN REMARK 500 5 ARG A 14 0.20 SIDE CHAIN REMARK 500 5 ARG A 36 0.23 SIDE CHAIN REMARK 500 5 ARG A 42 0.31 SIDE CHAIN REMARK 500 5 ARG A 43 0.23 SIDE CHAIN REMARK 500 5 ARG A 53 0.25 SIDE CHAIN REMARK 500 5 ARG A 64 0.30 SIDE CHAIN REMARK 500 5 ARG A 83 0.32 SIDE CHAIN REMARK 500 5 ARG A 84 0.28 SIDE CHAIN REMARK 500 6 ARG A 4 0.26 SIDE CHAIN REMARK 500 6 ARG A 14 0.32 SIDE CHAIN REMARK 500 6 ARG A 36 0.27 SIDE CHAIN REMARK 500 6 ARG A 42 0.14 SIDE CHAIN REMARK 500 6 ARG A 43 0.32 SIDE CHAIN REMARK 500 6 ARG A 53 0.21 SIDE CHAIN REMARK 500 6 ARG A 64 0.27 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 174 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KIU A 1 87 UNP Q9H334 FOXP1_HUMAN 462 548 SEQADV 2KIU PRO A 39 UNP Q9H334 ALA 500 ENGINEERED MUTATION SEQADV 2KIU TYR A 61 UNP Q9H334 CYS 522 ENGINEERED MUTATION SEQRES 1 A 87 ALA GLU VAL ARG PRO PRO PHE THR TYR ALA SER LEU ILE SEQRES 2 A 87 ARG GLN ALA ILE LEU GLU SER PRO GLU LYS GLN LEU THR SEQRES 3 A 87 LEU ASN GLU ILE TYR ASN TRP PHE THR ARG MET PHE PRO SEQRES 4 A 87 TYR PHE ARG ARG ASN ALA ALA THR TRP LYS ASN ALA VAL SEQRES 5 A 87 ARG HIS ASN LEU SER LEU HIS LYS TYR PHE VAL ARG VAL SEQRES 6 A 87 GLU ASN VAL LYS GLY ALA VAL TRP THR VAL ASP GLU VAL SEQRES 7 A 87 GLU PHE GLN LYS ARG ARG PRO GLN LYS HELIX 1 1 THR A 8 GLU A 19 1 12 HELIX 2 2 THR A 26 PHE A 38 1 13 HELIX 3 3 PRO A 39 ARG A 42 5 4 HELIX 4 4 ASN A 44 HIS A 59 1 16 HELIX 5 5 ASP A 76 ARG A 83 1 8 SHEET 1 A 3 GLN A 24 LEU A 25 0 SHEET 2 A 3 VAL A 72 VAL A 75 -1 O TRP A 73 N LEU A 25 SHEET 3 A 3 PHE A 62 VAL A 65 -1 N VAL A 63 O THR A 74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1