HEADER DNA BINDING PROTEIN 12-MAY-09 2KIW TITLE SOLUTION NMR STRUCTURE OF THE DOMAIN N-TERMINAL TO THE INTEGRASE TITLE 2 DOMAIN OF SH1003 FROM STAPHYLOCOCCUS HAEMOLYTICUS. NORTHEAST TITLE 3 STRUCTURAL GENOMICS CONSORTIUM TARGET SHR105F (64-166). COMPND MOL_ID: 1; COMPND 2 MOLECULE: INT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS HAEMOLYTICUS JCSC1435; SOURCE 3 ORGANISM_TAXID: 279808; SOURCE 4 GENE: INT, SH1003; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PMGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET 21-23C KEYWDS ALPHA, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.YANG,T.A.RAMELOT,R.L.BELOTE,E.L.FOOTE,H.JANJUA,R.NAIR,B.ROST, AUTHOR 2 G.SWAPNA,T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 14-JUN-23 2KIW 1 REMARK REVDAT 2 26-FEB-20 2KIW 1 REMARK REVDAT 1 07-JUL-09 2KIW 0 JRNL AUTH Y.YANG,T.A.RAMELOT,R.L.BELOTE,E.L.FOOTE,H.JANJUA,R.NAIR, JRNL AUTH 2 B.ROST,G.SWAPNA,T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIO, JRNL AUTH 3 M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF THE DOMAIN N-TERMINAL TO THE JRNL TITL 2 INTEGRASE DOMAIN OF SH1003 FROM STAPHYLOCOCCUS HAEMOLYTICUS. JRNL TITL 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SHR105F JRNL TITL 4 (64-166). JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2008, CNS 1.2 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR-NIH-2.20 WITH HBDB REMARK 4 REMARK 4 2KIW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000101175. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.84 MM [U-100% 13C; U-100% 15N] REMARK 210 SH1003, 20 MM MES, 200 MM SODIUM REMARK 210 CHLORIDE, 5 MM CALCIUM CHLORIDE, REMARK 210 10 MM DTT, 0.02 % SODIUM AZIDE, REMARK 210 90% H2O/10% D2O; 0.79 MM SH1003, REMARK 210 20 MM MES, 200 MM SODIUM REMARK 210 CHLORIDE, 5 MM CALCIUM CHLORIDE, REMARK 210 10 MM DTT, 0.02 % SODIUM AZIDE, REMARK 210 90% H2O/10% D2O; 0.84 MM [U-100% REMARK 210 13C; U-100% 15N] SH1003, 20 MM REMARK 210 MES, 200 MM SODIUM CHLORIDE, 5 REMARK 210 MM CALCIUM CHLORIDE, 10 MM DTT, REMARK 210 0.02 % SODIUM AZIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HN(CO)CA; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH; 3D C(CO) REMARK 210 NH; 3D HCCH-TOCSY; 3D HCCH-COSY; REMARK 210 4D CC NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, TOPSPIN 2.1.3, REMARK 210 AUTOSTRUCTURE 2.2.1, X-PLOR NIH REMARK 210 2.20, SPARKY 3.113, PSVS 1.3, REMARK 210 AUTOASSIGN 2.30, PDBSTAT 5.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 77 8.60 -61.18 REMARK 500 1 VAL A 80 160.54 179.44 REMARK 500 1 LYS A 149 66.65 -117.64 REMARK 500 1 MET A 151 64.15 -150.28 REMARK 500 1 SER A 153 -39.87 171.00 REMARK 500 1 LYS A 160 -148.18 43.50 REMARK 500 1 LYS A 161 13.09 56.52 REMARK 500 1 LEU A 167 -88.57 38.00 REMARK 500 1 HIS A 171 -81.11 54.12 REMARK 500 2 ASP A 79 -75.46 55.82 REMARK 500 2 LYS A 108 -155.99 -140.24 REMARK 500 2 LYS A 157 -68.26 -163.95 REMARK 500 2 ARG A 158 53.20 -149.75 REMARK 500 2 LYS A 161 18.87 55.98 REMARK 500 2 LYS A 162 75.02 54.28 REMARK 500 2 SER A 164 -34.36 -175.26 REMARK 500 2 GLU A 166 -64.20 -138.99 REMARK 500 2 HIS A 169 -109.97 39.79 REMARK 500 2 HIS A 170 83.51 44.04 REMARK 500 3 ASN A 78 -89.18 -50.82 REMARK 500 3 PRO A 152 174.22 -43.00 REMARK 500 3 GLU A 154 -93.94 -132.50 REMARK 500 3 ILE A 156 -66.99 -126.37 REMARK 500 3 LYS A 161 78.21 43.65 REMARK 500 3 LYS A 162 -170.29 43.53 REMARK 500 3 VAL A 165 -93.00 -88.63 REMARK 500 3 GLU A 166 0.27 58.92 REMARK 500 3 HIS A 169 97.30 44.36 REMARK 500 4 ARG A 146 15.88 57.92 REMARK 500 4 MET A 151 57.77 -173.85 REMARK 500 4 ILE A 156 101.73 50.63 REMARK 500 4 LYS A 157 -107.87 -80.52 REMARK 500 4 LYS A 160 -93.07 34.98 REMARK 500 4 LYS A 161 -83.16 -160.99 REMARK 500 4 LEU A 167 -27.00 -159.69 REMARK 500 5 VAL A 80 -167.40 37.66 REMARK 500 5 SER A 153 42.20 -172.47 REMARK 500 5 ARG A 158 72.32 -118.98 REMARK 500 5 VAL A 163 -105.39 -65.13 REMARK 500 5 GLU A 166 -42.40 -154.56 REMARK 500 5 GLU A 168 48.77 -78.89 REMARK 500 5 HIS A 169 19.20 44.82 REMARK 500 5 HIS A 173 78.86 51.04 REMARK 500 6 ASN A 78 40.51 -107.29 REMARK 500 6 ASP A 79 -5.41 -159.66 REMARK 500 6 THR A 145 22.24 -75.53 REMARK 500 6 ARG A 146 22.59 38.36 REMARK 500 6 MET A 151 59.81 -164.74 REMARK 500 6 SER A 153 -5.83 -143.77 REMARK 500 6 LYS A 157 95.79 49.18 REMARK 500 REMARK 500 THIS ENTRY HAS 175 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16298 RELATED DB: BMRB REMARK 900 RELATED ID: SHR105F RELATED DB: TARGETDB DBREF 2KIW A 64 166 UNP Q4L7R3 Q4L7R3_STAHJ 64 166 SEQADV 2KIW LEU A 167 UNP Q4L7R3 EXPRESSION TAG SEQADV 2KIW GLU A 168 UNP Q4L7R3 EXPRESSION TAG SEQADV 2KIW HIS A 169 UNP Q4L7R3 EXPRESSION TAG SEQADV 2KIW HIS A 170 UNP Q4L7R3 EXPRESSION TAG SEQADV 2KIW HIS A 171 UNP Q4L7R3 EXPRESSION TAG SEQADV 2KIW HIS A 172 UNP Q4L7R3 EXPRESSION TAG SEQADV 2KIW HIS A 173 UNP Q4L7R3 EXPRESSION TAG SEQADV 2KIW HIS A 174 UNP Q4L7R3 EXPRESSION TAG SEQRES 1 A 111 THR PHE LYS GLN VAL ALA ASP ASP TRP LEU LYS GLN TYR SEQRES 2 A 111 ALA ASN ASP VAL LYS VAL SER SER VAL ARG ALA ARG GLU SEQRES 3 A 111 LYS ALA ILE GLN HIS ALA ILE GLU ARG PHE ASN THR LYS SEQRES 4 A 111 PRO ILE GLN THR ILE LYS LYS HIS ASP TYR GLN ARG PHE SEQRES 5 A 111 VAL ASP ASP ILE SER ALA GLN TYR SER LYS ASN TYR VAL SEQRES 6 A 111 ASP SER ILE VAL ALA SER THR ASN MET ILE PHE LYS TYR SEQRES 7 A 111 ALA TYR ASP THR ARG LEU ILE LYS ALA MET PRO SER GLU SEQRES 8 A 111 GLY ILE LYS ARG PRO LYS LYS LYS VAL SER VAL GLU LEU SEQRES 9 A 111 GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 64 ALA A 77 1 14 HELIX 2 2 LYS A 81 PHE A 99 1 19 HELIX 3 3 PRO A 103 ILE A 107 5 5 HELIX 4 4 LYS A 108 ALA A 121 1 14 HELIX 5 5 SER A 124 THR A 145 1 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1