HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 21-MAY-09 2KJ5 TITLE SOLUTION NMR STRUCTURE OF A DOMAIN FROM A PUTATIVE PHAGE INTEGRASE TITLE 2 PROTEIN NMUL_A0064 FROM NITROSOSPIRA MULTIFORMIS, NORTHEAST TITLE 3 STRUCTURAL GENOMICS CONSORTIUM TARGET NMR46C COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHAGE INTEGRASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 101-207; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOSPIRA MULTIFORMIS ATCC 25196; SOURCE 3 ORGANISM_TAXID: 323848; SOURCE 4 ATCC: 25196; SOURCE 5 GENE: NMUL_A0064; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET 21-23C KEYWDS PHAGE INTEGRASE, GFT NMR, PSI-2, NESG, STRUCTURAL GENOMICS, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.L.MILLS,A.ELETSKY,A.GHOSH,D.WANG,H.LEE,C.CICCOSANTI,M.JIANG,R.NAIR, AUTHOR 2 B.ROST,G.V.T.SWAPNA,T.B.ACTON,R.XIAO,J.K.EVERETT,J.H.PRESTEGARD, AUTHOR 3 G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (NESG) REVDAT 4 26-FEB-20 2KJ5 1 REMARK SEQADV REVDAT 3 14-MAR-12 2KJ5 1 JRNL REVDAT 2 07-MAR-12 2KJ5 1 AUTHOR JRNL VERSN REVDAT 1 02-JUN-09 2KJ5 0 JRNL AUTH J.L.MILLS,A.ELETSKY,A.GHOSH,D.WANG,H.LEE,C.CICCOSANTI, JRNL AUTH 2 M.JIANG,R.NAIR,B.ROST,G.V.T.SWAPNA,T.B.ACTON,R.XIAO, JRNL AUTH 3 J.K.EVERETT,J.H.PRESTEGARD,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF A DOMAIN FROM A PUTATIVE PHAGE JRNL TITL 2 INTEGRASE PROTEIN NMUL_A0064 FROM NITROSOSPIRA MULTIFORMIS, JRNL TITL 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET NMR46C. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ, CYANA, CNS, MOLMOL, AUTOSTRUCTURE, PSVS REMARK 3 AUTHORS : VARIAN (VNMRJ), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS), KORADI, BILLETER AND WUTHRICH (MOLMOL), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE), BHATTACHARYA AND MONTELIONE (PSVS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KJ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000101184. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 430 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-98% 13C; U-98% 15N] REMARK 210 NMR46C, 10 % D2O, 90 % H2O, 20 REMARK 210 MM MES, 200 MM SODIUM CHLORIDE, REMARK 210 5 MM CALCIUM CHLORIDE, 10 MM DTT, REMARK 210 50 UM DSS, 1X V/V PROTEASE REMARK 210 INHIBITORS, 0.02 % SODIUM AZIDE, REMARK 210 90% H2O/10% D2O; 1.2 MM [U-5% REMARK 210 13C; U-98% 15N] NMR46C, 10 % D2O, REMARK 210 90 % H2O, 20 MM MES, 200 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 50 UM DSS, REMARK 210 1X V/V PROTEASE INHIBITORS, 0.02 REMARK 210 % SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 1.2 MM [U-5% 13C; U-98% 15N] REMARK 210 NMR46C, 10 % D2O, 90 % H2O, 20 REMARK 210 MM MES, 200 MM SODIUM CHLORIDE, REMARK 210 5 MM CALCIUM CHLORIDE, 10 MM DTT, REMARK 210 50 UM DSS, 1X V/V PROTEASE REMARK 210 INHIBITORS, 0.02 % SODIUM AZIDE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D SIM 15N,13C NOESY; 3D HNCO; REMARK 210 (4,3)D HNCABCA; GFT (4,3)D REMARK 210 CABCA(CO)NH; GFT (4,3)D REMARK 210 HABCAB(CO)NH; GFT (4,3)D AROM. REMARK 210 HCCH; GFT (4,3)D ALIPH. HCCH; 2D REMARK 210 1H-15N TROSY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPSCAN, XEASY, REMARK 210 AUTOASSIGN, TALOS, CYANA, CNS, REMARK 210 MOLMOL, AUTOSTRUCTURE REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 38 HH21 ARG A 66 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 170.88 67.01 REMARK 500 1 LYS A 4 -46.26 -153.37 REMARK 500 1 ASN A 5 15.98 -150.15 REMARK 500 1 ALA A 6 39.81 -97.41 REMARK 500 1 LYS A 26 -18.84 60.81 REMARK 500 1 ALA A 42 -32.74 -166.57 REMARK 500 1 ASP A 104 -115.63 -144.72 REMARK 500 1 ALA A 105 84.03 56.22 REMARK 500 1 LYS A 108 -175.02 72.34 REMARK 500 1 HIS A 112 -56.12 -176.74 REMARK 500 1 HIS A 113 114.16 -178.85 REMARK 500 2 LYS A 4 -42.17 -174.47 REMARK 500 2 ASN A 5 146.45 -173.41 REMARK 500 2 LYS A 26 147.03 62.84 REMARK 500 2 ALA A 42 13.29 -141.66 REMARK 500 2 ILE A 92 -39.93 -131.35 REMARK 500 3 LYS A 4 -32.57 -151.54 REMARK 500 3 TRP A 25 -47.42 -140.08 REMARK 500 3 LYS A 26 -37.40 67.31 REMARK 500 3 LYS A 40 76.52 -119.21 REMARK 500 3 ALA A 42 34.19 -165.51 REMARK 500 3 LEU A 46 41.21 -102.53 REMARK 500 3 LYS A 47 169.00 58.04 REMARK 500 3 LYS A 65 -75.77 -92.42 REMARK 500 3 HIS A 111 86.08 60.51 REMARK 500 3 HIS A 114 91.23 -66.19 REMARK 500 4 GLU A 3 26.83 -76.13 REMARK 500 4 ASN A 5 -67.36 -169.28 REMARK 500 4 ALA A 22 69.72 -104.15 REMARK 500 4 ARG A 24 76.20 62.41 REMARK 500 4 LYS A 26 -14.42 66.87 REMARK 500 4 LYS A 47 167.14 54.10 REMARK 500 4 HIS A 90 75.73 64.13 REMARK 500 4 ILE A 91 -62.23 -126.82 REMARK 500 4 ALA A 105 28.28 -150.54 REMARK 500 4 LEU A 109 27.52 -160.51 REMARK 500 5 ASN A 5 -67.25 -169.81 REMARK 500 5 TRP A 25 -45.31 -137.96 REMARK 500 5 LYS A 26 120.71 62.83 REMARK 500 5 HIS A 27 82.32 68.89 REMARK 500 5 LYS A 40 77.46 -115.72 REMARK 500 5 ALA A 42 -41.34 -155.50 REMARK 500 5 ILE A 43 81.97 -63.96 REMARK 500 5 LYS A 47 177.52 50.32 REMARK 500 5 LYS A 65 -77.56 -69.18 REMARK 500 5 ALA A 68 145.21 -173.39 REMARK 500 5 ASN A 95 76.70 57.75 REMARK 500 5 HIS A 112 154.94 74.48 REMARK 500 5 HIS A 113 -71.60 -155.75 REMARK 500 5 HIS A 114 168.37 64.50 REMARK 500 REMARK 500 THIS ENTRY HAS 207 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NMR46C RELATED DB: TARGETDB REMARK 900 RELATED ID: 16312 RELATED DB: BMRB DBREF 2KJ5 A 2 108 UNP Q2YCZ8 Q2YCZ8_NITMU 101 207 SEQADV 2KJ5 MET A 1 UNP Q2YCZ8 INITIATING METHIONINE SEQADV 2KJ5 LEU A 109 UNP Q2YCZ8 EXPRESSION TAG SEQADV 2KJ5 GLU A 110 UNP Q2YCZ8 EXPRESSION TAG SEQADV 2KJ5 HIS A 111 UNP Q2YCZ8 EXPRESSION TAG SEQADV 2KJ5 HIS A 112 UNP Q2YCZ8 EXPRESSION TAG SEQADV 2KJ5 HIS A 113 UNP Q2YCZ8 EXPRESSION TAG SEQADV 2KJ5 HIS A 114 UNP Q2YCZ8 EXPRESSION TAG SEQADV 2KJ5 HIS A 115 UNP Q2YCZ8 EXPRESSION TAG SEQADV 2KJ5 HIS A 116 UNP Q2YCZ8 EXPRESSION TAG SEQRES 1 A 116 MET ALA GLU LYS ASN ALA TYR THR VAL ALA GLN LEU ALA SEQRES 2 A 116 ASP GLU TYR PHE GLU ARG MET ILE ALA GLY ARG TRP LYS SEQRES 3 A 116 HIS PRO ASN ILE VAL ARG SER ARG ILE GLU LYS ASP ILE SEQRES 4 A 116 LYS PRO ALA ILE GLY SER LEU LYS VAL GLU ASP VAL LYS SEQRES 5 A 116 PRO ARG HIS ILE ASP ASP VAL LEU LYS ALA VAL MET LYS SEQRES 6 A 116 ARG GLY ALA PRO SER ILE ALA ASN ASP THR LEU ARG TRP SEQRES 7 A 116 LEU LYS ARG MET PHE ASN TYR ALA ILE LYS ARG HIS ILE SEQRES 8 A 116 ILE GLU TYR ASN PRO ALA ALA ALA PHE ASP PRO GLY ASP SEQRES 9 A 116 ALA GLY GLY LYS LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 8 ILE A 21 1 14 HELIX 2 2 HIS A 27 ASP A 38 1 12 HELIX 3 3 ALA A 42 LEU A 46 5 5 HELIX 4 4 LYS A 52 GLY A 67 1 16 HELIX 5 5 ALA A 68 ARG A 89 1 22 HELIX 6 6 ASN A 95 PHE A 100 5 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1